Gene Details:
- Gene ID: AT3G43750
- Gene Symbol: RFA1
- Gene Name: RING finger ABA-related 1
- Description: RING/U-box protein with C6HC-type zinc finger domain-containing protein;(source:Araport11)
- TAIR Accession: locus:2101074
- Genome: Araport11_genome_release
- Species: Arabidopsis thaliana
Transcripts:
Gene Ontology:
- GO:0032436 — involved in — positive regulation of proteasomal ubiquitin-dependent protein catabolic process
- GO:0000151 — part of — ubiquitin ligase complex
- GO:0005737 — is active in — cytoplasm
- GO:0005829 — located in — cytosol
- GO:0061630 — enables — ubiquitin protein ligase activity
- GO:0005515 — enables — protein binding
- GO:0005634 — located in — nucleus
- GO:0006511 — involved in — ubiquitin-dependent protein catabolic process
- GO:0031624 — enables — ubiquitin conjugating enzyme binding
- GO:0008270 — enables — zinc ion binding
- GO:0004523 — enables — RNA-DNA hybrid ribonuclease activity
- GO:0003676 — enables — nucleic acid binding
Literature:
- Evaluation and classification of RING-finger domains encoded by the Arabidopsis genome. DOI: 10.1186/gb-2002-3-4-research0016 ; PMID: 11983057
- Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection. DOI: 10.1104/pp.108.121038 ; PMID: 18650403
- RBR-Type E3 Ligases and the Ubiquitin-Conjugating Enzyme UBC26 Regulate Abscisic Acid Receptor Levels and Signaling. DOI: 10.1104/pp.19.00898 ; PMID: 31699847
- Repertoire of plant RING E3 ubiquitin ligases revisited: New groups counting gene families and single genes. DOI: 10.1371/journal.pone.0203442 ; PMID: 30169501
Sequence:
cDNA Sequence
- >AT3G43750.1 ATGGAGGAAAGTACTTTAGTACCATCCGGCGCCATATACAAGCTTTACTTTAAGGGTATAGTAATCGAGGAAACGAGTCAGTTATTGGCGGGATTTGGGGTTGCAATTTTTGACCAAGACGATAAGCTCTTGTTTCAGATGAAGAGACCAATTCATGGCTCGGACATTACGGTTTTGGAGGCTGAACTTACGGCATTGAAACAAGGACTAACCGAAACTATGAAGTTGGGTCTAGATCGTATCTCAATTTGTTGCGATCATGATCATATTTACGAATTGGTCATGGGGAGATCCACGCCGGAGCAAGATAACATTGCCATGCTAATGAATGATGTGCAACGCATGAGACAACAATTGAGATATAGTAATCCTATTCTGGTGACTAGAGATCAAATTAGCTTTGCTTATAAGCTTGCAATGGAAACAGTAGTTTCCGAGATCAGCATATGTATGCCTGCGACTTGCAGCATCTGTTTCAATAATGTTTTGGAAGCTGAGAAGATGTTTTCTGTTGCTATATGCGGTCATCAATTCTGTGTGGAGTGCGTGAAACATTATATAGAAGTGAAGCTACTCGAGGGAGGTGTACCGAGATGTCTTGATTATCAATGCGAGTCTAAGCTAACTCTTACAAGTTGTGGCAATCTTTTAACACCTAAACTAAAGGCGATATGGAAGCAAAGGATCGAAGAGGAGTTGATTCTTGTAGCGGAGAGAGTTTATTGTCCAAACCCGAGGTGCTCGGGATTAATGTCGAAAACCGAGCTCTCTACATCAACTGAAGAAGATGTAAGTACTAGGACTTGTTGTGTTAAATGCGGTGAACCCTTTTGCATCAACTGCAAAGTTCCGTGGCATAGTAACTTGTCATGCGATGATTACAAGAGATTGGGTCCAAATCCTACAAAAAATGATATAAAGCTAAAAGTTTTGGCAAATCAGCAAAAGTGGAGTCAATGTGCAAAGTGCCAACACATGATTGCACGTATCGAAGGATGCAACGTAATAATCTGCAGGTATCATCATCGTTACATTCTCTAA
CDS Sequence
- >AT3G43750.1 ATGGAGGAAAGTACTTTAGTACCATCCGGCGCCATATACAAGCTTTACTTTAAGGGTATAGTAATCGAGGAAACGAGTCAGTTATTGGCGGGATTTGGGGTTGCAATTTTTGACCAAGACGATAAGCTCTTGTTTCAGATGAAGAGACCAATTCATGGCTCGGACATTACGGTTTTGGAGGCTGAACTTACGGCATTGAAACAAGGACTAACCGAAACTATGAAGTTGGGTCTAGATCGTATCTCAATTTGTTGCGATCATGATCATATTTACGAATTGGTCATGGGGAGATCCACGCCGGAGCAAGATAACATTGCCATGCTAATGAATGATGTGCAACGCATGAGACAACAATTGAGATATAGTAATCCTATTCTGGTGACTAGAGATCAAATTAGCTTTGCTTATAAGCTTGCAATGGAAACAGTAGTTTCCGAGATCAGCATATGTATGCCTGCGACTTGCAGCATCTGTTTCAATAATGTTTTGGAAGCTGAGAAGATGTTTTCTGTTGCTATATGCGGTCATCAATTCTGTGTGGAGTGCGTGAAACATTATATAGAAGTGAAGCTACTCGAGGGAGGTGTACCGAGATGTCTTGATTATCAATGCGAGTCTAAGCTAACTCTTACAAGTTGTGGCAATCTTTTAACACCTAAACTAAAGGCGATATGGAAGCAAAGGATCGAAGAGGAGTTGATTCTTGTAGCGGAGAGAGTTTATTGTCCAAACCCGAGGTGCTCGGGATTAATGTCGAAAACCGAGCTCTCTACATCAACTGAAGAAGATGTAAGTACTAGGACTTGTTGTGTTAAATGCGGTGAACCCTTTTGCATCAACTGCAAAGTTCCGTGGCATAGTAACTTGTCATGCGATGATTACAAGAGATTGGGTCCAAATCCTACAAAAAATGATATAAAGCTAAAAGTTTTGGCAAATCAGCAAAAGTGGAGTCAATGTGCAAAGTGCCAACACATGATTGCACGTATCGAAGGATGCAACGTAATAATCTGCAGGTATCATCATCGTTACATTCTCTAA
Protein Sequence
- >AT3G43750.1 MEESTLVPSGAIYKLYFKGIVIEETSQLLAGFGVAIFDQDDKLLFQMKRPIHGSDITVLEAELTALKQGLTETMKLGLDRISICCDHDHIYELVMGRSTPEQDNIAMLMNDVQRMRQQLRYSNPILVTRDQISFAYKLAMETVVSEISICMPATCSICFNNVLEAEKMFSVAICGHQFCVECVKHYIEVKLLEGGVPRCLDYQCESKLTLTSCGNLLTPKLKAIWKQRIEEELILVAERVYCPNPRCSGLMSKTELSTSTEEDVSTRTCCVKCGEPFCINCKVPWHSNLSCDDYKRLGPNPTKNDIKLKVLANQQKWSQCAKCQHMIARIEGCNVIICRYHHRYIL