Gene Details:
- Gene ID: AT3G16890
- Gene Symbol: PPR40
- Gene Name: pentatricopeptide (PPR) domain protein 40
- Description: pentatricopeptide (PPR) domain protein 40;(source:Araport11)
- TAIR Accession: locus:2086032
- Genome: Araport11_genome_release
- Species: Arabidopsis thaliana
Transcripts:
Gene Ontology:
- GO:0042775 — acts upstream of or within — mitochondrial ATP synthesis coupled electron transport
- GO:0005739 — located in — mitochondrion
- GO:0009737 — acts upstream of or within — response to abscisic acid
- GO:0006397 — involved in — mRNA processing
- GO:0003729 — enables — mRNA binding
- GO:0006979 — acts upstream of or within — response to oxidative stress
- GO:0005737 — is active in — cytoplasm
- GO:0009651 — acts upstream of or within — response to salt stress
Germplasm Phenotype:
- SALK_071712 — semi-dwarf; enhanced sensitivity to salt, ABA and oxidative stress; reduced electron transport through Complex III (cytochrome c reductase).
- ppr40-1 — semi-dwarf; enhanced sensitivity to salt, ABA and oxidative stress; reduced electron transport through Complex III (cytochrome c reductase).
Literature:
- Inactivation of the chloroplast ATP synthase gamma subunit results in high non-photochemical fluorescence quenching and altered nuclear gene expression in Arabidopsis thaliana. DOI: 10.1074/jbc.M308435200 ; PMID: 14576160
- Arabidopsis PPR40 connects abiotic stress responses to mitochondrial electron transport. DOI: 10.1104/pp.107.111260 ; PMID: 18305213
Sequence:
cDNA Sequence
- >AT3G16890.2 ACACATATTGATATTGGTGTATTAAACAGCGTCGTTTAGGAAACATCGTCTTGAGGTTAGAGACCAAATCAATGTTTCACTTGCACTCAGCTCCGTTCTGGTCACGACATGAGAGGCTTTGCTTCTTCAGCATCTAGAATAGCGACGGCGGCAGCAGCTTCCAAATCACTAAACGCTTCCACATCCGTAAACCCTAAGCTCTCAAAAACCCTAAACTCTTCAGCGTTTTGCAGAATCAAGACAACCCATTACACTCCCTGCGATTTTACCTCTGGGTCTCCAACTTCGACCCGGTTTACGCTAAGGATCAGTCTCTGAAGAGTGTTCTAGGGAACGCACTTTTTCGTAAAGGCCCCTTATTGTTGTCTATGGAATTGCTTAAAGAGATTAGAGATTCAGGGTATCGGATTAGTGATGAATTGATGTGTGTTTTGATCGGAAGCTGGGGAAGATTAGGTTTAGCTAAGTACTGTAATGATGTTTTTGCTCAGATATCTTTTCTTGGAATGAAACCAAGTACAAGGCTTTATAATGCTGTGATTGATGCGTTGGTGAAGTCTAATTCACTTGATTTGGCTTACCTCAAGTTTCAGCAGATGCGTAGTGATGGCTGTAAACCGGATCGGTTTACCTATAATATACTTATACATGGTGTTTGCAAGAAGGGTGTGGTTGATGAAGCTATTCGATTGGTTAAACAGATGGAACAGGAAGGGAATAGACCCAATGTGTTCACATACACGATTTTGATCGACGGGTTTTTGATAGCAGGGAGGGTTGATGAGGCGTTGAAGCAATTGGAGATGATGCGGGTGAGAAAGTTGAATCCTAATGAAGCTACAATCAGAACTTTCGTACACGGGATTTTCCGTTGCTTGCCGCCGTGTAAAGCGTTTGAGGTTTTGGTTGGGTTTATGGAGAAAGACTCAAACTTGCAAAGAGTTGGTTACGATGCTGTGTTGTATTGTCTTTCAAACAACTCAATGGCTAAAGAGACTGGTCAATTCTTGAGGAAGATAGGTGAGAGAGGTTATATTCCGGATAGCTCAACATTCAATGCTGCGATGAGTTGTCTCCTAAAAGGGCATGATCTTGTTGAGACTTGTAGGATATTTGACGGTTTTGTCAGCCGTGGAGTTAAGCCAGGATTCAATGGTTATCTTGTGTTAGTTCAAGCTCTGTTGAATGCTCAGAGGTTCTCTGAAGGTGACCGGTATCTGAAACAAATGGGTGTTGACGGGCTTCTATCAAGTGTATATAGTTATAATGCGGTAATTGACTGTCTCTGCAAGGCTCGACGCATAGAGAATGCAGCTATGTTCTTAACAGAGATGCAGGATAGAGGTATTTCTCCGAATCTCGTAACTTTCAATACCTTTCTGAGCGGTTATAGCGTGAGGGGTGATGTAAAGAAGGTTCACGGCGTGCTAGAGAAGCTTCTTGTACATGGTTTCAAACCAGACGTGATCACTTTCAGTTTGATCATAAACTGTCTTTGCAGAGCAAAAGAAATTAAAGATGCATTTGACTGTTTCAAGGAGATGTTGGAATGGGGTATTGAGCCAAACGAGATCACATACAATATCTTGATTCGCTCCTGTTGTTCCACCGGAGATACCGATAGATCAGTGAAGCTGTTTGCGAAGATGAAGGAAAACGGGTTAAGTCCAGACCTTTATGCGTACAATGCGACTATTCAGAGTTTTTGCAAGATGAGAAAGGTTAAGAAGGCTGAGGAATTGCTTAAAACAATGCTGAGAATTGGTTTGAAACCAGATAACTTTACATATAGCACTCTCATCAAAGCTCTAAGTGAATCTGGAAGAGAGAGTGAAGCAAGAGAGATGTTCAGTTCAATCGAAAGACATGGATGTGTTCCAGATTCATATACTAAGCGTCTTGTTGAAGAACTTGACCTAAGAAAAAGTGGACTCTCGAGAGAAACCGTGTCAGCCTCATAGAAATTGAATCCTCGAGAGTGTGAATATCCTATGAAGGCTTAGAAACCGGAAAAGTGGGTTCGTTTCATTTGGAAATGTCTGAGAAAGAACCCGATCTTTGCCACGGGTTGCCTCTTTGATGCAGACGGAAGAGAAACAGAACATGAGTGCAAAATGCAGAACAGAGTATTAAGTTTTGTTCTTTTGATTGATCAAAGCTTTTATATATTTCTGAGTCCGAGAAAGTGGCGGCAATAGTAATGGCAGTTGGTTGGTACTTGACAGTCAAAAGGCAAAAGATTTTGTATGTTTAGCACTAGATAGCCTTGGCCCTAATTTATACCCTTACCGTGTAACAGTTTAGGAAACAACAGTTTTGCCAGATTATATTGGACATGAGTATTGAATGATTTTGTTGTTTC
- >AT3G16890.1 ACACATATTGATATTGGTGTATTAAACAGCGTCGTTTAGGAAACATCGTCTTGAGGTTAGAGACCAAATCAATGTTTCACTTGCACTCAGCTCCGTTCTGGTCACGACATGAGAGGCTTTGCTTCTTCAGCATCTAGAATAGCGACGGCGGCAGCAGCTTCCAAATCACTAAACGCTTCCACATCCGTAAACCCTAAGCTCTCAAAAACCCTAAACTCTTCAGCGTTTTGCAGAATCAAGACAACCCATTACACTCCCTGCGATTTTACCTCTGGGTCTCCAACTTCGACCCGGTTTACGCTAAGGATCAGTCTCTGAAGAGTGTTCTAGGGAACGCACTTTTTCGTAAAGGCCCCTTATTGTTGTCTATGGAATTGCTTAAAGAGATTAGAGATTCAGGGTATCGGATTAGTGATGAATTGATGTGTGTTTTGATCGGAAGCTGGGGAAGATTAGGTTTAGCTAAGTACTGTAATGATGTTTTTGCTCAGATATCTTTTCTTGGAATGAAACCAAGTACAAGGCTTTATAATGCTGTGATTGATGCGTTGGTGAAGTCTAATTCACTTGATTTGGCTTACCTCAAGTTTCAGCAGATGCGTAGTGATGGCTGTAAACCGGATCGGTTTACCTATAATATACTTATACATGGTGTTTGCAAGAAGGGTGTGGTTGATGAAGCTATTCGATTGGTTAAACAGATGGAACAGGAAGGGAATAGACCCAATGTGTTCACATACACGATTTTGATCGACGGGTTTTTGATAGCAGGGAGGGTTGATGAGGCGTTGAAGCAATTGGAGATGATGCGGGTGAGAAAGTTGAATCCTAATGAAGCTACAATCAGAACTTTCGTACACGGGATTTTCCGTTGCTTGCCGCCGTGTAAAGCGTTTGAGGTTTTGGTTGGGTTTATGGAGAAAGACTCAAACTTGCAAAGAGTTGGTTACGATGCTGTGTTGTATTGTCTTTCAAACAACTCAATGGCTAAAGAGACTGGTCAATTCTTGAGGAAGATAGGTGAGAGAGGTTATATTCCGGATAGCTCAACATTCAATGCTGCGATGAGTTGTCTCCTAAAAGGGCATGATCTTGTTGAGACTTGTAGGATATTTGACGGTTTTGTCAGCCGTGGAGTTAAGCCAGGATTCAATGGTTATCTTGTGTTAGTTCAAGCTCTGTTGAATGCTCAGAGGTTCTCTGAAGGTGACCGGTATCTGAAACAAATGGGTGTTGACGGGCTTCTATCAAGTGTATATAGTTATAATGCGGTAATTGACTGTCTCTGCAAGGCTCGACGCATAGAGAATGCAGCTATGTTCTTAACAGAGATGCAGGATAGAGGTATTTCTCCGAATCTCGTAACTTTCAATACCTTTCTGAGCGGTTATAGCGTGAGGGGTGATGTAAAGAAGGTTCACGGCGTGCTAGAGAAGCTTCTTGTACATGGTTTCAAACCAGACGTGATCACTTTCAGTTTGATCATAAACTGTCTTTGCAGAGCAAAAGAAATTAAAGATGCATTTGACTGTTTCAAGGAGATGTTGGAATGGGGTATTGAGCCAAACGAGATCACATACAATATCTTGATTCGCTCCTGTTGTTCCACCGGAGATACCGATAGATCAGTGAAGCTGTTTGCGAAGATGAAGGAAAACGGGTTAAGTCCAGACCTTTATGCGTACAATGCGACTATTCAGAGTTTTTGCAAGATGAGAAAGGTTAAGAAGGCTGAGGAATTGCTTAAAACAATGCTGAGAATTGGTTTGAAACCAGATAACTTTACATATAGCACTCTCATCAAAGCTCTAAGTGAATCTGGAAGAGAGAGTGAAGCAAGAGAGATGTTCAGTTCAATCGAAAGACATGGATGTGTTCCAGATTCATATACTAAGCGTCTTGTTGAAGAACTTGACCTAAGAAAAAGTGGACTCTCGAGAGAAACCGTGTCAGCCTCATAGAAATTGAATCCTCGAGAGTGTGAATATCCTATGAAGGCTTAGAAACCGGAAAAGTGGGTTCGTTTCATTTGGAAATGTCTGAGAAAGAACCCGATCTTTGCCACGGGTTGCCTCTTTGATGCAGACGGAAGAGAAACAGAACATGAGTGCAAAATGCAGAACAGAGTATTAAGTTTTGTTCTTTTGATTGATCAAAGCTTTTATATATTTCTGAGTCCGAGAAAGTGGCGGCAATAGTAATGGCAGTTGGTTGGTACTTGACAGTCAAAAGGCAAAAGATTTTGTATGTTTAGCACTAGATAGCCTTGGCCCTAATTTATACCCTTACCGTGTAACAGTTTAGGAAACAACAGTTTTGCCAGATTATATTGGACATGAGTATTGAATGATTTTGTTGTTTC
CDS Sequence
- >AT3G16890.2 ATGGAATTGCTTAAAGAGATTAGAGATTCAGGGTATCGGATTAGTGATGAATTGATGTGTGTTTTGATCGGAAGCTGGGGAAGATTAGGTTTAGCTAAGTACTGTAATGATGTTTTTGCTCAGATATCTTTTCTTGGAATGAAACCAAGTACAAGGCTTTATAATGCTGTGATTGATGCGTTGGTGAAGTCTAATTCACTTGATTTGGCTTACCTCAAGTTTCAGCAGATGCGTAGTGATGGCTGTAAACCGGATCGGTTTACCTATAATATACTTATACATGGTGTTTGCAAGAAGGGTGTGGTTGATGAAGCTATTCGATTGGTTAAACAGATGGAACAGGAAGGGAATAGACCCAATGTGTTCACATACACGATTTTGATCGACGGGTTTTTGATAGCAGGGAGGGTTGATGAGGCGTTGAAGCAATTGGAGATGATGCGGGTGAGAAAGTTGAATCCTAATGAAGCTACAATCAGAACTTTCGTACACGGGATTTTCCGTTGCTTGCCGCCGTGTAAAGCGTTTGAGGTTTTGGTTGGGTTTATGGAGAAAGACTCAAACTTGCAAAGAGTTGGTTACGATGCTGTGTTGTATTGTCTTTCAAACAACTCAATGGCTAAAGAGACTGGTCAATTCTTGAGGAAGATAGGTGAGAGAGGTTATATTCCGGATAGCTCAACATTCAATGCTGCGATGAGTTGTCTCCTAAAAGGGCATGATCTTGTTGAGACTTGTAGGATATTTGACGGTTTTGTCAGCCGTGGAGTTAAGCCAGGATTCAATGGTTATCTTGTGTTAGTTCAAGCTCTGTTGAATGCTCAGAGGTTCTCTGAAGGTGACCGGTATCTGAAACAAATGGGTGTTGACGGGCTTCTATCAAGTGTATATAGTTATAATGCGGTAATTGACTGTCTCTGCAAGGCTCGACGCATAGAGAATGCAGCTATGTTCTTAACAGAGATGCAGGATAGAGGTATTTCTCCGAATCTCGTAACTTTCAATACCTTTCTGAGCGGTTATAGCGTGAGGGGTGATGTAAAGAAGGTTCACGGCGTGCTAGAGAAGCTTCTTGTACATGGTTTCAAACCAGACGTGATCACTTTCAGTTTGATCATAAACTGTCTTTGCAGAGCAAAAGAAATTAAAGATGCATTTGACTGTTTCAAGGAGATGTTGGAATGGGGTATTGAGCCAAACGAGATCACATACAATATCTTGATTCGCTCCTGTTGTTCCACCGGAGATACCGATAGATCAGTGAAGCTGTTTGCGAAGATGAAGGAAAACGGGTTAAGTCCAGACCTTTATGCGTACAATGCGACTATTCAGAGTTTTTGCAAGATGAGAAAGGTTAAGAAGGCTGAGGAATTGCTTAAAACAATGCTGAGAATTGGTTTGAAACCAGATAACTTTACATATAGCACTCTCATCAAAGCTCTAAGTGAATCTGGAAGAGAGAGTGAAGCAAGAGAGATGTTCAGTTCAATCGAAAGACATGGATGTGTTCCAGATTCATATACTAAGCGTCTTGTTGAAGAACTTGACCTAAGAAAAAGTGGACTCTCGAGAGAAACCGTGTCAGCCTCATAG
- >AT3G16890.1 ATGGAATTGCTTAAAGAGATTAGAGATTCAGGGTATCGGATTAGTGATGAATTGATGTGTGTTTTGATCGGAAGCTGGGGAAGATTAGGTTTAGCTAAGTACTGTAATGATGTTTTTGCTCAGATATCTTTTCTTGGAATGAAACCAAGTACAAGGCTTTATAATGCTGTGATTGATGCGTTGGTGAAGTCTAATTCACTTGATTTGGCTTACCTCAAGTTTCAGCAGATGCGTAGTGATGGCTGTAAACCGGATCGGTTTACCTATAATATACTTATACATGGTGTTTGCAAGAAGGGTGTGGTTGATGAAGCTATTCGATTGGTTAAACAGATGGAACAGGAAGGGAATAGACCCAATGTGTTCACATACACGATTTTGATCGACGGGTTTTTGATAGCAGGGAGGGTTGATGAGGCGTTGAAGCAATTGGAGATGATGCGGGTGAGAAAGTTGAATCCTAATGAAGCTACAATCAGAACTTTCGTACACGGGATTTTCCGTTGCTTGCCGCCGTGTAAAGCGTTTGAGGTTTTGGTTGGGTTTATGGAGAAAGACTCAAACTTGCAAAGAGTTGGTTACGATGCTGTGTTGTATTGTCTTTCAAACAACTCAATGGCTAAAGAGACTGGTCAATTCTTGAGGAAGATAGGTGAGAGAGGTTATATTCCGGATAGCTCAACATTCAATGCTGCGATGAGTTGTCTCCTAAAAGGGCATGATCTTGTTGAGACTTGTAGGATATTTGACGGTTTTGTCAGCCGTGGAGTTAAGCCAGGATTCAATGGTTATCTTGTGTTAGTTCAAGCTCTGTTGAATGCTCAGAGGTTCTCTGAAGGTGACCGGTATCTGAAACAAATGGGTGTTGACGGGCTTCTATCAAGTGTATATAGTTATAATGCGGTAATTGACTGTCTCTGCAAGGCTCGACGCATAGAGAATGCAGCTATGTTCTTAACAGAGATGCAGGATAGAGGTATTTCTCCGAATCTCGTAACTTTCAATACCTTTCTGAGCGGTTATAGCGTGAGGGGTGATGTAAAGAAGGTTCACGGCGTGCTAGAGAAGCTTCTTGTACATGGTTTCAAACCAGACGTGATCACTTTCAGTTTGATCATAAACTGTCTTTGCAGAGCAAAAGAAATTAAAGATGCATTTGACTGTTTCAAGGAGATGTTGGAATGGGGTATTGAGCCAAACGAGATCACATACAATATCTTGATTCGCTCCTGTTGTTCCACCGGAGATACCGATAGATCAGTGAAGCTGTTTGCGAAGATGAAGGAAAACGGGTTAAGTCCAGACCTTTATGCGTACAATGCGACTATTCAGAGTTTTTGCAAGATGAGAAAGGTTAAGAAGGCTGAGGAATTGCTTAAAACAATGCTGAGAATTGGTTTGAAACCAGATAACTTTACATATAGCACTCTCATCAAAGCTCTAAGTGAATCTGGAAGAGAGAGTGAAGCAAGAGAGATGTTCAGTTCAATCGAAAGACATGGATGTGTTCCAGATTCATATACTAAGCGTCTTGTTGAAGAACTTGACCTAAGAAAAAGTGGACTCTCGAGAGAAACCGTGTCAGCCTCATAG
Protein Sequence
- >AT3G16890.2 MELLKEIRDSGYRISDELMCVLIGSWGRLGLAKYCNDVFAQISFLGMKPSTRLYNAVIDALVKSNSLDLAYLKFQQMRSDGCKPDRFTYNILIHGVCKKGVVDEAIRLVKQMEQEGNRPNVFTYTILIDGFLIAGRVDEALKQLEMMRVRKLNPNEATIRTFVHGIFRCLPPCKAFEVLVGFMEKDSNLQRVGYDAVLYCLSNNSMAKETGQFLRKIGERGYIPDSSTFNAAMSCLLKGHDLVETCRIFDGFVSRGVKPGFNGYLVLVQALLNAQRFSEGDRYLKQMGVDGLLSSVYSYNAVIDCLCKARRIENAAMFLTEMQDRGISPNLVTFNTFLSGYSVRGDVKKVHGVLEKLLVHGFKPDVITFSLIINCLCRAKEIKDAFDCFKEMLEWGIEPNEITYNILIRSCCSTGDTDRSVKLFAKMKENGLSPDLYAYNATIQSFCKMRKVKKAEELLKTMLRIGLKPDNFTYSTLIKALSESGRESEAREMFSSIERHGCVPDSYTKRLVEELDLRKSGLSRETVSAS
- >AT3G16890.1 MELLKEIRDSGYRISDELMCVLIGSWGRLGLAKYCNDVFAQISFLGMKPSTRLYNAVIDALVKSNSLDLAYLKFQQMRSDGCKPDRFTYNILIHGVCKKGVVDEAIRLVKQMEQEGNRPNVFTYTILIDGFLIAGRVDEALKQLEMMRVRKLNPNEATIRTFVHGIFRCLPPCKAFEVLVGFMEKDSNLQRVGYDAVLYCLSNNSMAKETGQFLRKIGERGYIPDSSTFNAAMSCLLKGHDLVETCRIFDGFVSRGVKPGFNGYLVLVQALLNAQRFSEGDRYLKQMGVDGLLSSVYSYNAVIDCLCKARRIENAAMFLTEMQDRGISPNLVTFNTFLSGYSVRGDVKKVHGVLEKLLVHGFKPDVITFSLIINCLCRAKEIKDAFDCFKEMLEWGIEPNEITYNILIRSCCSTGDTDRSVKLFAKMKENGLSPDLYAYNATIQSFCKMRKVKKAEELLKTMLRIGLKPDNFTYSTLIKALSESGRESEAREMFSSIERHGCVPDSYTKRLVEELDLRKSGLSRETVSAS