Gene Details:

• Gene ID: AT3G08940
• Gene Symbol: LHCB4.2
• Gene Name: light harvesting complex photosystem II
• Description: light harvesting complex photosystem II;(source:Araport11)
• TAIR Accession: locus:2097608
• Genome: Araport11_genome_release
• Species: Arabidopsis thaliana

Transcripts:

• AT3G08940.1     AT3G08940.2

Gene Ontology:

• GO:0009941  — located in — chloroplast envelope
• GO:0009535  — located in — chloroplast thylakoid membrane
• GO:0009579  — located in — thylakoid
• GO:0009507  — located in — chloroplast
• GO:0009534  — located in — chloroplast thylakoid
• GO:0016168  — enables — chlorophyll binding
• GO:0009768  — involved in — photosynthesis, light harvesting in photosystem I
• GO:0009416  — involved in — response to light stimulus
• GO:0005829  — located in — cytosol
• GO:0003729  — enables — mRNA binding

Literature:

• A guide to the Lhc genes and their relatives in Arabidopsis/IT>.   DOI:  10.1016/s1360-1385(99)01419-3 ;  PMID:  10366881
• Inactivation of the chloroplast ATP synthase gamma subunit results in high non-photochemical fluorescence quenching and altered nuclear gene expression in Arabidopsis thaliana.   DOI:  10.1074/jbc.M308435200 ;  PMID:  14576160
• In-depth analysis of the thylakoid membrane proteome of Arabidopsis thaliana chloroplasts: new proteins, new functions, and a plastid proteome database.   DOI:  10.1105/tpc.017814 ;  PMID:  14729914
• The roles of segmental and tandem gene duplication in the evolution of large gene families in Arabidopsis thaliana.   DOI:  10.1186/1471-2229-4-10 ;  PMID:  15171794
• Proteomic approach to characterize the supramolecular organization of photosystems in higher plants.   DOI:  10.1016/j.phytochem.2004.04.022 ;  PMID:  15276430
• New functions of the thylakoid membrane proteome of Arabidopsis thaliana revealed by a simple, fast, and versatile fractionation strategy.   DOI:  10.1074/jbc.M406763200 ;  PMID:  15322131
• GENEVESTIGATOR. Arabidopsis microarray database and analysis toolbox.   DOI:  10.1104/pp.104.046367 ;  PMID:  15375207
• Retrograde plastid redox signals in the expression of nuclear genes for chloroplast proteins of Arabidopsis thaliana.   DOI:  10.1074/jbc.M406358200 ;  PMID:  15561727
• The cold-induced early activation of phospholipase C and D pathways determines the response of two distinct clusters of genes in Arabidopsis cell suspensions.   DOI:  10.1104/pp.105.068171 ;  PMID:  16258011
• A coumaroyl-ester-3-hydroxylase insertion mutant reveals the existence of nonredundant meta-hydroxylation pathways and essential roles for phenolic precursors in cell expansion and plant growth.   DOI:  10.1104/pp.105.069690 ;  PMID:  16377748
• Monitoring expression profiles of Arabidopsis genes during cold acclimation and deacclimation using DNA microarrays.   DOI:  10.1007/s10142-005-0014-z ;  PMID:  16463051
• Nuclear photosynthetic gene expression is synergistically modulated by rates of protein synthesis in chloroplasts and mitochondria.   DOI:  10.1105/tpc.105.039073 ;  PMID:  16517761
• The heavy metal hyperaccumulator Thlaspi caerulescens expresses many species-specific genes, as identified by comparative expressed sequence tag analysis.   DOI:  10.1111/j.1469-8137.2006.01714.x ;  PMID:  16684236
• Characterization of an Arabidopsis thaliana mutant lacking a cytosolic non-phosphorylating glyceraldehyde-3-phosphate dehydrogenase.   DOI:  10.1007/s11103-006-0060-5 ;  PMID:  16927206
• State transitions revisited-a buffering system for dynamic low light acclimation of Arabidopsis.   DOI:  10.1007/s11103-006-9044-8 ;  PMID:  16897465
• Functional architecture of the major light-harvesting complex from higher plants.   DOI:  10.1006/jmbi.2000.5179 ;  PMID:  11743731
• PIC1, an ancient permease in Arabidopsis chloroplasts, mediates iron transport.   DOI:  10.1105/tpc.106.047407 ;  PMID:  17337631
• On the functions of the h subunit of eukaryotic initiation factor 3 in late stages of translation initiation.   DOI:  10.1186/gb-2007-8-4-r60 ;  PMID:  17439654
• Membrane proteomic analysis of Arabidopsis thaliana using alternative solubilization techniques.   DOI:  10.1021/pr060525b ;  PMID:  17432890
• Light has a specific role in modulating Arabidopsis gene expression at low temperature.   DOI:  10.1186/1471-2229-8-13 ;  PMID:  18230142
• Genome-wide expression profiling Arabidopsis at the stage of Golovinomyces cichoracearum haustorium formation.   DOI:  10.1104/pp.107.111286 ;  PMID:  18218973
• Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection.   DOI:  10.1104/pp.108.121038 ;  PMID:  18650403
• Quantitative proteomics of a chloroplast SRP54 sorting mutant and its genetic interactions with CLPC1 in Arabidopsis.   DOI:  10.1104/pp.108.124545 ;  PMID:  18633119
• Unique and overlapping expression patterns among members of photosynthesis-associated nuclear gene families in Arabidopsis.   DOI:  10.1104/pp.108.126946 ;  PMID:  18820083
• Site-directed spin-labeling study of the light-harvesting complex CP29.   DOI:  10.1016/j.bpj.2009.01.038 ;  PMID:  19413967
• High light induced disassembly of photosystem II supercomplexes in Arabidopsis requires STN7-dependent phosphorylation of CP29.   DOI:  10.1371/journal.pone.0024565 ;  PMID:  21915352
• Arabidopsis mutants deleted in the light-harvesting protein Lhcb4 have a disrupted photosystem II macrostructure and are defective in photoprotection.   DOI:  10.1105/tpc.111.087320 ;  PMID:  21803939
• Proteome and metabolome profiling of cytokinin action in Arabidopsis identifying and up-regulation.   DOI:  10.1093/jxb/ert227 ;  PMID:  24064926
• Endogenous Arabidopsis messenger RNAs transported to distant tissues.   DOI:  10.1038/nplants.2015.25 ;  PMID:  27247031
• Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method.   DOI:  10.3390/biom10040661 ;  PMID:  32344669
• Loss of a single chlorophyll in CP29 triggers re-organization of the Photosystem II supramolecular assembly.   DOI:  10.1016/j.bbabio.2022.148555 ;  PMID:  35378087
• Proteomic study of the Arabidopsis thaliana chloroplastic envelope membrane utilizing alternatives to traditional two-dimensional electrophoresis.   DOI:  10.1021/pr034025j ;  PMID:  12938931
• In-depth analysis of the thylakoid membrane proteome of Arabidopsis thaliana chloroplasts: new proteins, new functions, and a plastid proteome database.   DOI:  10.1105/tpc.017814 ;  PMID:  14729914
• The Arabidopsis thaliana chloroplast proteome reveals pathway abundance and novel protein functions.   DOI:  10.1016/j.cub.2004.02.039 ;  PMID:  15028209
• New functions of the thylakoid membrane proteome of Arabidopsis thaliana revealed by a simple, fast, and versatile fractionation strategy.   DOI:  10.1074/jbc.M406763200 ;  PMID:  15322131
• Membrane proteomic analysis of Arabidopsis thaliana using alternative solubilization techniques.   DOI:  10.1021/pr060525b ;  PMID:  17432890
• Sorting signals, N-terminal modifications and abundance of the chloroplast proteome.   DOI:  10.1371/journal.pone.0001994 ;  PMID:  18431481
• Proteomic study of the Arabidopsis thaliana chloroplastic envelope membrane utilizing alternatives to traditional two-dimensional electrophoresis.   DOI:  10.1021/pr034025j ;  PMID:  12938931
• In-depth analysis of the thylakoid membrane proteome of Arabidopsis thaliana chloroplasts: new proteins, new functions, and a plastid proteome database.   DOI:  10.1105/tpc.017814 ;  PMID:  14729914
• The Arabidopsis thaliana chloroplast proteome reveals pathway abundance and novel protein functions.   DOI:  10.1016/j.cub.2004.02.039 ;  PMID:  15028209
• New functions of the thylakoid membrane proteome of Arabidopsis thaliana revealed by a simple, fast, and versatile fractionation strategy.   DOI:  10.1074/jbc.M406763200 ;  PMID:  15322131
• Membrane proteomic analysis of Arabidopsis thaliana using alternative solubilization techniques.   DOI:  10.1021/pr060525b ;  PMID:  17432890
• Sorting signals, N-terminal modifications and abundance of the chloroplast proteome.   DOI:  10.1371/journal.pone.0001994 ;  PMID:  18431481
• Quantitative proteomics of a chloroplast SRP54 sorting mutant and its genetic interactions with CLPC1 in Arabidopsis.   DOI:  10.1104/pp.108.124545 ;  PMID:  18633119

Sequence: