Gene Details:
- Gene ID: AT3G07340
- Gene Symbol: CIB3
- Gene Name: CRY2-interacting bHLH 3
- Description: basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
- TAIR Accession: locus:2079676
- Genome: Araport11_genome_release
- Species: Arabidopsis thaliana
Transcripts:
Gene Ontology:
- GO:0006355 — acts upstream of or within — regulation of DNA-templated transcription
- GO:0000976 — enables — transcription cis-regulatory region binding
- GO:0003700 — enables — DNA-binding transcription factor activity
- GO:0006355 — involved in — regulation of DNA-templated transcription
- GO:0046983 — enables — protein dimerization activity
- GO:0005634 — is active in — nucleus
- GO:0005634 — located in — nucleus
Literature:
- Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. DOI: 10.1126/science.290.5499.2105 ; PMID: 11118137
- The basic helix-loop-helix transcription factor family in plants: a genome-wide study of protein structure and functional diversity. DOI: 10.1093/molbev/msg088 ; PMID: 12679534
- The Arabidopsis basic/helix-loop-helix transcription factor family. DOI: 10.1105/tpc.013839 ; PMID: 12897250
- Update on the basic helix-loop-helix transcription factor gene family in Arabidopsis thaliana. DOI: 10.1105/tpc.151140 ; PMID: 14600211
- A global survey of gene regulation during cold acclimation in Arabidopsis thaliana. DOI: 10.1371/journal.pgen.0010026 ; PMID: 16121258
- Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. DOI: 10.1016/j.diff.2010.02.003 ; PMID: 20219281
- Functional compensation of primary and secondary metabolites by duplicate genes in Arabidopsis thaliana. DOI: 10.1093/molbev/msq204 ; PMID: 20736450
- Multiple bHLH proteins form heterodimers to mediate CRY2-dependent regulation of flowering-time in Arabidopsis. DOI: 10.1371/journal.pgen.1003861 ; PMID: 24130508
- An Arabidopsis gene regulatory network for secondary cell wall synthesis. DOI: 10.1038/nature14099 ; PMID: 25533953
- Arabidopsis CIB3 regulates photoperiodic flowering in an FKF1-dependent way. DOI: 10.1093/bbb/zbaa120 ; PMID: 33686404
- Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. DOI: 10.1126/science.290.5499.2105 ; PMID: 11118137
- The basic helix-loop-helix transcription factor family in plants: a genome-wide study of protein structure and functional diversity. DOI: 10.1093/molbev/msg088 ; PMID: 12679534
Sequence:
cDNA Sequence
- >AT3G07340.1 GAAGCTTGTTTCTCCAATTATCTCATTTGGTAAAGACGTTTCATTAGCGATATCGTGTTAACGTCGAAAGTCCTCCTCTCGTTACGGTCCGGTCCGACACAGAAATTTTTATTTAATATTTACTTTATTTTTTGTCCATTTATTAGAAAGAAAGTCATTGATTGGTGCAATTTATTAATATAAATTTATTAAACAACTATATAAACTCCTCATTACTGCCCATTAACGAGCTTCCCTTTTCCTCTGTTCTTCACTTTAAGAAAATTACAAACTTTTATCTTCTATTGGACGAATCTTTGATCTGGTTTTAATTAATCACACGCTTACTTTAGGATTTTTTTACCTGAATTCGAATATATACTTTTGATTTTCATCTTCCGTAGTCCGTACCGTAGAATTGAGGAGCTTCATGGAGAACGAGCTGTTTATGAATGCAGGAGTTTCGCATCCGCCGGTGATGACGTCACCGTCTTCTTCGTCGGCGATGCTTAAGTGGGTTTCAATGGAGACTCAGCCAGTGGATCCAAGTCTCAGTCGCAATCTGTTTTGGGAAAAGTCAACGGAACAGAGCATTTTTGATTCGGCTCTGAGCTCACTCGTCTCTTCTCCTACGCCGTCAAATTCAAACTTTTCGGTTGGCGGAGTAGGTGGAGAAAATGTCATTATGAGAGAGCTCATCGGGAAACTGGGTAATATCGGCGATATCTATGGAATTACGGCGAGCAATGGAAACTCGTGTTACGCAACTCCGATGAGCTCTCCACCGCCTGGAAGTATGATGGAGACGAAAACGACGACGCCGATGGCAGAACTGTCCGGCGACCCGGGATTCGCTGAGAGAGCGGCGAGGTTCTCGTGTTTTGGTAGCCGGAGTTTTAACAGCAGAACAAACTCGCCGTTTCCGATTAATAACGAACCACCCATCACAACCAATGAGAAAATGCCACGTGTATCAAGCAGCCCAGTTTTTAAGCCTCTTGCGTCTCATGTTCCCGCCGGCGAATCGTCCGGTGAACTTTCCCGGAAAAGAAAAACTAAATCCAAGCAGAATTCTCCTTCTGCAGTTTCATCATCAAAGGAGATTGAAGAGAAGGAAGATTCTGATCCAAAGAGATGCAAAAAATCAGAAGAAAATGGAGACAAAACTAAATCAATTGATCCTTACAAAGATTACATTCATGTTAGAGCTCGACGAGGCCAAGCCACCGATAGTCACAGTCTCGCCGAACGAGTTCGAAGAGAGAAAATAAGCGAAAGAATGAAGCTGCTTCAAGATCTTGTCCCTGGATGCAACAAGGTTACTGGAAAAGCACTGATGTTGGATGAAATTATAAACTATGTCCAATCATTGCAACGACAAGTTGAGTTCTTGTCGATGAAGTTATCGTCAGTGAACACCAGGCTGGACTTTAACATGGACGCTCTCTTGTCTAAGGATATATTTCCTTCAAGCAACAATCTAATGCATCATCAACAAGTACTTCAATTAGATTCTTCAGCAGAAACGTTATTGGGTGATCATCACAACAAAAATTTGCAATTGAACCCTGATATTTCTTCTAATAACGTAATAAACCCTTTGGAAACTTCTGAAACTAGAAGCTTCATTTCTCACTTACCAACACTTGCTCATTTCACTGACTCTATTTCTCAGTATTCAACATTTTCCGAAGATGATTTACATAGCATTATTCATATGGGTTTTGCGCAAAACCGTCTCCAAGAATTGAACCAAGGTTCATCAAACCAAGTACCATCGCACATGAAAGCTGAACTTTGATCAACCACTATATGCATTTTTACAAAAATATTGGCGTTTTAAAGGTCTCGAGGATAGAAAGTAAGAAAAGGATTGATGGGTGTACATAACAAGAAATTTGAATTGGACCACACCATATGCGAATTCATTTCTATAATCATCTTCATATACATAACTTCTTCTTTTTATCCTTCCGATTCATTTGTGGTGCTCAATTGTATTGTCATGTTGTTATCCGCTATTCTTCTTCTTATCAGATTCTTTAAACTTTTCTTGTTTGGATTTAATATCATTGTATGTTTTAACCCCACTATAAGTACTATAGCTATAATTCTTCCGAACAACAAGACTGTTTTTATCAAAC
- >AT3G07340.2 GAAGCTTGTTTCTCCAATTATCTCATTTGGTAAAGACGTTTCATTAGCGATATCGTGTTAACGTCGAAAGTCCTCCTCTCGTTACGGTCCGGTCCGACACAGAAATTTTTATTTAATATTTACTTTATTTTTTGTCCATTTATTAGAAAGAAAGTCATTGATTGGTGCAATTTATTAATATAAATTTATTAAACAACTATATAAACTCCTCATTACTGCCCATTAACGAGCTTCCCTTTTCCTCTGTTCTTCACTTTAAGAAAATTACAAACTTTTATCTTCTATTGGACGAATCTTTGATCTGGTTTTAATTAATCACACGCTTACTTTAGGATTTTTTTACCTGAATTCGAATATATACTTTTGATTTTCATCTTCCGTAGTCCGTACCGTAGAATTGAGGAGCTTCATGGAGAACGAGCTGTTTATGAATGCAGGAGTTTCGCATCCGCCGGTGATGACGTCACCGTCTTCTTCGTCGGCGATGCTTAAGTGGGTTTCAATGGAGACTCAGCCAGTGGATCCAAGTCTCAGTCGCAATCTGTTTTGGGAAAAGTCAACGGAACAGAGCATTTTTGATTCGGCTCTGAGCTCACTCGTCTCTTCTCCTACGCCGTCAAATTCAAACTTTTCGGTTGGCGGAGTAGGTGGAGAAAATGTCATTATGAGAGAGCTCATCGGGAAACTGGGTAATATCGGCGATATCTATGGAATTACGGCGAGCAATGGAAACTCGTGTTACGCAACTCCGATGAGCTCTCCACCGCCTGGAAGTATGATGGAGACGAAAACGACGACGCCGATGGCAGAACTGTCCGGCGACCCGGGATTCGCTGAGAGAGCGGCGAGGTTCTCGTGTTTTGGTAGCCGGAGTTTTAACAGCAGAACAAACTCGCCGTTTCCGATTAATAACGAACCACCCATCACAACCAATGAGAAAATGCCACGTGTATCAAGCAGCCCAGTTTTTAAGCCTCTTGCGTCTCATGTTCCCGCCGGCGAATCGTCCGGTGAACTTTCCCGGAAAAGAAAAACTAAATCCAAGCAGAATTCTCCTTCTGCAGTTTCATCATCAAAGGAGATTGAAGAGAAGGAAGATTCTGATCCAAAGAGATGCAAAAAATCAGAAGAAAATGGAGACAAAACTAAATCAATTGATCCTTACAAAGATTACATTCATGTTAGAGCTCGACGAGGCCAAGCCACCGATAGTCACAGTCTCGCCGAACGAGTTCGAAGAGAGAAAATAAGCGAAAGAATGAAGCTGCTTCAAGATCTTGTCCCTGGATGCAACAAGGTTACTGGAAAAGCACTGATGTTGGATGAAATTATAAACTATGTCCAATCATTGCAACGACAAGTTGAGTTCTTGTCGATGAAGTTATCGTCAGTGAACACCAGGCTGGACTTTAACATGGACGCTCTCTTGTCTAAGGATATATTTCCTTCAAGCAACAATCTAATGCATCATCAACAAGTACTTCAATTAGATTCTTCAGCAGAAACGTTATTGGGTGATCATCACAACAAAAATTTGCAATTGAACCCTGATATTTCTTCTAATAACGTAATAAACCCTTTGGAAACTTCTGAAACTAGAAGCTTCATTTCTCACTTACCAACACTTGCTCATTTCACTGACTCTATTTCTCAGTATTCAACATTTTCCGAAGATGATTTACATAGCATTATTCATATGGGTTTTGCGCAAAACCGTCTCCAAGAATTGAACCAAGGTTCATCAAACCAAGTACCATCGCACATGAAAGCTGAACTTTGATCAACCACTATATGCATTTTTACAAAAATATTGGCGTTTTAAAGGTCTCGAGGATAGAAAGTAAGAAAAGGATTGATGGGTGTACATAACAAGAAATTTGAATTGGACCACACCATATGCGAATTCATTTCTATAATCATCTTCATATACATAACTTCTTCTTTTTATCCTTCCGATTCATTTGTGGTGCTCAATTGTATTGTCATGTTGTTATCCGCTATTCTTCTTCTTATCAGATTCTTTAAACTTTTCTTGTTTGGATTTAATATCATTGTATGTTTTAACCCCACTATAAGTACTATAGCTATAATTCTTCCGAACAACAAGACTGTTTTTATCAAAC
CDS Sequence
- >AT3G07340.1 ATGGAGAACGAGCTGTTTATGAATGCAGGAGTTTCGCATCCGCCGGTGATGACGTCACCGTCTTCTTCGTCGGCGATGCTTAAGTGGGTTTCAATGGAGACTCAGCCAGTGGATCCAAGTCTCAGTCGCAATCTGTTTTGGGAAAAGTCAACGGAACAGAGCATTTTTGATTCGGCTCTGAGCTCACTCGTCTCTTCTCCTACGCCGTCAAATTCAAACTTTTCGGTTGGCGGAGTAGGTGGAGAAAATGTCATTATGAGAGAGCTCATCGGGAAACTGGGTAATATCGGCGATATCTATGGAATTACGGCGAGCAATGGAAACTCGTGTTACGCAACTCCGATGAGCTCTCCACCGCCTGGAAGTATGATGGAGACGAAAACGACGACGCCGATGGCAGAACTGTCCGGCGACCCGGGATTCGCTGAGAGAGCGGCGAGGTTCTCGTGTTTTGGTAGCCGGAGTTTTAACAGCAGAACAAACTCGCCGTTTCCGATTAATAACGAACCACCCATCACAACCAATGAGAAAATGCCACGTGTATCAAGCAGCCCAGTTTTTAAGCCTCTTGCGTCTCATGTTCCCGCCGGCGAATCGTCCGGTGAACTTTCCCGGAAAAGAAAAACTAAATCCAAGCAGAATTCTCCTTCTGCAGTTTCATCATCAAAGGAGATTGAAGAGAAGGAAGATTCTGATCCAAAGAGATGCAAAAAATCAGAAGAAAATGGAGACAAAACTAAATCAATTGATCCTTACAAAGATTACATTCATGTTAGAGCTCGACGAGGCCAAGCCACCGATAGTCACAGTCTCGCCGAACGAGTTCGAAGAGAGAAAATAAGCGAAAGAATGAAGCTGCTTCAAGATCTTGTCCCTGGATGCAACAAGGTTACTGGAAAAGCACTGATGTTGGATGAAATTATAAACTATGTCCAATCATTGCAACGACAAGTTGAGTTCTTGTCGATGAAGTTATCGTCAGTGAACACCAGGCTGGACTTTAACATGGACGCTCTCTTGTCTAAGGATATATTTCCTTCAAGCAACAATCTAATGCATCATCAACAAGTACTTCAATTAGATTCTTCAGCAGAAACGTTATTGGGTGATCATCACAACAAAAATTTGCAATTGAACCCTGATATTTCTTCTAATAACGTAATAAACCCTTTGGAAACTTCTGAAACTAGAAGCTTCATTTCTCACTTACCAACACTTGCTCATTTCACTGACTCTATTTCTCAGTATTCAACATTTTCCGAAGATGATTTACATAGCATTATTCATATGGGTTTTGCGCAAAACCGTCTCCAAGAATTGAACCAAGGTTCATCAAACCAAGTACCATCGCACATGAAAGCTGAACTTTGA
- >AT3G07340.2 ATGGAGAACGAGCTGTTTATGAATGCAGGAGTTTCGCATCCGCCGGTGATGACGTCACCGTCTTCTTCGTCGGCGATGCTTAAGTGGGTTTCAATGGAGACTCAGCCAGTGGATCCAAGTCTCAGTCGCAATCTGTTTTGGGAAAAGTCAACGGAACAGAGCATTTTTGATTCGGCTCTGAGCTCACTCGTCTCTTCTCCTACGCCGTCAAATTCAAACTTTTCGGTTGGCGGAGTAGGTGGAGAAAATGTCATTATGAGAGAGCTCATCGGGAAACTGGGTAATATCGGCGATATCTATGGAATTACGGCGAGCAATGGAAACTCGTGTTACGCAACTCCGATGAGCTCTCCACCGCCTGGAAGTATGATGGAGACGAAAACGACGACGCCGATGGCAGAACTGTCCGGCGACCCGGGATTCGCTGAGAGAGCGGCGAGGTTCTCGTGTTTTGGTAGCCGGAGTTTTAACAGCAGAACAAACTCGCCGTTTCCGATTAATAACGAACCACCCATCACAACCAATGAGAAAATGCCACGTGTATCAAGCAGCCCAGTTTTTAAGCCTCTTGCGTCTCATGTTCCCGCCGGCGAATCGTCCGGTGAACTTTCCCGGAAAAGAAAAACTAAATCCAAGCAGAATTCTCCTTCTGCAGTTTCATCATCAAAGGAGATTGAAGAGAAGGAAGATTCTGATCCAAAGAGATGCAAAAAATCAGAAGAAAATGGAGACAAAACTAAATCAATTGATCCTTACAAAGATTACATTCATGTTAGAGCTCGACGAGGCCAAGCCACCGATAGTCACAGTCTCGCCGAACGAGTTCGAAGAGAGAAAATAAGCGAAAGAATGAAGCTGCTTCAAGATCTTGTCCCTGGATGCAACAAGGTTACTGGAAAAGCACTGATGTTGGATGAAATTATAAACTATGTCCAATCATTGCAACGACAAGTTGAGTTCTTGTCGATGAAGTTATCGTCAGTGAACACCAGGCTGGACTTTAACATGGACGCTCTCTTGTCTAAGGATATATTTCCTTCAAGCAACAATCTAATGCATCATCAACAAGTACTTCAATTAGATTCTTCAGCAGAAACGTTATTGGGTGATCATCACAACAAAAATTTGCAATTGAACCCTGATATTTCTTCTAATAACGTAATAAACCCTTTGGAAACTTCTGAAACTAGAAGCTTCATTTCTCACTTACCAACACTTGCTCATTTCACTGACTCTATTTCTCAGTATTCAACATTTTCCGAAGATGATTTACATAGCATTATTCATATGGGTTTTGCGCAAAACCGTCTCCAAGAATTGAACCAAGGTTCATCAAACCAAGTACCATCGCACATGAAAGCTGAACTTTGA
Protein Sequence
- >AT3G07340.1 MENELFMNAGVSHPPVMTSPSSSSAMLKWVSMETQPVDPSLSRNLFWEKSTEQSIFDSALSSLVSSPTPSNSNFSVGGVGGENVIMRELIGKLGNIGDIYGITASNGNSCYATPMSSPPPGSMMETKTTTPMAELSGDPGFAERAARFSCFGSRSFNSRTNSPFPINNEPPITTNEKMPRVSSSPVFKPLASHVPAGESSGELSRKRKTKSKQNSPSAVSSSKEIEEKEDSDPKRCKKSEENGDKTKSIDPYKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLSSVNTRLDFNMDALLSKDIFPSSNNLMHHQQVLQLDSSAETLLGDHHNKNLQLNPDISSNNVINPLETSETRSFISHLPTLAHFTDSISQYSTFSEDDLHSIIHMGFAQNRLQELNQGSSNQVPSHMKAEL
- >AT3G07340.2 MENELFMNAGVSHPPVMTSPSSSSAMLKWVSMETQPVDPSLSRNLFWEKSTEQSIFDSALSSLVSSPTPSNSNFSVGGVGGENVIMRELIGKLGNIGDIYGITASNGNSCYATPMSSPPPGSMMETKTTTPMAELSGDPGFAERAARFSCFGSRSFNSRTNSPFPINNEPPITTNEKMPRVSSSPVFKPLASHVPAGESSGELSRKRKTKSKQNSPSAVSSSKEIEEKEDSDPKRCKKSEENGDKTKSIDPYKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLSSVNTRLDFNMDALLSKDIFPSSNNLMHHQQVLQLDSSAETLLGDHHNKNLQLNPDISSNNVINPLETSETRSFISHLPTLAHFTDSISQYSTFSEDDLHSIIHMGFAQNRLQELNQGSSNQVPSHMKAEL