Gene Details:
- Gene ID: AT2G41945
- Gene Symbol: RED1
- Gene Name: Retarded Embryo Development 1
- Description: transmembrane protein;(source:Araport11)
- TAIR Accession: locus:1006230174
- Genome: Araport11_genome_release
- Species: Arabidopsis thaliana
Transcripts:
Gene Ontology:
- GO:0009793 — acts upstream of or within — embryo development ending in seed dormancy
- GO:0005634 — located in — nucleus
- GO:0010431 — acts upstream of or within — seed maturation
- GO:0003674 — enables — molecular_function
Germplasm Phenotype:
- SALK_022583 — Heterozygotes segregate for collapsed seeds which arrest at the bent cotyledon stage. Homozygous seeds can be rescued if cultured before desiccation.
Literature:
- Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. DOI: 10.1006/jmbi.2000.4315 ; PMID: 11152613
- Retarded Embryo Development 1 (RED1) regulates embryo development, seed maturation and plant growth in Arabidopsis. DOI: 10.1016/j.jgg.2016.04.009 ; PMID: 27477025
- Genome-wide identification of EMBRYO-DEFECTIVE (EMB) genes required for growth and development in Arabidopsis. DOI: 10.1111/nph.16071 ; PMID: 31334862
Sequence:
cDNA Sequence
- >AT2G41945.2 GTGGAGAAGGAACATTCTCGGAGAGAAGAGAGACGGTGATCGGAGAGAAAGAGAGGATGGGAACGAGACAAGTATACGAAGAGAAGCTTCGGCGTGGGAATCTTGATTATGATCCGACTATGAATCCTGGTCTTGGTTCTGCTCGGTGTCCTCGTTGTCTTTCTCTCTTAAACCCTAATTCAGAGAAAGGAGAGTGGACGATAACTCCAGTTTTACACGATGCTGCTGCAGTGGCTGGTTCTGGTATTGGTGGCTTGCTTAGTGCCGTCCATGCTTTCAATACAGGGATCCCCTATCTTCAAAATCGGTTTTCCGGGTCAAAGCGGCTTTCCTTTCTTGTGGGGGTTCCATTGCTTCTAGTATATTCAGGTGTAGGGGCTGCTTTTGGAGGTTATGCACTTCCAAAGTTTGCTCAGCTGACAGTTACCTCGTATTATGCATCTTCAAGTGCTTCACATTATGGAATTTCTATGCTAACCCGGCGTATCGAAGAAGCTCATCTCTCTCGAACTCAGAAAGAAGAGGCTGAGTTTGCACCGTTTGGTCCTTCCCCGTAATATAGACAGCGACTGTCCTGTTCCGCGACTAAAGACTTAAGGCCTTGGGGCATATGGACTTCATTCAAAGTCTGTTCACTGGAGGCAATAAGAAGAAACATGGTCATGTGCCGTGGCTTGTAACCAGTATTTTTATTTTCTTATTATATTTTGAGCATTGTGGTATATGGGGAGAGAGAGAGAGAGATGAACAAGGAAATATGGTAGACAGCTTGTAGTTGATGATTCTCTTTGAACTGCCCAAAAAAAGGTTAGAAAAGAAA
- >AT2G41945.3 GTGGAGAAGGAACATTCTCGGAGAGAAGAGAGACGGTGATCGGAGAGAAAGAGAGGATGGGAACGAGACAAGTATACGAAGAGAAGCTTCGGCGTGGGAATCTTGATTATGATCCGACTATGAATCCTGGTCTTGGTTCTGCTCGGTGTCCTCGTTGTCTTTCTCTCTTAAACCCTAATTCAGAGAAAGGAGAGTGGACGATAACTCCAGTTTTACACGATGCTGCTGCAGTGGCTGGTTCTGGTATTGGTGGCTTGCTTAGTGCCGTCCATGCTTTCAATACAGGGATCCCCTATCTTCAAAATCGGTTTTCCGGGTCAAAGCGGCTTTCCTTTCTTGTGGGGGTTCCATTGCTTCTAGTATATTCAGGTGTAGGGGCTGCTTTTGGAGGTTATGCACTTCCAAAGTTTGCTCAGCTGACAGTTACCTCGTATTATGCATCTTCAAGTGCTTCACATTATGGAATTTCTATGCTAACCCGGCGTATCGAAGAAGCTCATCTCTCTCGAACTCAGAAAGAAGAGGCTGAGTTTGCACCGTTTGGTCCTTCCCCGTAATATAGACAGCGACTGTCCTGTTCCGCGACTAAAGACTTAAGGCCTTGGGGCATATGGACTTCATTCAAAGTCTGTTCACTGGAGGCAATAAGAAGAAACATGGTCATGTGCCGTGGCTTGTAACCAGTATTTTTATTTTCTTATTATATTTTGAGCATTGTGGTATATGGGGAGAGAGAGAGAGAGATGAACAAGGAAATATGGTAGACAGCTTGTAGTTGATGATTCTCTTTGAACTGCCCAAAAAAAGGTTAGAAAAGAAA
- >AT2G41945.1 GTGGAGAAGGAACATTCTCGGAGAGAAGAGAGACGGTGATCGGAGAGAAAGAGAGGATGGGAACGAGACAAGTATACGAAGAGAAGCTTCGGCGTGGGAATCTTGATTATGATCCGACTATGAATCCTGGTCTTGGTTCTGCTCGGTGTCCTCGTTGTCTTTCTCTCTTAAACCCTAATTCAGAGAAAGGAGAGTGGACGATAACTCCAGTTTTACACGATGCTGCTGCAGTGGCTGGTTCTGGTATTGGTGGCTTGCTTAGTGCCGTCCATGCTTTCAATACAGGGATCCCCTATCTTCAAAATCGGTTTTCCGGGTCAAAGCGGCTTTCCTTTCTTGTGGGGGTTCCATTGCTTCTAGTATATTCAGGTGTAGGGGCTGCTTTTGGAGGTTATGCACTTCCAAAGTTTGCTCAGCTGACAGTTACCTCGTATTATGCATCTTCAAGTGCTTCACATTATGGAATTTCTATGCTAACCCGGCGTATCGAAGAAGCTCATCTCTCTCGAACTCAGAAAGAAGAGGCTGAGTTTGCACCGTTTGGTCCTTCCCCGTAATATAGACAGCGACTGTCCTGTTCCGCGACTAAAGACTTAAGGCCTTGGGGCATATGGACTTCATTCAAAGTCTGTTCACTGGAGGCAATAAGAAGAAACATGGTCATGTGCCGTGGCTTGTAACCAGTATTTTTATTTTCTTATTATATTTTGAGCATTGTGGTATATGGGGAGAGAGAGAGAGAGATGAACAAGGAAATATGGTAGACAGCTTGTAGTTGATGATTCTCTTTGAACTGCCCAAAAAAAGGTTAGAAAAGAAA
CDS Sequence
- >AT2G41945.2 ATGGGAACGAGACAAGTATACGAAGAGAAGCTTCGGCGTGGGAATCTTGATTATGATCCGACTATGAATCCTGGTCTTGGTTCTGCTCGGTGTCCTCGTTGTCTTTCTCTCTTAAACCCTAATTCAGAGAAAGGAGAGTGGACGATAACTCCAGTTTTACACGATGCTGCTGCAGTGGCTGGTTCTGGTATTGGTGGCTTGCTTAGTGCCGTCCATGCTTTCAATACAGGGATCCCCTATCTTCAAAATCGGTTTTCCGGGTCAAAGCGGCTTTCCTTTCTTGTGGGGGTTCCATTGCTTCTAGTATATTCAGGTGTAGGGGCTGCTTTTGGAGGTTATGCACTTCCAAAGTTTGCTCAGCTGACAGTTACCTCGTATTATGCATCTTCAAGTGCTTCACATTATGGAATTTCTATGCTAACCCGGCGTATCGAAGAAGCTCATCTCTCTCGAACTCAGAAAGAAGAGGCTGAGTTTGCACCGTTTGGTCCTTCCCCGTAA
- >AT2G41945.3 ATGGGAACGAGACAAGTATACGAAGAGAAGCTTCGGCGTGGGAATCTTGATTATGATCCGACTATGAATCCTGGTCTTGGTTCTGCTCGGTGTCCTCGTTGTCTTTCTCTCTTAAACCCTAATTCAGAGAAAGGAGAGTGGACGATAACTCCAGTTTTACACGATGCTGCTGCAGTGGCTGGTTCTGGTATTGGTGGCTTGCTTAGTGCCGTCCATGCTTTCAATACAGGGATCCCCTATCTTCAAAATCGGTTTTCCGGGTCAAAGCGGCTTTCCTTTCTTGTGGGGGTTCCATTGCTTCTAGTATATTCAGGTGTAGGGGCTGCTTTTGGAGGTTATGCACTTCCAAAGTTTGCTCAGCTGACAGTTACCTCGTATTATGCATCTTCAAGTGCTTCACATTATGGAATTTCTATGCTAACCCGGCGTATCGAAGAAGCTCATCTCTCTCGAACTCAGAAAGAAGAGGCTGAGTTTGCACCGTTTGGTCCTTCCCCGTAA
- >AT2G41945.1 ATGGGAACGAGACAAGTATACGAAGAGAAGCTTCGGCGTGGGAATCTTGATTATGATCCGACTATGAATCCTGGTCTTGGTTCTGCTCGGTGTCCTCGTTGTCTTTCTCTCTTAAACCCTAATTCAGAGAAAGGAGAGTGGACGATAACTCCAGTTTTACACGATGCTGCTGCAGTGGCTGGTTCTGGTATTGGTGGCTTGCTTAGTGCCGTCCATGCTTTCAATACAGGGATCCCCTATCTTCAAAATCGGTTTTCCGGGTCAAAGCGGCTTTCCTTTCTTGTGGGGGTTCCATTGCTTCTAGTATATTCAGGTGTAGGGGCTGCTTTTGGAGGTTATGCACTTCCAAAGTTTGCTCAGCTGACAGTTACCTCGTATTATGCATCTTCAAGTGCTTCACATTATGGAATTTCTATGCTAACCCGGCGTATCGAAGAAGCTCATCTCTCTCGAACTCAGAAAGAAGAGGCTGAGTTTGCACCGTTTGGTCCTTCCCCGTAA
Protein Sequence
- >AT2G41945.2 MGTRQVYEEKLRRGNLDYDPTMNPGLGSARCPRCLSLLNPNSEKGEWTITPVLHDAAAVAGSGIGGLLSAVHAFNTGIPYLQNRFSGSKRLSFLVGVPLLLVYSGVGAAFGGYALPKFAQLTVTSYYASSSASHYGISMLTRRIEEAHLSRTQKEEAEFAPFGPSP
- >AT2G41945.3 MGTRQVYEEKLRRGNLDYDPTMNPGLGSARCPRCLSLLNPNSEKGEWTITPVLHDAAAVAGSGIGGLLSAVHAFNTGIPYLQNRFSGSKRLSFLVGVPLLLVYSGVGAAFGGYALPKFAQLTVTSYYASSSASHYGISMLTRRIEEAHLSRTQKEEAEFAPFGPSP
- >AT2G41945.1 MGTRQVYEEKLRRGNLDYDPTMNPGLGSARCPRCLSLLNPNSEKGEWTITPVLHDAAAVAGSGIGGLLSAVHAFNTGIPYLQNRFSGSKRLSFLVGVPLLLVYSGVGAAFGGYALPKFAQLTVTSYYASSSASHYGISMLTRRIEEAHLSRTQKEEAEFAPFGPSP