Gene Details:
- Gene ID: AT2G32840
- Gene Symbol: LIN37B
- Gene Name: LIN37 homolog B
- Description: proline-rich family protein;(source:Araport11)
- TAIR Accession: locus:2046382
- Genome: Araport11_genome_release
- Species: Arabidopsis thaliana
Transcripts:
Gene Ontology:
- GO:0070176 — located in — DRM complex
- GO:0006996 — acts upstream of or within — organelle organization
- GO:0016070 — acts upstream of or within — RNA metabolic process
- GO:0048193 — acts upstream of or within — Golgi vesicle transport
- GO:0005515 — enables — protein binding
- GO:0005634 — located in — nucleus
- GO:0010605 — acts upstream of or within — negative regulation of macromolecule metabolic process
Germplasm Phenotype:
- SALK_103139 — Increased root growth in DNA damaging media.
Literature:
- Inactivation of the chloroplast ATP synthase gamma subunit results in high non-photochemical fluorescence quenching and altered nuclear gene expression in Arabidopsis thaliana. DOI: 10.1074/jbc.M308435200 ; PMID: 14576160
- DREAM complex suppresses DNA methylation maintenance genes and precludes DNA hypermethylation. DOI: 10.1038/s41477-020-0710-7 ; PMID: 32661276
- The DREAM complex represses growth in response to DNA damage in Arabidopsis. DOI: 10.26508/lsa.202101141 ; PMID: 34583930
Sequence:
cDNA Sequence
- >AT2G32840.2 AACTTAAAAAGAGTTCGTGTCCTGAAAATCAAAGAAAAAGCTACCAAATTTTGAATCGTTGTCTTTAACTTGATTTTCCCCAAATTTCTCAGAAATCAAAATCCGCCGGAACAATGTCTACTCCCGATCCCAATCCCAATCCAAATCCAAATCCTTCCGTCTCTGTAGCAGTATCGACTCCAATCGTCACCGCATCTGAATCTCCGGTGACACAACCTAACACAGTCATAACGCCGTCGTCTCAACCTCAACCTCAAACACCAGCTTCGTCGTACAGAGCCATAGCTCCGCTTCATCGTCATCATCCTCATCAAAATATCTACACTAACCCTTTACCGATTAGGCGTTCGAATTCCGTTACTAATTCGCCTCATCAGCCTCCTCACCCAGACCCGTCTAGTCTGATATACCCGTTTGGTTCTTCGGGTCGAGGGTTTCCGACCCGACCCGTTAGACAGAATTCCAATTCCGTCGCTGATCCAGTTGGTAGTCCTAGTCCAGGTGGGTATACTCCTCGAGGGCCAGTTTACGGATACCACCATGGCCAATTCGTGTCGAATTTGGATCCAATGAATCAGTTCATGAGAGCTGCACATCCTCAGAATCAACAATCTCCTCAACTTGGTTCCGGTCATATGAAAGGAGTTCCTCATTTTTTGCAACCTCGGGCTACTCCTTCTCCAACTTCAATTCTAGACAACAGTGGGCATAAGAAGGCCAGGAGCCGGGATGATGCTCTGGTCCTCGTTAGAAAAAGAAAGGTTAGAATAACCGAGGGAGCTTCTTTATACTCGCTGTGTCGATCTTGGTTGAGAAATGGTGCTCATGAGGGAATTAAGCCGCAGCGAATTGATATGATGACATGTTTGCCAAAGCCTTTACCTGTGGACAAGACGGAGACAAGTTTGCCAAAAGATTTAGTTGAAGAAGCAATTTGCGAAGAAGACAAAGAGGTTTCGTGTTTCTCTGATTTCTTTCTAAAATGGTAATTGTGAAGGGTAAAGCTAAGTTTGATTATTTACTTCAACTCTCTTGATGAGCTTCAGGACGAGGAATCTGTGAAACATTTGTCAGAATCTGATCTTTTGAAAAGACATATAGACCGAGCTAAGAAGGTCCGCGCTCGATTGAGAGAAGAACGGTTAAAGAGAATCGCGAGGTACAAGGCAAGATTGGCTCTTCTTCTGCCACCCTTTGGAGAGCAATGCAGGAACGAGTAATGATTTTAAAGTTAGGGACTTCGGTGTGAATATACTTGCAGTTGATTTAGAAATGACATAAATTATCTTAGAGCCAGAGTTATGTCTTATGTCTGTGTGTAATATAAGAAAGATTTTCTCTGAATTTTCGTCATACACTCGTATTAGATGATTCTAAACTAATCAA
- >AT2G32840.1 AACTTAAAAAGAGTTCGTGTCCTGAAAATCAAAGAAAAAGCTACCAAATTTTGAATCGTTGTCTTTAACTTGATTTTCCCCAAATTTCTCAGAAATCAAAATCCGCCGGAACAATGTCTACTCCCGATCCCAATCCCAATCCAAATCCAAATCCTTCCGTCTCTGTAGCAGTATCGACTCCAATCGTCACCGCATCTGAATCTCCGGTGACACAACCTAACACAGTCATAACGCCGTCGTCTCAACCTCAACCTCAAACACCAGCTTCGTCGTACAGAGCCATAGCTCCGCTTCATCGTCATCATCCTCATCAAAATATCTACACTAACCCTTTACCGATTAGGCGTTCGAATTCCGTTACTAATTCGCCTCATCAGCCTCCTCACCCAGACCCGTCTAGTCTGATATACCCGTTTGGTTCTTCGGGTCGAGGGTTTCCGACCCGACCCGTTAGACAGAATTCCAATTCCGTCGCTGATCCAGTTGGTAGTCCTAGTCCAGGTGGGTATACTCCTCGAGGGCCAGTTTACGGATACCACCATGGCCAATTCGTGTCGAATTTGGATCCAATGAATCAGTTCATGAGAGCTGCACATCCTCAGAATCAACAATCTCCTCAACTTGGTTCCGGTCATATGAAAGGAGTTCCTCATTTTTTGCAACCTCGGGCTACTCCTTCTCCAACTTCAATTCTAGACAACAGTGGGCATAAGAAGGCCAGGAGCCGGGATGATGCTCTGGTCCTCGTTAGAAAAAGAAAGGTTAGAATAACCGAGGGAGCTTCTTTATACTCGCTGTGTCGATCTTGGTTGAGAAATGGTGCTCATGAGGGAATTAAGCCGCAGCGAATTGATATGATGACATGTTTGCCAAAGCCTTTACCTGTGGACAAGACGGAGACAAGTTTGCCAAAAGATTTAGTTGAAGAAGCAATTTGCGAAGAAGACAAAGAGGTTTCGTGTTTCTCTGATTTCTTTCTAAAATGGTAATTGTGAAGGGTAAAGCTAAGTTTGATTATTTACTTCAACTCTCTTGATGAGCTTCAGGACGAGGAATCTGTGAAACATTTGTCAGAATCTGATCTTTTGAAAAGACATATAGACCGAGCTAAGAAGGTCCGCGCTCGATTGAGAGAAGAACGGTTAAAGAGAATCGCGAGGTACAAGGCAAGATTGGCTCTTCTTCTGCCACCCTTTGGAGAGCAATGCAGGAACGAGTAATGATTTTAAAGTTAGGGACTTCGGTGTGAATATACTTGCAGTTGATTTAGAAATGACATAAATTATCTTAGAGCCAGAGTTATGTCTTATGTCTGTGTGTAATATAAGAAAGATTTTCTCTGAATTTTCGTCATACACTCGTATTAGATGATTCTAAACTAATCAA
CDS Sequence
- >AT2G32840.2 ATGTCTACTCCCGATCCCAATCCCAATCCAAATCCAAATCCTTCCGTCTCTGTAGCAGTATCGACTCCAATCGTCACCGCATCTGAATCTCCGGTGACACAACCTAACACAGTCATAACGCCGTCGTCTCAACCTCAACCTCAAACACCAGCTTCGTCGTACAGAGCCATAGCTCCGCTTCATCGTCATCATCCTCATCAAAATATCTACACTAACCCTTTACCGATTAGGCGTTCGAATTCCGTTACTAATTCGCCTCATCAGCCTCCTCACCCAGACCCGTCTAGTCTGATATACCCGTTTGGTTCTTCGGGTCGAGGGTTTCCGACCCGACCCGTTAGACAGAATTCCAATTCCGTCGCTGATCCAGTTGGTAGTCCTAGTCCAGGTGGGTATACTCCTCGAGGGCCAGTTTACGGATACCACCATGGCCAATTCGTGTCGAATTTGGATCCAATGAATCAGTTCATGAGAGCTGCACATCCTCAGAATCAACAATCTCCTCAACTTGGTTCCGGTCATATGAAAGGAGTTCCTCATTTTTTGCAACCTCGGGCTACTCCTTCTCCAACTTCAATTCTAGACAACAGTGGGCATAAGAAGGCCAGGAGCCGGGATGATGCTCTGGTCCTCGTTAGAAAAAGAAAGGTTAGAATAACCGAGGGAGCTTCTTTATACTCGCTGTGTCGATCTTGGTTGAGAAATGGTGCTCATGAGGGAATTAAGCCGCAGCGAATTGATATGATGACATGTTTGCCAAAGCCTTTACCTGTGGACAAGACGGAGACAAGTTTGCCAAAAGATTTAGTTGAAGAAGCAATTTGCGAAGAAGACAAAGAGGTTTCGTGTTTCTCTGATTTCTTTCTAAAATGGTAA
- >AT2G32840.1 ATGTCTACTCCCGATCCCAATCCCAATCCAAATCCAAATCCTTCCGTCTCTGTAGCAGTATCGACTCCAATCGTCACCGCATCTGAATCTCCGGTGACACAACCTAACACAGTCATAACGCCGTCGTCTCAACCTCAACCTCAAACACCAGCTTCGTCGTACAGAGCCATAGCTCCGCTTCATCGTCATCATCCTCATCAAAATATCTACACTAACCCTTTACCGATTAGGCGTTCGAATTCCGTTACTAATTCGCCTCATCAGCCTCCTCACCCAGACCCGTCTAGTCTGATATACCCGTTTGGTTCTTCGGGTCGAGGGTTTCCGACCCGACCCGTTAGACAGAATTCCAATTCCGTCGCTGATCCAGTTGGTAGTCCTAGTCCAGGTGGGTATACTCCTCGAGGGCCAGTTTACGGATACCACCATGGCCAATTCGTGTCGAATTTGGATCCAATGAATCAGTTCATGAGAGCTGCACATCCTCAGAATCAACAATCTCCTCAACTTGGTTCCGGTCATATGAAAGGAGTTCCTCATTTTTTGCAACCTCGGGCTACTCCTTCTCCAACTTCAATTCTAGACAACAGTGGGCATAAGAAGGCCAGGAGCCGGGATGATGCTCTGGTCCTCGTTAGAAAAAGAAAGGTTAGAATAACCGAGGGAGCTTCTTTATACTCGCTGTGTCGATCTTGGTTGAGAAATGGTGCTCATGAGGGAATTAAGCCGCAGCGAATTGATATGATGACATGTTTGCCAAAGCCTTTACCTGTGGACAAGACGGAGACAAGTTTGCCAAAAGATTTAGTTGAAGAAGCAATTTGCGAAGAAGACAAAGAGGTTTCGTGTTTCTCTGATTTCTTTCTAAAATGGTAA
Protein Sequence
- >AT2G32840.2 MSTPDPNPNPNPNPSVSVAVSTPIVTASESPVTQPNTVITPSSQPQPQTPASSYRAIAPLHRHHPHQNIYTNPLPIRRSNSVTNSPHQPPHPDPSSLIYPFGSSGRGFPTRPVRQNSNSVADPVGSPSPGGYTPRGPVYGYHHGQFVSNLDPMNQFMRAAHPQNQQSPQLGSGHMKGVPHFLQPRATPSPTSILDNSGHKKARSRDDALVLVRKRKVRITEGASLYSLCRSWLRNGAHEGIKPQRIDMMTCLPKPLPVDKTETSLPKDLVEEAICEEDKEVSCFSDFFLKW
- >AT2G32840.1 MSTPDPNPNPNPNPSVSVAVSTPIVTASESPVTQPNTVITPSSQPQPQTPASSYRAIAPLHRHHPHQNIYTNPLPIRRSNSVTNSPHQPPHPDPSSLIYPFGSSGRGFPTRPVRQNSNSVADPVGSPSPGGYTPRGPVYGYHHGQFVSNLDPMNQFMRAAHPQNQQSPQLGSGHMKGVPHFLQPRATPSPTSILDNSGHKKARSRDDALVLVRKRKVRITEGASLYSLCRSWLRNGAHEGIKPQRIDMMTCLPKPLPVDKTETSLPKDLVEEAICEEDKEVSCFSDFFLKW