Gene Details:

• Gene ID: AT3G22170
• Gene Symbol: CPD45, FHY3
• Gene Name: CHLOROPLAST DIVISION MUTANT 45, far-red elongated hypocotyls 3
• Description: far-red elongated hypocotyls 3;(source:Araport11)
• TAIR Accession: locus:2090394
• Genome: Araport11_genome_release
• Species: Arabidopsis thaliana

Transcripts:

• AT3G22170.1     AT3G22170.2

Plant Ontology Annotations:

• PO:0000037  — shoot axis apex — ápice del epiblasto (epiblastema) (Spanish, exact), シュート頂、茎頂 (Japanese, exact)
• PO:0008019  — leaf lamina base — base de la lámina de la hoja (Spanish, exact), 葉身基部 (Japanese, exact)
• PO:0009005  — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
• PO:0009006  — shoot system — sistema de epiblasto (epiblastema) (Spanish, exact), シュート系、苗条系 (Japanese, exact), Poaceae crown (related), shoot (related), thalli (related), thallus (related), tree crown (narrow)
• PO:0009009  — plant embryo — embrión (Spanish, exact), 植物胚 (Japanese, exact), germ (related), embryo (broad)
• PO:0009025  — vascular leaf — foliage leaf (exact), hoja vascular (Spanish, exact), leaf, vascular (exact), vascular leaves (exact, plural), 維管束のある葉, または維管束植物の葉 (Japanese, exact), crozier (related), macrophyll (related), megaphyll (related), ascidia (narrow), ascidium (narrow), fiddlehead (narrow), frond (narrow), needle-like leaf (narrow), pitcher (narrow), pitcher blade (narrow), pitcher-blade (narrow), scale-like leaf (narrow), sterile frond (narrow), trophophyll (narrow)
• PO:0009029  — stamen — estambre (Spanish, exact), 雄蕊 (Japanese, exact), Poaceae stamen (narrow), Zea stamen (narrow)
• PO:0009031  — sepal — sépalo (Spanish, exact), がく片 (Japanese, exact)
• PO:0009046  — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
• PO:0009052  — inflorescence flower pedicel — 小花柄 (Japanese, related), pedicelo (Spanish, broad)
• PO:0020030  — cotyledon — cotiledón (Spanish, exact), seed leaf (exact), 子葉 (Japanese, exact)
• PO:0020038  — petiole — pecíolo (Spanish, exact), 葉柄 (Japanese, exact)
• PO:0020100  — hypocotyl — hipocótile (Spanish, exact), 胚軸 (Japanese, exact)
• PO:0020137  — leaf apex — ápice de la hoja (Spanish, exact), 葉先 (Japanese, exact), leaf lamina apex (narrow), phyllid apex (narrow)
• PO:0025022  — collective leaf structure — estructura colectiva de hoja (Spanish, exact), leaf series (exact), 葉が集まった構造 (Japanese, exact), leaf whorl (narrow), rosette (narrow), cycle (broad), verticil (broad)
• PO:0025281  — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
• PO:0025195  — pollen tube cell — célula del tubo polínico (Spanish, exact), 花粉管細胞 (Japanese, exact)
• PO:0000293  — guard cell — célula guardiana (Spanish, exact), occlusive cell (exact), 孔辺細胞 (Japanese, exact)

Gene Ontology:

• GO:0009585  — acts upstream of or within — red, far-red light phototransduction
• GO:0010017  — acts upstream of or within — red or far-red light signaling pathway
• GO:1900056  — acts upstream of or within — negative regulation of leaf senescence
• GO:0008270  — enables — zinc ion binding
• GO:0005634  — located in — nucleus
• GO:0005515  — enables — protein binding
• GO:0010218  — acts upstream of or within — response to far red light
• GO:0045893  — acts upstream of or within — positive regulation of DNA-templated transcription
• GO:0042753  — acts upstream of or within — positive regulation of circadian rhythm

Germplasm Phenotype:

• fhy3-1  — Increased red light signaling in the control of deetiolation. Disrupted rhythmicity of central-clock and clock-output gene expression in constant red light.
• fhy3-3  — Increased red light signaling in the control of deetiolation. Disrupted rhythmicity of central-clock and clock-output gene expression in constant red light.

Function-related keywords:

• shoot axis apex ,  leaf lamina base ,  root ,  shoot system ,  plant embryo ,  vascular leaf ,  stamen ,  sepal ,  flower ,  inflorescence flower pedicel ,  cotyledon ,  petiole ,  hypocotyl ,  leaf apex ,  collective leaf structure ,  pollen ,  pollen tube cell ,  guard cell

Literature:

• Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection.   DOI:  10.1104/pp.108.121038 ;  PMID:  18650403
• Discrete and essential roles of the multiple domains of Arabidopsis FHY3 in mediating phytochrome A signal transduction.   DOI:  10.1104/pp.108.120436 ;  PMID:  18715961
• Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis.   DOI:  10.1104/pp.108.126375 ;  PMID:  18775970
• Light signalling pathways regulating the Mg-chelatase branchpoint of chlorophyll synthesis during de-etiolation in Arabidopsis thaliana.   DOI:  10.1039/b802596g ;  PMID:  18846290
• Arabidopsis COP1/SPA1 complex and FHY1/FHY3 associate with distinct phosphorylated forms of phytochrome A in balancing light signaling.   DOI:  10.1016/j.molcel.2008.08.003 ;  PMID:  18722184
• FHY1 mediates nuclear import of the light-activated phytochrome A photoreceptor.   DOI:  10.1371/journal.pgen.1000143 ;  PMID:  18670649
• Arabidopsis transcription factor ELONGATED HYPOCOTYL5 plays a role in the feedback regulation of phytochrome A signaling.   DOI:  10.1105/tpc.110.075788 ;  PMID:  21097709
• Coordinated transcriptional regulation underlying the circadian clock in Arabidopsis.   DOI:  10.1038/ncb2219 ;  PMID:  21499259
• Genome-wide binding site analysis of FAR-RED ELONGATED HYPOCOTYL3 reveals its novel function in Arabidopsis development.   DOI:  10.1105/tpc.111.085126 ;  PMID:  21803941
• Transposase-derived proteins FHY3/FAR1 interact with PHYTOCHROME-INTERACTING FACTOR1 to regulate chlorophyll biosynthesis by modulating HEMB1 during deetiolation in Arabidopsis.   DOI:  10.1105/tpc.112.097022 ;  PMID:  22634759
• Arabidopsis FHY3 and HY5 positively mediate induction of COP1 transcription in response to photomorphogenic UV-B light.   DOI:  10.1105/tpc.112.103994 ;  PMID:  23150635
• Arabidopsis FRS4/CPD25 and FHY3/CPD45 work cooperatively to promote the expression of the chloroplast division gene ARC5 and chloroplast division.   DOI:  10.1111/tpj.12240 ;  PMID:  23662592
• The UVR8 UV-B Photoreceptor: Perception, Signaling and Response.   DOI:  10.1199/tab.0164 ;  PMID:  23864838
• FAR-RED ELONGATED HYPOCOTYL3 and FAR-RED IMPAIRED RESPONSE1 transcription factors integrate light and abscisic acid signaling in Arabidopsis.   DOI:  10.1104/pp.113.224386 ;  PMID:  23946351
• Arabidopsis FHY3/CPD45 regulates far-red light signaling and chloroplast division in parallel.   DOI:  10.1038/srep09612 ;  PMID:  25872642
• A pair of light signaling factors FHY3 and FAR1 regulates plant immunity by modulating chlorophyll biosynthesis.   DOI:  10.1111/jipb.12369 ;  PMID:  25989254
• Arabidopsis FHY3 and FAR1 Regulate Light-Induced myo-Inositol Biosynthesis and Oxidative Stress Responses by Transcriptional Activation of MIPS1.   DOI:  10.1016/j.molp.2015.12.013 ;  PMID:  26714049
• FHY3 and FAR1 Act Downstream of Light Stable Phytochromes.   DOI:  10.3389/fpls.2016.00175 ;  PMID:  26941752
• FAR-RED ELONGATED HYPOCOTYL3 activates SEPALLATA2 but inhibits CLAVATA3 to regulate meristem determinacy and maintenance in Arabidopsis.   DOI:  10.1073/pnas.1602960113 ;  PMID:  27469166
• Arabidopsis thaliana FAR-RED ELONGATED HYPOCOTYLS3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1) modulate starch synthesis in response to light and sugar.   DOI:  10.1111/nph.14300 ;  PMID:  27859295
• Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.   DOI:  10.3389/fpls.2017.02027 ;  PMID:  29250089
• Arabidopsis FHY3 and FAR1 Regulate the Balance between Growth and Defense Responses under Shade Conditions.   DOI:  10.1105/tpc.18.00991 ;  PMID:  31311834
• FAR-RED ELONGATED HYPOCOTYLS3 negatively regulates shade avoidance responses in Arabidopsis.   DOI:  10.1111/pce.13630 ;  PMID:  31351015
• FHY3 and FAR1 Integrate Light Signals with the miR156-SPL Module-Mediated Aging Pathway to Regulate Arabidopsis Flowering.   DOI:  10.1016/j.molp.2020.01.013 ;  PMID:  32017999
• Transcription Factors FHY3 and FAR1 Regulate Light-Induced CIRCADIAN CLOCK ASSOCIATED1 Gene Expression in Arabidopsis.   DOI:  10.1105/tpc.19.00981 ;  PMID:  32152179
• Arabidopsis FHY3 and FAR1 integrate light and strigolactone signaling to regulate branching.   DOI:  10.1038/s41467-020-15893-7 ;  PMID:  32327664
• Light and Abscisic Acid Coordinately Regulate Greening of Seedlings.   DOI:  10.1104/pp.20.00503 ;  PMID:  32414897
• FHY3 interacts with phytochrome B and regulates seed dormancy and germination.   DOI:  10.1093/plphys/kiab147 ;  PMID:  33764465
• Arabidopsis Circadian Clock Repress Phytochrome a Signaling.   DOI:  10.3389/fpls.2022.809563 ;  PMID:  35645991
• FAR-RED ELONGATED HYPOCOTYL3 increases leaf longevity by delaying senescence in arabidopsis.   DOI:  10.1111/pce.14554 ;  PMID:  36721872
• Functional Mapping of Genes Modulating Plant Shade Avoidance Using Leaf Traits.   DOI:  10.3390/plants12030608 ;  PMID:  36771692
• FHL is required for full phytochrome A signaling and shares overlapping functions with FHY1.   DOI:  10.1111/j.1365-313X.2005.02453.x ;  PMID:  16045472
• Transposase-derived transcription factors regulate light signaling in Arabidopsis.   DOI:  10.1126/science.1146281 ;  PMID:  18033885

Sequence: