Gene Details:
- Gene ID: AT3G08020
- Gene Symbol: PMS2A, TPF2
- Gene Name: PHD domain-containing MAS subunit 2A, TRIPLE PHD FINGERS 2
- Description: PHD finger family protein;(source:Araport11)
- TAIR Accession: locus:2077457
- Genome: Araport11_genome_release
- Species: Arabidopsis thaliana
Transcripts:
Gene Ontology:
- GO:0045944 — involved in — positive regulation of transcription by RNA polymerase II
- GO:0045892 — involved in — negative regulation of DNA-templated transcription
- GO:0005634 — located in — nucleus
- GO:0003712 — enables — transcription coregulator activity
Literature:
- Evaluation and classification of RING-finger domains encoded by the Arabidopsis genome. DOI: 10.1186/gb-2002-3-4-research0016 ; PMID: 11983057
- The TRIPLE PHD FINGERS proteins are required for SWI/SNF complex-mediated +1 nucleosome positioning and transcription start site determination in Arabidopsis. DOI: 10.1093/nar/gkac826 ; PMID: 36189880
- Comprehensive characterization of three classes of Arabidopsis SWI/SNF chromatin remodelling complexes. DOI: 10.1038/s41477-022-01282-z ; PMID: 36471048
- Comprehensive identification of SWI/SNF complex subunits underpins deep eukaryotic ancestry and reveals new plant components. DOI: 10.1038/s42003-022-03490-x ; PMID: 35668117
Sequence:
cDNA Sequence
- >AT3G08020.1 GTTTCTTTGGCTGCATCTTAAAAACATCGTTGATTAAGGTTGAGATGAGAAAAGCACCTTATCTCTGCGTCCAAACCAAAACTCACAGAGCTCACCAAAAGAGACGACCCTTTTTCTACTACACAAAGAAACTACTGATTAATTCATTAATACTAATAGAGTTATTAACATTACCGATCCTTATATTATTATATTAAATATAAAAAAAAAAAAGAGAAAGAAGCGATCTCTAAAAATCAAAATCTCGATTTTTTTTTTTTTTTTTCCGTTTGGAGGCGAGAGGAATAATTTTTGTTGGGGTGAGGATATATGGGATGGCCTTTCACGTAGCTTGTCCAATTACATGTCGTCGGATTTGCCATTGCTCCTTAGGGTTTTCTCGGGATCTCCGTGGAGCCAATGCGAAACATAAGTTTTTGAAAGAGGTTATTCGAGTGGAGGAGTTTCTCAAGGATCCTGCTGTTTCTTCTAATGTTTTTATTGGAGGTACCGTTCAAGTTAGGGTTCCTAAGGTTGTTCCTGCTCCTCAGACGGTTTCGATTTTGGGGGTTGGAGATGGTGCTATTGGTTCTGGTGTTGATGAATTGGCGGAGGAAGCTTCTGCTCAGAAGAAACGTGTTGCTCTTCAGAGACAAGCTGCTGTTACTGTCGAAGCTGCTGAGGATTATGCTCGGAGGTTTGAATCTGGTGTCAATGACCTTACCTCAAACGATCATGCTGGTGAAGAATTAGGCCACTCCGGCATGAATATAATGTGCAGAATGTGCTTCCTAGGAGAAGGTGAAGGAAGTGATAGAGCAAGGAGGATGCTTTCTTGTAAAGACTGTGGAAAGAAGTACCACAAGAATTGTTTAAAGTCTTGGGCTCAACATAGAGATTTATTTCATTGGAGTTCATGGAGTTGTCCCTCTTGCCGGGTTTGTGAGGTCTGCCGTAGAACAGGAGATCCTAACAAGTTCATGTTCTGCAAAAGGTGTGATGCTGCTTACCATTGTTATTGCCAACATCCTCCACACAAGAATGTTAGTTCTGGGCCATATCTCTGCCCAAAGCATACAAGATGCCACAGCTGTGATTCTACTGTCCCTGGAAATGGCCTGAGTGTCAGGTGGTTTTTATCATATACTTGCTGTGATGCTTGTGGCAGATTGTTTGTTAAGGGAAATTATTGCCCTGTATGCTTGAAGGTGTATAGGGATTCGGAATCAACCCCAATGGTATGCTGCGATATTTGTCAACGCTGGGTGCATTGCCATTGTGATGGAATAAGTGATGACAAATATATGCAGTTTCAAGTTGATGGAAAGCTACAATATAAATGTGCCACATGCCGTGGGGAGTGTTATCAGGTGAAGGATCTTCAGGATGCAGTTCAAGAACTTTGGAAGAAAAAAGATGTGGTGGACAAAGAGTTGATTGCTAGTTTAAGGGCTGCTGCTGGTTTGCCAACAGAGGAGGAAATATTTTCGATATTTCCATTTTCAGATGATGAAGAAAATGGACCCGTATCTGGGCGCTCACTGAAGTTTTCGATTAAAGGTTTGGTGGAAAAATCCCCAAAGAAAAGCAAGGAGTATGGGAAACACTCTTCAAGTAAAAAGCATGCTAGTAAAAAAGGTAGTCACACTAAGTTGGAGCCTGAAGTTCATCAGGAGATTGGATCTGAGAGACGCCGACTAGGTGGTGTTAGAATTGATAATGTGGGTTTTCAGATAAACGAACAATCGGACGTTAATTCTTCTGTAGCTGGAATTTGCTCAACACATGAACCTAAGATTGTAAAACACAAGAGGGTTGATGATGTTATGGTGACTGATGAAGAAAAGCCGTCAAGGATAGTGAGAATAAAGTGTAGCAAGCCTCATGATTCTGATAGCGAGGATACCCTAAGGAATGCAGGGGAGGAAAAATCTGTAAAGGCAAAGAAGTTGGTTATTAATCTGGGTGCTAGGAAAATAAATGTCAGTGGTTCTTCGAAGTCCAATGTTGTTTCTCATTTATCGAGAGACAAAGATCAGTCCACTTTGGGTGGGGATAAAGTTGATCAGACTGGGGAAGTAAGAACCCTGAAGATCTCTGGAAGGTTTGGGAAAACTCAATCTGAAGGAAGTAAAGCTACATTTGGGTCAGTCACTCAGTTCCCTGCTGCATCAACAAGTGAAGGAAATCATGTGGATGACAAAACATCCATCTCACCAGCATTACAGAAAGAAGCAAGACCTCTGCTGAAATTTAAACTCAGGAAACCTAATTCAGGAGATCAGACATCTTCGGTTACAACGCAGTCTGAAGATGAAAAATTGAGTTCTGCAAAGGGCCAAAGATCAAAGAGAAAGAGACCTTCAAGCTTAGTGGACATGGCTTCATTGAAAGAAGACGGTGAAGCTACAACACATTCTCATCAGGATAATTCAAGGAACGACGAGATGATGGATGCTAACTGGATTTTGAAAAAGTTGGGTAAAGATTCAATAGGAAAGAGAGTCGAAGTCCATGGATCTCAAAACTCATGGCGTAAGGGAACAGTGACAGACGTTTCTGGAGACACATCCACATTGTCGGTTTCTCTAGATGATGGAAGCATCAAGACATTTGAACTTGGGAAGCACAGTGTCCGCTTCATACCGCAAAAGCAAAAGAGGTCAAGGAGCTGATTGGACCATCGAGCAGCGCTTTAGTCACTAACTTTCTGCATGCGAGCCATGAAGAAGATTTGATTGTTGGGGCATTTTATACTATTTAAGCTCTTTCTGGTGGTAATTATCAGTAAGATGGAAAGTGCCAAACTGTGTAGATATTACTTGTGGTGTTGAAGGTAGCTATGATCTTGTTAAGACTCGATTGGTCGTTCCCTGTAACTTACTCACTTCCTAGGTCCATAGTTTTTGCAGACTCATGTAACAATTTGTTCAAATTCAAGCATGTCAGAAATCTGTTACTAAATGGCAAAATATGGTATAAACATTTATC
CDS Sequence
- >AT3G08020.1 ATGGCCTTTCACGTAGCTTGTCCAATTACATGTCGTCGGATTTGCCATTGCTCCTTAGGGTTTTCTCGGGATCTCCGTGGAGCCAATGCGAAACATAAGTTTTTGAAAGAGGTTATTCGAGTGGAGGAGTTTCTCAAGGATCCTGCTGTTTCTTCTAATGTTTTTATTGGAGGTACCGTTCAAGTTAGGGTTCCTAAGGTTGTTCCTGCTCCTCAGACGGTTTCGATTTTGGGGGTTGGAGATGGTGCTATTGGTTCTGGTGTTGATGAATTGGCGGAGGAAGCTTCTGCTCAGAAGAAACGTGTTGCTCTTCAGAGACAAGCTGCTGTTACTGTCGAAGCTGCTGAGGATTATGCTCGGAGGTTTGAATCTGGTGTCAATGACCTTACCTCAAACGATCATGCTGGTGAAGAATTAGGCCACTCCGGCATGAATATAATGTGCAGAATGTGCTTCCTAGGAGAAGGTGAAGGAAGTGATAGAGCAAGGAGGATGCTTTCTTGTAAAGACTGTGGAAAGAAGTACCACAAGAATTGTTTAAAGTCTTGGGCTCAACATAGAGATTTATTTCATTGGAGTTCATGGAGTTGTCCCTCTTGCCGGGTTTGTGAGGTCTGCCGTAGAACAGGAGATCCTAACAAGTTCATGTTCTGCAAAAGGTGTGATGCTGCTTACCATTGTTATTGCCAACATCCTCCACACAAGAATGTTAGTTCTGGGCCATATCTCTGCCCAAAGCATACAAGATGCCACAGCTGTGATTCTACTGTCCCTGGAAATGGCCTGAGTGTCAGGTGGTTTTTATCATATACTTGCTGTGATGCTTGTGGCAGATTGTTTGTTAAGGGAAATTATTGCCCTGTATGCTTGAAGGTGTATAGGGATTCGGAATCAACCCCAATGGTATGCTGCGATATTTGTCAACGCTGGGTGCATTGCCATTGTGATGGAATAAGTGATGACAAATATATGCAGTTTCAAGTTGATGGAAAGCTACAATATAAATGTGCCACATGCCGTGGGGAGTGTTATCAGGTGAAGGATCTTCAGGATGCAGTTCAAGAACTTTGGAAGAAAAAAGATGTGGTGGACAAAGAGTTGATTGCTAGTTTAAGGGCTGCTGCTGGTTTGCCAACAGAGGAGGAAATATTTTCGATATTTCCATTTTCAGATGATGAAGAAAATGGACCCGTATCTGGGCGCTCACTGAAGTTTTCGATTAAAGGTTTGGTGGAAAAATCCCCAAAGAAAAGCAAGGAGTATGGGAAACACTCTTCAAGTAAAAAGCATGCTAGTAAAAAAGGTAGTCACACTAAGTTGGAGCCTGAAGTTCATCAGGAGATTGGATCTGAGAGACGCCGACTAGGTGGTGTTAGAATTGATAATGTGGGTTTTCAGATAAACGAACAATCGGACGTTAATTCTTCTGTAGCTGGAATTTGCTCAACACATGAACCTAAGATTGTAAAACACAAGAGGGTTGATGATGTTATGGTGACTGATGAAGAAAAGCCGTCAAGGATAGTGAGAATAAAGTGTAGCAAGCCTCATGATTCTGATAGCGAGGATACCCTAAGGAATGCAGGGGAGGAAAAATCTGTAAAGGCAAAGAAGTTGGTTATTAATCTGGGTGCTAGGAAAATAAATGTCAGTGGTTCTTCGAAGTCCAATGTTGTTTCTCATTTATCGAGAGACAAAGATCAGTCCACTTTGGGTGGGGATAAAGTTGATCAGACTGGGGAAGTAAGAACCCTGAAGATCTCTGGAAGGTTTGGGAAAACTCAATCTGAAGGAAGTAAAGCTACATTTGGGTCAGTCACTCAGTTCCCTGCTGCATCAACAAGTGAAGGAAATCATGTGGATGACAAAACATCCATCTCACCAGCATTACAGAAAGAAGCAAGACCTCTGCTGAAATTTAAACTCAGGAAACCTAATTCAGGAGATCAGACATCTTCGGTTACAACGCAGTCTGAAGATGAAAAATTGAGTTCTGCAAAGGGCCAAAGATCAAAGAGAAAGAGACCTTCAAGCTTAGTGGACATGGCTTCATTGAAAGAAGACGGTGAAGCTACAACACATTCTCATCAGGATAATTCAAGGAACGACGAGATGATGGATGCTAACTGGATTTTGAAAAAGTTGGGTAAAGATTCAATAGGAAAGAGAGTCGAAGTCCATGGATCTCAAAACTCATGGCGTAAGGGAACAGTGACAGACGTTTCTGGAGACACATCCACATTGTCGGTTTCTCTAGATGATGGAAGCATCAAGACATTTGAACTTGGGAAGCACAGTGTCCGCTTCATACCGCAAAAGCAAAAGAGGTCAAGGAGCTGA
Protein Sequence
- >AT3G08020.1 MAFHVACPITCRRICHCSLGFSRDLRGANAKHKFLKEVIRVEEFLKDPAVSSNVFIGGTVQVRVPKVVPAPQTVSILGVGDGAIGSGVDELAEEASAQKKRVALQRQAAVTVEAAEDYARRFESGVNDLTSNDHAGEELGHSGMNIMCRMCFLGEGEGSDRARRMLSCKDCGKKYHKNCLKSWAQHRDLFHWSSWSCPSCRVCEVCRRTGDPNKFMFCKRCDAAYHCYCQHPPHKNVSSGPYLCPKHTRCHSCDSTVPGNGLSVRWFLSYTCCDACGRLFVKGNYCPVCLKVYRDSESTPMVCCDICQRWVHCHCDGISDDKYMQFQVDGKLQYKCATCRGECYQVKDLQDAVQELWKKKDVVDKELIASLRAAAGLPTEEEIFSIFPFSDDEENGPVSGRSLKFSIKGLVEKSPKKSKEYGKHSSSKKHASKKGSHTKLEPEVHQEIGSERRRLGGVRIDNVGFQINEQSDVNSSVAGICSTHEPKIVKHKRVDDVMVTDEEKPSRIVRIKCSKPHDSDSEDTLRNAGEEKSVKAKKLVINLGARKINVSGSSKSNVVSHLSRDKDQSTLGGDKVDQTGEVRTLKISGRFGKTQSEGSKATFGSVTQFPAASTSEGNHVDDKTSISPALQKEARPLLKFKLRKPNSGDQTSSVTTQSEDEKLSSAKGQRSKRKRPSSLVDMASLKEDGEATTHSHQDNSRNDEMMDANWILKKLGKDSIGKRVEVHGSQNSWRKGTVTDVSGDTSTLSVSLDDGSIKTFELGKHSVRFIPQKQKRSRS