Gene Details:
- Gene ID: AT3G16600
- Gene Symbol: FRG3
- Gene Name: SNF2-RING-HELICASE?LIKE 3
- Description: SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein;(source:Araport11)
- TAIR Accession: locus:2089318
- Genome: Araport11_genome_release
- Species: Arabidopsis thaliana
Transcripts:
Gene Ontology:
- GO:0006281 — involved in — DNA repair
- GO:0005634 — located in — nucleus
- GO:0008094 — enables — ATP-dependent activity, acting on DNA
- GO:0005634 — is active in — nucleus
Germplasm Phenotype:
- CS69980 — Reduction in RNA-directed DNA methylation (RdDM).
- CS69981 — Reduction in RNA-directed DNA methylation (RdDM).
Literature:
- Evaluation and classification of RING-finger domains encoded by the Arabidopsis genome. DOI: 10.1186/gb-2002-3-4-research0016 ; PMID: 11983057
- Functional analysis of the RING-type ubiquitin ligase family of Arabidopsis. DOI: 10.1104/pp.104.052423 ; PMID: 15644464
- A transcriptome-based characterization of habituation in plant tissue culture. DOI: 10.1104/pp.105.076059 ; PMID: 16489130
- SNF2 chromatin remodeler-family proteins FRG1 and -2 are required for RNA-directed DNA methylation. DOI: 10.1073/pnas.1420515111 ; PMID: 25425661
- Repertoire of plant RING E3 ubiquitin ligases revisited: New groups counting gene families and single genes. DOI: 10.1371/journal.pone.0203442 ; PMID: 30169501
Sequence:
cDNA Sequence
- >AT3G16600.1 ATGGATGATACAATGGACATGAGTTCAGGTAGTGATGAAGAAGTACAAGAAGAGAAGACCACTGTTAACGAGAGGGTCATCTATCAGGCTGCATTACAAGATCTGAAGCAACCCAAGACCGAAAAGGATCTACCTCCTGGTGTTCTTACAGTTCCTCTTATGAGGCATCAGAAAATTGCATTGAACTGGATGCGTAAGAAAGAAAAAAGAAGCAGGCACTGTTTGGGAGGGATATTAGCAGATGATCAGGGACTTGGTAAAACGATCTCGACGATCTCTCTTATCCTGTTACAAAAGTTGAAGTCACAATCAAAGCAGAGAAAGCGAAAAGGTCAAAACTCTGGTGGTACATTGATTGTTTGTCCAGCAAGTGTTGTAAAACAATGGGCAAGAGAAGTTAAAGAGAAGGTTTCTGATGAACACAAACTCTCTGTTTTAGTCCACCATGGATCTCACAGAACCAAAGATCCAACAGAAATAGCAATATATGATGTGGTCATGACAACTTACGCCATTGTTACAAATGAAGTTCCACAAAACCCTATGCTGAATCGTTATGATAGTATGAGAGGCAGAGAAAGCCTTGACGGATCGAGTTTGATTCAGCCTCACGTTGGTGCACTAGGAAGAGTTAGGTGGTTGAGAGTAGTATTAGATGAAGCTCATACAATTAAAAACCATAGAACCCTAATTGCAAAAGCTTGTTTTAGCCTTAGAGCCAAAAGGAGATGGTGTTTGACTGGAACGCCGATAAAGAACAAAGTAGACGATCTTTATAGCTATTTCAGATTTCTTAGATATCATCCATATGCCATGTGCAATTCATTTCACCAAAGAATCAAAGCTCCAATTGATAAAAAGCCTCTTCATGGTTACAAGAAGCTTCAAGCTATTCTAAGGGGTATAATGTTGCGCCGCACCAAAGAATGGTCTTTCTACAGGAAGCTTGAATTGAATTCACGTTGGAAGTTTGAGGAATATGCTGCTGATGGGACTTTGCATGAACACATGGCTTATCTTTTGGTGATGCTTTTGCGACTACGCCAAGCTTGTAACCATCCACAACTTGTTAACGGATATAGTCACTCAGATACTACAAGAAAAATGTCAGATGGAGTTCGAGTAGCCCCTAGAGAGAATCTAATCATGTTCCTCGATCTCTTGAAATTATCCTCAACCACCTGCTCTGTTTGTAGTGATCCACCAAAAGACCCTGTTGTTACTTTGTGTGGCCATGTGTTTTGTTATGAGTGTGTGTCTGTAAACATTAACGGGGATAACAATACGTGCCCTGCACTTAATTGCCACAGCCAGCTTAAACATGATGTTGTTTTCACTGAATCTGCAGTTAGAAGTTGCATCAACGATTATGATGATCCTGAAGATAAAAATGCTTTAGTTGCATCAAGGCGAGTTTATTTCATCGAAAATCCGAGCTGTGATAGAGATTCTTCAGTCGCTTGCAGAGCAAGGCAGTCCAGACACTCCACCAATAAAGACAATAGTATCAGTGGACTGGTATGTGCGATGTTGATGTCTCTTAAAGCTGGAAACCTTGGATTGAATATGGTAGCTGCAAGTCATGTCATTCTACTGGACCTATGGTGGAATCCAACAACAGAGGATCAAGCTATTGATCGAGCTCATCGTATCGGACAAACTCGAGCTGTTACGGTCACTCGTATTGCCATCAAAAATACCGTTGAGGAACGAATTTTGACTCTTCATGAACGTAAAAGGAACATTGTTGCATCTGCATTGGGTGAAAAAAACTGGCAAAAGTTCTGCGATTCAACTAACACTAGAAGATCTCGAATATCTGTTTTTTGGTGTGTAGAATATCCCAGAGTTTTTATTGATAAGAGGAATAAAACCTTTAGCTATTTAATAAGTCACAAGTGTGAATGTAATGAATAA
CDS Sequence
- >AT3G16600.1 ATGGATGATACAATGGACATGAGTTCAGGTAGTGATGAAGAAGTACAAGAAGAGAAGACCACTGTTAACGAGAGGGTCATCTATCAGGCTGCATTACAAGATCTGAAGCAACCCAAGACCGAAAAGGATCTACCTCCTGGTGTTCTTACAGTTCCTCTTATGAGGCATCAGAAAATTGCATTGAACTGGATGCGTAAGAAAGAAAAAAGAAGCAGGCACTGTTTGGGAGGGATATTAGCAGATGATCAGGGACTTGGTAAAACGATCTCGACGATCTCTCTTATCCTGTTACAAAAGTTGAAGTCACAATCAAAGCAGAGAAAGCGAAAAGGTCAAAACTCTGGTGGTACATTGATTGTTTGTCCAGCAAGTGTTGTAAAACAATGGGCAAGAGAAGTTAAAGAGAAGGTTTCTGATGAACACAAACTCTCTGTTTTAGTCCACCATGGATCTCACAGAACCAAAGATCCAACAGAAATAGCAATATATGATGTGGTCATGACAACTTACGCCATTGTTACAAATGAAGTTCCACAAAACCCTATGCTGAATCGTTATGATAGTATGAGAGGCAGAGAAAGCCTTGACGGATCGAGTTTGATTCAGCCTCACGTTGGTGCACTAGGAAGAGTTAGGTGGTTGAGAGTAGTATTAGATGAAGCTCATACAATTAAAAACCATAGAACCCTAATTGCAAAAGCTTGTTTTAGCCTTAGAGCCAAAAGGAGATGGTGTTTGACTGGAACGCCGATAAAGAACAAAGTAGACGATCTTTATAGCTATTTCAGATTTCTTAGATATCATCCATATGCCATGTGCAATTCATTTCACCAAAGAATCAAAGCTCCAATTGATAAAAAGCCTCTTCATGGTTACAAGAAGCTTCAAGCTATTCTAAGGGGTATAATGTTGCGCCGCACCAAAGAATGGTCTTTCTACAGGAAGCTTGAATTGAATTCACGTTGGAAGTTTGAGGAATATGCTGCTGATGGGACTTTGCATGAACACATGGCTTATCTTTTGGTGATGCTTTTGCGACTACGCCAAGCTTGTAACCATCCACAACTTGTTAACGGATATAGTCACTCAGATACTACAAGAAAAATGTCAGATGGAGTTCGAGTAGCCCCTAGAGAGAATCTAATCATGTTCCTCGATCTCTTGAAATTATCCTCAACCACCTGCTCTGTTTGTAGTGATCCACCAAAAGACCCTGTTGTTACTTTGTGTGGCCATGTGTTTTGTTATGAGTGTGTGTCTGTAAACATTAACGGGGATAACAATACGTGCCCTGCACTTAATTGCCACAGCCAGCTTAAACATGATGTTGTTTTCACTGAATCTGCAGTTAGAAGTTGCATCAACGATTATGATGATCCTGAAGATAAAAATGCTTTAGTTGCATCAAGGCGAGTTTATTTCATCGAAAATCCGAGCTGTGATAGAGATTCTTCAGTCGCTTGCAGAGCAAGGCAGTCCAGACACTCCACCAATAAAGACAATAGTATCAGTGGACTGGTATGTGCGATGTTGATGTCTCTTAAAGCTGGAAACCTTGGATTGAATATGGTAGCTGCAAGTCATGTCATTCTACTGGACCTATGGTGGAATCCAACAACAGAGGATCAAGCTATTGATCGAGCTCATCGTATCGGACAAACTCGAGCTGTTACGGTCACTCGTATTGCCATCAAAAATACCGTTGAGGAACGAATTTTGACTCTTCATGAACGTAAAAGGAACATTGTTGCATCTGCATTGGGTGAAAAAAACTGGCAAAAGTTCTGCGATTCAACTAACACTAGAAGATCTCGAATATCTGTTTTTTGGTGTGTAGAATATCCCAGAGTTTTTATTGATAAGAGGAATAAAACCTTTAGCTATTTAATAAGTCACAAGTGTGAATGTAATGAATAA
Protein Sequence
- >AT3G16600.1 MDDTMDMSSGSDEEVQEEKTTVNERVIYQAALQDLKQPKTEKDLPPGVLTVPLMRHQKIALNWMRKKEKRSRHCLGGILADDQGLGKTISTISLILLQKLKSQSKQRKRKGQNSGGTLIVCPASVVKQWAREVKEKVSDEHKLSVLVHHGSHRTKDPTEIAIYDVVMTTYAIVTNEVPQNPMLNRYDSMRGRESLDGSSLIQPHVGALGRVRWLRVVLDEAHTIKNHRTLIAKACFSLRAKRRWCLTGTPIKNKVDDLYSYFRFLRYHPYAMCNSFHQRIKAPIDKKPLHGYKKLQAILRGIMLRRTKEWSFYRKLELNSRWKFEEYAADGTLHEHMAYLLVMLLRLRQACNHPQLVNGYSHSDTTRKMSDGVRVAPRENLIMFLDLLKLSSTTCSVCSDPPKDPVVTLCGHVFCYECVSVNINGDNNTCPALNCHSQLKHDVVFTESAVRSCINDYDDPEDKNALVASRRVYFIENPSCDRDSSVACRARQSRHSTNKDNSISGLVCAMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAIDRAHRIGQTRAVTVTRIAIKNTVEERILTLHERKRNIVASALGEKNWQKFCDSTNTRRSRISVFWCVEYPRVFIDKRNKTFSYLISHKCECNE