Gene Details:

• Gene ID: AT3G07750
• Gene Symbol: RRP42
• Gene Name: ribosomal RNA processing 42
• Description: 3-5-exoribonuclease family protein;(source:Araport11)
• TAIR Accession: locus:2077522
• Genome: Araport11_genome_release
• Species: Arabidopsis thaliana

Transcripts:

• AT3G07750.1     AT3G07750.2

Gene Ontology:

• GO:0043928  — involved in — exonucleolytic catabolism of deadenylated mRNA
• GO:0071038  — involved in — nuclear polyadenylation-dependent tRNA catabolic process
• GO:0034427  — involved in — nuclear-transcribed mRNA catabolic process, exonucleolytic, 3-5
• GO:0000176  — part of — nuclear exosome (RNase complex)
• GO:0071035  — involved in — nuclear polyadenylation-dependent rRNA catabolic process
• GO:0034473  — involved in — exonucleolytic trimming to generate mature 3-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) GO:0000467 27813 P nucleobase-containing compound metabolic process IBA none PANTHER:PTN000120504|SGD:S000000631|SGD:S000002688|SGD:S000002269 Communication:501741973 2023-06-07 AT3G07750 locus:2077522 AT3G07750 involved in U1 snRNA 3-end processing
• GO:0034473  — involved in — U4 snRNA 3-end processing GO:0034475 29535 P other metabolic processes IBA none PANTHER:PTN000120504|SGD:S000002688 Communication:501741973 2021-03-31 AT3G07750 locus:2077522 AT3G07750 involved in nuclear-transcribed mRNA catabolic process, exonucleolytic, 3-5 GO:0034427 29449 P other cellular processes IBA none PANTHER:PTN000120504|SGD:S000000631 Communication:501741973 2021-03-31 AT3G07750 locus:2077522 AT3G07750 involved in nuclear polyadenylation-dependent rRNA catabolic process GO:0071035 32918 P other metabolic processes IBA none PANTHER:PTN000120504|SGD:S000000631|UniProtKB:Q06265|SGD:S000002688 Communication:501741973 2023-06-07 AT3G07750 locus:2077522 AT3G07750 involved in nuclear polyadenylation-dependent mRNA catabolic process GO:0071042 32925 P nucleobase-containing compound metabolic process IBA none PANTHER:PTN000120504|SGD:S000000631 Communication:501741973 2021-03-31
• GO:0000467  — involved in — exonucleolytic trimming to generate mature 3-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) GO:0000467 27813 P other cellular processes IBA none PANTHER:PTN000120504|SGD:S000000631|SGD:S000002688|SGD:S000002269 Communication:501741973 2023-06-07 AT3G07750 locus:2077522 AT3G07750 involved in nuclear polyadenylation-dependent mRNA catabolic process GO:0071042 32925 P other cellular processes IBA none PANTHER:PTN000120504|SGD:S000000631 Communication:501741973 2021-03-31 AT3G07750 locus:2077522 AT3G07750 involved in nuclear polyadenylation-dependent mRNA catabolic process GO:0071042 32925 P other metabolic processes IBA none PANTHER:PTN000120504|SGD:S000000631 Communication:501741973 2021-03-31 AT3G07750 locus:2077522 AT3G07750 part of cytoplasmic exosome (RNase complex) GO:0000177 234 C cytoplasm IBA none PANTHER:PTN000120503|UniProtKB:Q583T6|SGD:S000002269|SGD:S000002688|SGD:S000000631 Communication:501741973 2023-06-07 AT3G07750 locus:2077522 AT3G07750 involved in exonucleolytic trimming to generate mature 3-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
• GO:0005737  — located in — cytoplasm
• GO:0071028  — involved in — nuclear mRNA surveillance
• GO:0071042  — involved in — nuclear polyadenylation-dependent mRNA catabolic process
• GO:0000177  — part of — cytoplasmic exosome (RNase complex)
• GO:0034476  — involved in — U4 snRNA 3-end processing GO:0034475 29535 P nucleobase-containing compound metabolic process IBA none PANTHER:PTN000120504|SGD:S000002688 Communication:501741973 2021-03-31 AT3G07750 locus:2077522 AT3G07750 involved in nuclear-transcribed mRNA catabolic process, exonucleolytic, 3-5 GO:0034427 29449 P catabolic process IBA none PANTHER:PTN000120504|SGD:S000000631 Communication:501741973 2021-03-31 AT3G07750 locus:2077522 AT3G07750 part of nuclear exosome (RNase complex) GO:0000176 512 C nucleus IBA none PANTHER:PTN000120503|SGD:S000002688|UniProtKB:Q583T6|FB:FBgn0034065|PomBase:SPBC17D1.03c|UniProtKB:Q06265|SGD:S000000631|PomBase:SPCC757.08|SGD:S000002269|PomBase:SPBC16G5.10 Communication:501741973 2023-06-07 AT3G07750 locus:2077522 AT3G07750 involved in U5 snRNA 3-end processing

Germplasm Phenotype:

• SALK_101771  — IPMS1 mutants grew somewhat slower and had undulated leaves that tended to be slightly chlorotic. Showed an increase in the content of the aliphatic amino acid Val.

Literature:

• Combinatorial microarray analysis revealing arabidopsis genes implicated in cytokinin responses through the His->Asp Phosphorelay circuitry.   DOI:  10.1093/pcp/pci033 ;  PMID:  15695462
• Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection.   DOI:  10.1104/pp.108.121038 ;  PMID:  18650403

Sequence: