Gene Details:

Transcripts:

Gene Ontology:

  • GO:0001522  — involved in — pseudouridine synthesis
  • GO:0005739  — located in — mitochondrion
  • GO:0009982  — enables — pseudouridine synthase activity
  • GO:0000455  — involved in — enzyme-directed rRNA pseudouridine synthesis
  • GO:0009507  — located in — chloroplast

Germplasm Phenotype:

  • CS72464  — elevated transient nonphotochemical quenching (NPQ) under nonsaturating light conditions, photosystem II damage and decreased biomass under long-term fluctuating light stress; reduced sodium tolerance
  • SALK_008491  — Transient high NPQ in SALK_008491 is caused by loss of PGDH3.

Literature:

Sequence:

cDNA Sequence
  • >AT3G19440.1 AATGACTATCGGTTCCATCTTTCCCAAGTTCCTCTGCTCCAAAACCTCTTAAACCCTAATTCGAATTTAGCCTAAACCCTAAAATGGCCAAATGGAGACTTGCGACTGCGACGCTCCGTCGACAACTTCAATCCTCATCGCCAACTATCTCTACCTTCAAGAATCCAACCAAAGCATTGTCTGCGGCGGCTCATCAGTCTACTCGCAGCTACAGTACAACTCAGACCGATGATTCGAGAGGGAAATGGTTAACTTTACCTCCTTTTTCTCCCACCATCGATGGCACCGCCGTTGGAAAGGATCTCCTTTCCGACGGAGACTCTGTCAAATCTTCAACGGACAACTCAAAAACGACGGCGCTTAGGTGGATTCTTCGTTGTCGTCCCGATTTACCCAGAACTCTCGTTCAGAAACTCTTCCGCTTAAGACAGGTTAGAAGAGAAATGTCTATGAGTGTTGATGGTGATGAACTACAAAGAAGCCAGCTTAAAAGGGTGGCAGCTAAGGAGTCCTTGAATGTAGGAGATAGAATTTACCTTCCTTTATCGGTTGACAATGATACGCCGCAGACGCCACCTGCTAAGAAAGAAAGCTTTCAATGTAGTGATGAAGAACGCAAATTCGTTTGCAGTTTGGTGTTGTATAAGGATCCAGCCATTATTGTTTTGAATAAACCTCATGGTTTGGCTGTTCAAGGTGGGAGTGGGATCAAAACCAGTATTGATGAACTCGCTGCCTCTTGCTTGAAATTTGATAAATCAGAATCTCCCCGGCTGGTGCACAGACTTGACAGAGACTGTAGTGGACTTTTGGTGTTGGCAAGAACACAGACGGCTGCAACAGTTCTTCATTCCATATTCCGAGAGAAAACAACTGGTGCATCCGCATATGGTGTCAAAAAGAACGTAAAATCCTTGAAAAGAAAATATATGGCACTTGTGATCGGGTGTCCACCACGTCAAAGGGGACAGATTTCAGCGCCACTCAGAAAGGTGGTTGTGGATGATGGAAAATCTGAACGTATCACTGTTAATGACAATGGAGAACTCGTTTCTACTCAGCATGCTATCACCGAATACCGAGTGATTGAATCTTCACCACATGGATACACATGGCTTGAGCTTCGCCCTTTAACCGGGAGAAAACATCAGCTTCGTGTACACTGCGCTGAAGTGCTAGGAACACCGATAGTCGGGGACTACAAATACGGTTGGCAAGCTCATAAAGCCCGGGAACCTTTTGTCTCTTCTGAAAACAACCCAACCAAGCAATCATCATCTCCTTTTGGATTGGATCTGGATGGTGGAGATGTCTCTTCGAAACAGCCACACCTTCATCTCCATTCAAAGCAAATCGATCTGCCAAACATATCACAGCTCTTGGAGAAAATGCAGGTCTCTTCAGACTCTGATATTTCGGATCTCGATAGCCTTAAATTCGATGCTCCATTGCCTAGTCATATGCAACTAAGCTTTAATTTGTTGAAATCTAGAGTCGAAACTTGTGACAAAAATTAGATTTTTTTTCTTACCGAGCTTTCTTCTTTGTGTTCATTGAGGCCCAAGTATTTGTGTATTTGGACCTGAATATTCTCATACAAAGATAAATAATTATAATTAAATGATTTTTCGCATATAATCATTATTGTGGTATGATTAACACAGTTGGTGTGATGACTGATTG
  • >AT3G19440.2 AATGACTATCGGTTCCATCTTTCCCAAGTTCCTCTGCTCCAAAACCTCTTAAACCCTAATTCGAATTTAGCCTAAACCCTAAAATGGCCAAATGGAGACTTGCGACTGCGACGCTCCGTCGACAACTTCAATCCTCATCGCCAACTATCTCTACCTTCAAGAATCCAACCAAAGCATTGTCTGCGGCGGCTCATCAGTCTACTCGCAGCTACAGTACAACTCAGACCGATGATTCGAGAGGGAAATGGTTAACTTTACCTCCTTTTTCTCCCACCATCGATGGCACCGCCGTTGGAAAGGATCTCCTTTCCGACGGAGACTCTGTCAAATCTTCAACGGACAACTCAAAAACGACGGCGCTTAGGTGGATTCTTCGTTGTCGTCCCGATTTACCCAGAACTCTCGTTCAGAAACTCTTCCGCTTAAGACAGGTTAGAAGAGAAATGTCTATGAGTGTTGATGGTGATGAACTACAAAGAAGCCAGCTTAAAAGGGTGGCAGCTAAGGAGTCCTTGAATGTAGGAGATAGAATTTACCTTCCTTTATCGGTTGACAATGATACGCCGCAGACGCCACCTGCTAAGAAAGAAAGCTTTCAATGTAGTGATGAAGAACGCAAATTCGTTTGCAGTTTGGTGTTGTATAAGGATCCAGCCATTATTGTTTTGAATAAACCTCATGGTTTGGCTGTTCAAGGTGGGAGTGGGATCAAAACCAGTATTGATGAACTCGCTGCCTCTTGCTTGAAATTTGATAAATCAGAATCTCCCCGGCTGGTGCACAGACTTGACAGAGACTGTAGTGGACTTTTGGTGTTGGCAAGAACACAGACGGCTGCAACAGTTCTTCATTCCATATTCCGAGAGAAAACAACTGGTGCATCCGCATATGGTGTCAAAAAGAACGTAAAATCCTTGAAAAGAAAATATATGGCACTTGTGATCGGGTGTCCACCACGTCAAAGGGGACAGATTTCAGCGCCACTCAGAAAGGTGGTTGTGGATGATGGAAAATCTGAACGTATCACTGTTAATGACAATGGAGAACTCGTTTCTACTCAGCATGCTATCACCGAATACCGAGTGATTGAATCTTCACCACATGGATACACATGGCTTGAGCTTCGCCCTTTAACCGGGAGAAAACATCAGCTTCGTGTACACTGCGCTGAAGTGCTAGGAACACCGATAGTCGGGGACTACAAATACGGTTGGCAAGCTCATAAAGCCCGGGAACCTTTTGTCTCTTCTGAAAACAACCCAACCAAGCAATCATCATCTCCTTTTGGATTGGATCTGGATGGTGGAGATGTCTCTTCGAAACAGCCACACCTTCATCTCCATTCAAAGCAAATCGATCTGCCAAACATATCACAGCTCTTGGAGAAAATGCAGGTCTCTTCAGACTCTGATATTTCGGATCTCGATAGCCTTAAATTCGATGCTCCATTGCCTAGTCATATGCAACTAAGCTTTAATTTGTTGAAATCTAGAGTCGAAACTTGTGACAAAAATTAGATTTTTTTTCTTACCGAGCTTTCTTCTTTGTGTTCATTGAGGCCCAAGTATTTGTGTATTTGGACCTGAATATTCTCATACAAAGATAAATAATTATAATTAAATGATTTTTCGCATATAATCATTATTGTGGTATGATTAACACAGTTGGTGTGATGACTGATTG
CDS Sequence
  • >AT3G19440.1 ATGGCCAAATGGAGACTTGCGACTGCGACGCTCCGTCGACAACTTCAATCCTCATCGCCAACTATCTCTACCTTCAAGAATCCAACCAAAGCATTGTCTGCGGCGGCTCATCAGTCTACTCGCAGCTACAGTACAACTCAGACCGATGATTCGAGAGGGAAATGGTTAACTTTACCTCCTTTTTCTCCCACCATCGATGGCACCGCCGTTGGAAAGGATCTCCTTTCCGACGGAGACTCTGTCAAATCTTCAACGGACAACTCAAAAACGACGGCGCTTAGGTGGATTCTTCGTTGTCGTCCCGATTTACCCAGAACTCTCGTTCAGAAACTCTTCCGCTTAAGACAGGTTAGAAGAGAAATGTCTATGAGTGTTGATGGTGATGAACTACAAAGAAGCCAGCTTAAAAGGGTGGCAGCTAAGGAGTCCTTGAATGTAGGAGATAGAATTTACCTTCCTTTATCGGTTGACAATGATACGCCGCAGACGCCACCTGCTAAGAAAGAAAGCTTTCAATGTAGTGATGAAGAACGCAAATTCGTTTGCAGTTTGGTGTTGTATAAGGATCCAGCCATTATTGTTTTGAATAAACCTCATGGTTTGGCTGTTCAAGGTGGGAGTGGGATCAAAACCAGTATTGATGAACTCGCTGCCTCTTGCTTGAAATTTGATAAATCAGAATCTCCCCGGCTGGTGCACAGACTTGACAGAGACTGTAGTGGACTTTTGGTGTTGGCAAGAACACAGACGGCTGCAACAGTTCTTCATTCCATATTCCGAGAGAAAACAACTGGTGCATCCGCATATGGTGTCAAAAAGAACGTAAAATCCTTGAAAAGAAAATATATGGCACTTGTGATCGGGTGTCCACCACGTCAAAGGGGACAGATTTCAGCGCCACTCAGAAAGGTGGTTGTGGATGATGGAAAATCTGAACGTATCACTGTTAATGACAATGGAGAACTCGTTTCTACTCAGCATGCTATCACCGAATACCGAGTGATTGAATCTTCACCACATGGATACACATGGCTTGAGCTTCGCCCTTTAACCGGGAGAAAACATCAGCTTCGTGTACACTGCGCTGAAGTGCTAGGAACACCGATAGTCGGGGACTACAAATACGGTTGGCAAGCTCATAAAGCCCGGGAACCTTTTGTCTCTTCTGAAAACAACCCAACCAAGCAATCATCATCTCCTTTTGGATTGGATCTGGATGGTGGAGATGTCTCTTCGAAACAGCCACACCTTCATCTCCATTCAAAGCAAATCGATCTGCCAAACATATCACAGCTCTTGGAGAAAATGCAGGTCTCTTCAGACTCTGATATTTCGGATCTCGATAGCCTTAAATTCGATGCTCCATTGCCTAGTCATATGCAACTAAGCTTTAATTTGTTGAAATCTAGAGTCGAAACTTGTGACAAAAATTAG
  • >AT3G19440.2 ATGGCCAAATGGAGACTTGCGACTGCGACGCTCCGTCGACAACTTCAATCCTCATCGCCAACTATCTCTACCTTCAAGAATCCAACCAAAGCATTGTCTGCGGCGGCTCATCAGTCTACTCGCAGCTACAGTACAACTCAGACCGATGATTCGAGAGGGAAATGGTTAACTTTACCTCCTTTTTCTCCCACCATCGATGGCACCGCCGTTGGAAAGGATCTCCTTTCCGACGGAGACTCTGTCAAATCTTCAACGGACAACTCAAAAACGACGGCGCTTAGGTGGATTCTTCGTTGTCGTCCCGATTTACCCAGAACTCTCGTTCAGAAACTCTTCCGCTTAAGACAGGTTAGAAGAGAAATGTCTATGAGTGTTGATGGTGATGAACTACAAAGAAGCCAGCTTAAAAGGGTGGCAGCTAAGGAGTCCTTGAATGTAGGAGATAGAATTTACCTTCCTTTATCGGTTGACAATGATACGCCGCAGACGCCACCTGCTAAGAAAGAAAGCTTTCAATGTAGTGATGAAGAACGCAAATTCGTTTGCAGTTTGGTGTTGTATAAGGATCCAGCCATTATTGTTTTGAATAAACCTCATGGTTTGGCTGTTCAAGGTGGGAGTGGGATCAAAACCAGTATTGATGAACTCGCTGCCTCTTGCTTGAAATTTGATAAATCAGAATCTCCCCGGCTGGTGCACAGACTTGACAGAGACTGTAGTGGACTTTTGGTGTTGGCAAGAACACAGACGGCTGCAACAGTTCTTCATTCCATATTCCGAGAGAAAACAACTGGTGCATCCGCATATGGTGTCAAAAAGAACGTAAAATCCTTGAAAAGAAAATATATGGCACTTGTGATCGGGTGTCCACCACGTCAAAGGGGACAGATTTCAGCGCCACTCAGAAAGGTGGTTGTGGATGATGGAAAATCTGAACGTATCACTGTTAATGACAATGGAGAACTCGTTTCTACTCAGCATGCTATCACCGAATACCGAGTGATTGAATCTTCACCACATGGATACACATGGCTTGAGCTTCGCCCTTTAACCGGGAGAAAACATCAGCTTCGTGTACACTGCGCTGAAGTGCTAGGAACACCGATAGTCGGGGACTACAAATACGGTTGGCAAGCTCATAAAGCCCGGGAACCTTTTGTCTCTTCTGAAAACAACCCAACCAAGCAATCATCATCTCCTTTTGGATTGGATCTGGATGGTGGAGATGTCTCTTCGAAACAGCCACACCTTCATCTCCATTCAAAGCAAATCGATCTGCCAAACATATCACAGCTCTTGGAGAAAATGCAGGTCTCTTCAGACTCTGATATTTCGGATCTCGATAGCCTTAAATTCGATGCTCCATTGCCTAGTCATATGCAACTAAGCTTTAATTTGTTGAAATCTAGAGTCGAAACTTGTGACAAAAATTAG
Protein Sequence
  • >AT3G19440.1 MAKWRLATATLRRQLQSSSPTISTFKNPTKALSAAAHQSTRSYSTTQTDDSRGKWLTLPPFSPTIDGTAVGKDLLSDGDSVKSSTDNSKTTALRWILRCRPDLPRTLVQKLFRLRQVRREMSMSVDGDELQRSQLKRVAAKESLNVGDRIYLPLSVDNDTPQTPPAKKESFQCSDEERKFVCSLVLYKDPAIIVLNKPHGLAVQGGSGIKTSIDELAASCLKFDKSESPRLVHRLDRDCSGLLVLARTQTAATVLHSIFREKTTGASAYGVKKNVKSLKRKYMALVIGCPPRQRGQISAPLRKVVVDDGKSERITVNDNGELVSTQHAITEYRVIESSPHGYTWLELRPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHKAREPFVSSENNPTKQSSSPFGLDLDGGDVSSKQPHLHLHSKQIDLPNISQLLEKMQVSSDSDISDLDSLKFDAPLPSHMQLSFNLLKSRVETCDKN
  • >AT3G19440.2 MAKWRLATATLRRQLQSSSPTISTFKNPTKALSAAAHQSTRSYSTTQTDDSRGKWLTLPPFSPTIDGTAVGKDLLSDGDSVKSSTDNSKTTALRWILRCRPDLPRTLVQKLFRLRQVRREMSMSVDGDELQRSQLKRVAAKESLNVGDRIYLPLSVDNDTPQTPPAKKESFQCSDEERKFVCSLVLYKDPAIIVLNKPHGLAVQGGSGIKTSIDELAASCLKFDKSESPRLVHRLDRDCSGLLVLARTQTAATVLHSIFREKTTGASAYGVKKNVKSLKRKYMALVIGCPPRQRGQISAPLRKVVVDDGKSERITVNDNGELVSTQHAITEYRVIESSPHGYTWLELRPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHKAREPFVSSENNPTKQSSSPFGLDLDGGDVSSKQPHLHLHSKQIDLPNISQLLEKMQVSSDSDISDLDSLKFDAPLPSHMQLSFNLLKSRVETCDKN