Gene Details:
- Gene ID: AT3G46610
- Gene Symbol: LPE1
- Gene Name: LOW PHOTOSYNTHETIC EFFICIENCY 1
- Description: Pentatricopeptide repeat (PPR-like) superfamily protein;(source:Araport11)
- TAIR Accession: locus:2075165
- Genome: Araport11_genome_release
- Species: Arabidopsis thaliana
Transcripts:
Gene Ontology:
- GO:0010207 — involved in — photosystem II assembly
- GO:0032544 — acts upstream of or within — plastid translation
- GO:0009535 — located in — chloroplast thylakoid membrane
- GO:0006413 — involved in — translational initiation
- GO:0010207 — acts upstream of or within — photosystem II assembly
- GO:0005739 — located in — mitochondrion
- GO:0003723 — enables — RNA binding
- GO:0009416 — involved in — response to light stimulus
- GO:0009570 — located in — chloroplast stroma
- GO:0043022 — enables — ribosome binding
- GO:0003729 — enables — mRNA binding
- GO:0008494 — enables — translation activator activity
- GO:0005515 — enables — protein binding
Literature:
- LOW PHOTOSYNTHETIC EFFICIENCY 1 is required for light-regulated photosystem II biogenesis in Arabidopsis. DOI: 10.1073/pnas.1807364115 ; PMID: 29891689
- The Arabidopsis pentatricopeptide repeat protein LPE1 and its maize ortholog are required for translation of the chloroplast psbJ RNA. DOI: 10.1111/tpj.14308 ; PMID: 30844105
- Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method. DOI: 10.3390/biom10040661 ; PMID: 32344669
Sequence:
cDNA Sequence
- >AT3G46610.1 CAAAAATTCTATCTTCTTCTTCGCGGCTCTGAATCCGCCATTGAAGTTATTTTCAAGCCCTCCTCAATTTTCGTTTTTGTTCAATATTAATTTGTAAGAGATCTTTACGCTTCAGTTTCTGAAAGAACTTTGCGCTTCTGATTTTGCAAAATTGGAAGAGAGTGCTTCCGTTGCGCTTTTGAAGCGTGAAATCGTGTGTCTTTTGACGCTTCCATGCTACATAACGCTAGTTGTGAGATTGTGTTTGGAAAAAGATGCAAGCTTTAAGCATTTTGCCATTAAAGTCTGGTCTTTTAGTTGGATCAAGATTGGAATTTGAGTTGGATTGTTCTTGTTTTGTAGTTAGCCCTAAGACTACTAGAAAGAGACTTTGCTTTCTTGAACAGGCTTGCTTCGGTAGTAGTAGTAGTATCTCTAGCTTCATCTTCGTTTCGAGTAACAGGAAAGTTCTGTTTTTGTGTGAGCCAAAGAGAAGTTTGTTGGGATCATCGTTTGGGGTAGGATGGGCCACTGAGCAACGAGAGCTCGAGCTCGGGGAAGAAGAAGTTTCCACGGAAGATTTAAGTTCAGCAAATGGAGGAGAAAAGAACAATTTAAGAGTTGATGTTAGAGAATTAGCGTTTAGTTTACGAGCTGCTAAGACAGCTGATGATGTGGATGCTGTTCTCAAGGACAAGGGAGAGTTGCCTCTGCAAGTCTTTTGTGCTATGATAAAGGGTTTTGGCAAGGACAAGAGATTGAAGCCTGCGGTAGCTGTAGTAGATTGGCTTAAGAGGAAGAAGAGTGAATCAGGCGGTGTCATAGGTCCAAATCTTTTTATATATAACAGCCTTTTGGGTGCTATGAGAGGGTTTGGGGAAGCAGAGAAGATACTGAAAGATATGGAGGAAGAAGGGATTGTTCCAAACATTGTTACTTACAATACTTTGATGGTTATTTACATGGAGGAAGGTGAGTTTCTCAAGGCTCTTGGGATTCTTGATTTAACCAAGGAAAAGGGTTTTGAGCCTAACCCGATTACATATTCAACGGCTTTGCTTGTTTACAGAAGAATGGAAGACGGTATGGGAGCTTTAGAGTTCTTTGTTGAATTGAGAGAGAAATACGCAAAGAGGGAAATAGGGAATGATGTTGGTTACGATTGGGAATTTGAGTTTGTTAAGCTTGAGAACTTTATTGGTAGAATATGCTACCAAGTGATGAGGCGGTGGTTGGTGAAAGATGATAATTGGACTACTAGAGTGTTGAAGCTTTTGAATGCAATGGACAGTGCAGGGGTTAGACCGAGTAGGGAAGAGCACGAGAGGCTTATATGGGCATGTACTCGTGAAGAGCATTATATTGTTGGTAAAGAGTTGTATAAAAGAATCAGAGAGAGGTTTTCTGAGATAAGTCTGTCTGTTTGCAACCATTTGATTTGGCTGATGGGTAAGGCTAAGAAATGGTGGGCAGCGTTGGAGATCTACGAGGATCTTCTTGACGAAGGACCTGAACCTAACAATTTGTCTTATGAGTTAGTGGTCTCTCATTTCAATATCTTGCTGAGTGCAGCTAGCAAGAGAGGGATATGGAGATGGGGAGTTAGGTTACTTAACAAAATGGAAGATAAAGGATTGAAACCGCAGAGGAGACATTGGAACGCGGTTCTTGTAGCATGTTCAAAAGCCTCTGAGACCACAGCTGCGATCCAAATCTTTAAAGCAATGGTTGACAATGGTGAAAAGCCAACGGTCATCTCATACGGTGCACTACTCAGTGCTCTTGAGAAAGGGAAGCTATATGATGAGGCGTTTCGGGTTTGGAACCATATGATTAAGGTAGGGATTGAGCCAAATCTTTACGCGTACACAACAATGGCTTCAGTTTTGACAGGACAGCAAAAGTTCAATCTTTTGGATACCCTTCTCAAGGAAATGGCTTCAAAGGGTATTGAACCGAGCGTTGTGACTTTCAACGCGGTTATAAGTGGTTGCGCGAGGAACGGGTTAAGTGGTGTGGCTTATGAGTGGTTTCATAGAATGAAAAGTGAGAATGTTGAGCCTAACGAGATAACTTACGAGATGTTGATTGAGGCTCTTGCAAATGATGCAAAGCCAAGGCTTGCTTATGAGTTACATGTGAAGGCTCAAAACGAAGGGCTTAAACTCTCTTCTAAGCCATATGATGCGGTTGTTAAATCAGCTGAGACTTATGGAGCCACCATTGATCTTAATCTTTTGGGTCCTCGACCAGACAAAAAGAATAGACCTTAGTCTGACGAAAACACATTGTACAAGGTTACCGTGGGGTAAGGCGCATCCAAGGACCCTTAAAGGCAAGAAAATTGCCATTACAGGGAAGAAGAAAGTTTCCAAGTTTCCAGCAAGAAACAGCATAA
- >AT3G46610.2 CAAAAATTCTATCTTCTTCTTCGCGGCTCTGAATCCGCCATTGAAGTTATTTTCAAGCCCTCCTCAATTTTCGTTTTTGTTCAATATTAATTTGTAAGAGATCTTTACGCTTCAGTTTCTGAAAGAACTTTGCGCTTCTGATTTTGCAAAATTGGAAGAGAGTGCTTCCGTTGCGCTTTTGAAGCGTGAAATCGTGTGTCTTTTGACGCTTCCATGCTACATAACGCTAGTTGTGAGATTGTGTTTGGAAAAAGATGCAAGCTTTAAGCATTTTGCCATTAAAGTCTGGTCTTTTAGTTGGATCAAGATTGGAATTTGAGTTGGATTGTTCTTGTTTTGTAGTTAGCCCTAAGACTACTAGAAAGAGACTTTGCTTTCTTGAACAGGCTTGCTTCGGTAGTAGTAGTAGTATCTCTAGCTTCATCTTCGTTTCGAGTAACAGGAAAGTTCTGTTTTTGTGTGAGCCAAAGAGAAGTTTGTTGGGATCATCGTTTGGGGTAGGATGGGCCACTGAGCAACGAGAGCTCGAGCTCGGGGAAGAAGAAGTTTCCACGGAAGATTTAAGTTCAGCAAATGGAGGAGAAAAGAACAATTTAAGAGTTGATGTTAGAGAATTAGCGTTTAGTTTACGAGCTGCTAAGACAGCTGATGATGTGGATGCTGTTCTCAAGGACAAGGGAGAGTTGCCTCTGCAAGTCTTTTGTGCTATGATAAAGGGTTTTGGCAAGGACAAGAGATTGAAGCCTGCGGTAGCTGTAGTAGATTGGCTTAAGAGGAAGAAGAGTGAATCAGGCGGTGTCATAGGTCCAAATCTTTTTATATATAACAGCCTTTTGGGTGCTATGAGAGGGTTTGGGGAAGCAGAGAAGATACTGAAAGATATGGAGGAAGAAGGGATTGTTCCAAACATTGTTACTTACAATACTTTGATGGTTATTTACATGGAGGAAGGTGAGTTTCTCAAGGCTCTTGGGATTCTTGATTTAACCAAGGAAAAGGGTTTTGAGCCTAACCCGATTACATATTCAACGGCTTTGCTTGTTTACAGAAGAATGGAAGACGGTATGGGAGCTTTAGAGTTCTTTGTTGAATTGAGAGAGAAATACGCAAAGAGGGAAATAGGGAATGATGTTGGTTACGATTGGGAATTTGAGTTTGTTAAGCTTGAGAACTTTATTGGTAGAATATGCTACCAAGTGATGAGGCGGTGGTTGGTGAAAGATGATAATTGGACTACTAGAGTGTTGAAGCTTTTGAATGCAATGGACAGTGCAGGGGTTAGACCGAGTAGGGAAGAGCACGAGAGGCTTATATGGGCATGTACTCGTGAAGAGCATTATATTGTTGGTAAAGAGTTGTATAAAAGAATCAGAGAGAGGTTTTCTGAGATAAGTCTGTCTGTTTGCAACCATTTGATTTGGCTGATGGGTAAGGCTAAGAAATGGTGGGCAGCGTTGGAGATCTACGAGGATCTTCTTGACGAAGGACCTGAACCTAACAATTTGTCTTATGAGTTAGTGGTCTCTCATTTCAATATCTTGCTGAGTGCAGCTAGCAAGAGAGGGATATGGAGATGGGGAGTTAGGTTACTTAACAAAATGGAAGATAAAGGATTGAAACCGCAGAGGAGACATTGGAACGCGGTTCTTGTAGCATGTTCAAAAGCCTCTGAGACCACAGCTGCGATCCAAATCTTTAAAGCAATGGTTGACAATGGTGAAAAGCCAACGGTCATCTCATACGGTGCACTACTCAGTGCTCTTGAGAAAGGGAAGCTATATGATGAGGCGTTTCGGGTTTGGAACCATATGATTAAGGTAGGGATTGAGCCAAATCTTTACGCGTACACAACAATGGCTTCAGTTTTGACAGGACAGCAAAAGTTCAATCTTTTGGATACCCTTCTCAAGGAAATGGCTTCAAAGGGTATTGAACCGAGCGTTGTGACTTTCAACGCGGTTATAAGTGGTTGCGCGAGGAACGGGTTAAGTGGTGTGGCTTATGAGTGGTTTCATAGAATGAAAAGTGAGAATGTTGAGCCTAACGAGATAACTTACGAGATGTTGATTGAGGCTCTTGCAAATGATGCAAAGCCAAGGCTTGCTTATGAGTTACATGTGAAGGCTCAAAACGAAGGGCTTAAACTCTCTTCTAAGCCATATGATGCGGTTGTTAAATCAGCTGAGACTTATGGAGCCACCATTGATCTTAATCTTTTGGGTCCTCGACCAGACAAAAAGAATAGACCTTAGTCTGACGAAAACACATTGTACAAGGTTACCGTGGGGTAAGGCGCATCCAAGGACCCTTAAAGGCAAGAAAATTGCCATTACAGGGAAGAAGAAAGTTTCCAAGTTTCCAGCAAGAAACAGCATAA
CDS Sequence
- >AT3G46610.1 ATGCAAGCTTTAAGCATTTTGCCATTAAAGTCTGGTCTTTTAGTTGGATCAAGATTGGAATTTGAGTTGGATTGTTCTTGTTTTGTAGTTAGCCCTAAGACTACTAGAAAGAGACTTTGCTTTCTTGAACAGGCTTGCTTCGGTAGTAGTAGTAGTATCTCTAGCTTCATCTTCGTTTCGAGTAACAGGAAAGTTCTGTTTTTGTGTGAGCCAAAGAGAAGTTTGTTGGGATCATCGTTTGGGGTAGGATGGGCCACTGAGCAACGAGAGCTCGAGCTCGGGGAAGAAGAAGTTTCCACGGAAGATTTAAGTTCAGCAAATGGAGGAGAAAAGAACAATTTAAGAGTTGATGTTAGAGAATTAGCGTTTAGTTTACGAGCTGCTAAGACAGCTGATGATGTGGATGCTGTTCTCAAGGACAAGGGAGAGTTGCCTCTGCAAGTCTTTTGTGCTATGATAAAGGGTTTTGGCAAGGACAAGAGATTGAAGCCTGCGGTAGCTGTAGTAGATTGGCTTAAGAGGAAGAAGAGTGAATCAGGCGGTGTCATAGGTCCAAATCTTTTTATATATAACAGCCTTTTGGGTGCTATGAGAGGGTTTGGGGAAGCAGAGAAGATACTGAAAGATATGGAGGAAGAAGGGATTGTTCCAAACATTGTTACTTACAATACTTTGATGGTTATTTACATGGAGGAAGGTGAGTTTCTCAAGGCTCTTGGGATTCTTGATTTAACCAAGGAAAAGGGTTTTGAGCCTAACCCGATTACATATTCAACGGCTTTGCTTGTTTACAGAAGAATGGAAGACGGTATGGGAGCTTTAGAGTTCTTTGTTGAATTGAGAGAGAAATACGCAAAGAGGGAAATAGGGAATGATGTTGGTTACGATTGGGAATTTGAGTTTGTTAAGCTTGAGAACTTTATTGGTAGAATATGCTACCAAGTGATGAGGCGGTGGTTGGTGAAAGATGATAATTGGACTACTAGAGTGTTGAAGCTTTTGAATGCAATGGACAGTGCAGGGGTTAGACCGAGTAGGGAAGAGCACGAGAGGCTTATATGGGCATGTACTCGTGAAGAGCATTATATTGTTGGTAAAGAGTTGTATAAAAGAATCAGAGAGAGGTTTTCTGAGATAAGTCTGTCTGTTTGCAACCATTTGATTTGGCTGATGGGTAAGGCTAAGAAATGGTGGGCAGCGTTGGAGATCTACGAGGATCTTCTTGACGAAGGACCTGAACCTAACAATTTGTCTTATGAGTTAGTGGTCTCTCATTTCAATATCTTGCTGAGTGCAGCTAGCAAGAGAGGGATATGGAGATGGGGAGTTAGGTTACTTAACAAAATGGAAGATAAAGGATTGAAACCGCAGAGGAGACATTGGAACGCGGTTCTTGTAGCATGTTCAAAAGCCTCTGAGACCACAGCTGCGATCCAAATCTTTAAAGCAATGGTTGACAATGGTGAAAAGCCAACGGTCATCTCATACGGTGCACTACTCAGTGCTCTTGAGAAAGGGAAGCTATATGATGAGGCGTTTCGGGTTTGGAACCATATGATTAAGGTAGGGATTGAGCCAAATCTTTACGCGTACACAACAATGGCTTCAGTTTTGACAGGACAGCAAAAGTTCAATCTTTTGGATACCCTTCTCAAGGAAATGGCTTCAAAGGGTATTGAACCGAGCGTTGTGACTTTCAACGCGGTTATAAGTGGTTGCGCGAGGAACGGGTTAAGTGGTGTGGCTTATGAGTGGTTTCATAGAATGAAAAGTGAGAATGTTGAGCCTAACGAGATAACTTACGAGATGTTGATTGAGGCTCTTGCAAATGATGCAAAGCCAAGGCTTGCTTATGAGTTACATGTGAAGGCTCAAAACGAAGGGCTTAAACTCTCTTCTAAGCCATATGATGCGGTTGTTAAATCAGCTGAGACTTATGGAGCCACCATTGATCTTAATCTTTTGGGTCCTCGACCAGACAAAAAGAATAGACCTTAG
- >AT3G46610.2 ATGCAAGCTTTAAGCATTTTGCCATTAAAGTCTGGTCTTTTAGTTGGATCAAGATTGGAATTTGAGTTGGATTGTTCTTGTTTTGTAGTTAGCCCTAAGACTACTAGAAAGAGACTTTGCTTTCTTGAACAGGCTTGCTTCGGTAGTAGTAGTAGTATCTCTAGCTTCATCTTCGTTTCGAGTAACAGGAAAGTTCTGTTTTTGTGTGAGCCAAAGAGAAGTTTGTTGGGATCATCGTTTGGGGTAGGATGGGCCACTGAGCAACGAGAGCTCGAGCTCGGGGAAGAAGAAGTTTCCACGGAAGATTTAAGTTCAGCAAATGGAGGAGAAAAGAACAATTTAAGAGTTGATGTTAGAGAATTAGCGTTTAGTTTACGAGCTGCTAAGACAGCTGATGATGTGGATGCTGTTCTCAAGGACAAGGGAGAGTTGCCTCTGCAAGTCTTTTGTGCTATGATAAAGGGTTTTGGCAAGGACAAGAGATTGAAGCCTGCGGTAGCTGTAGTAGATTGGCTTAAGAGGAAGAAGAGTGAATCAGGCGGTGTCATAGGTCCAAATCTTTTTATATATAACAGCCTTTTGGGTGCTATGAGAGGGTTTGGGGAAGCAGAGAAGATACTGAAAGATATGGAGGAAGAAGGGATTGTTCCAAACATTGTTACTTACAATACTTTGATGGTTATTTACATGGAGGAAGGTGAGTTTCTCAAGGCTCTTGGGATTCTTGATTTAACCAAGGAAAAGGGTTTTGAGCCTAACCCGATTACATATTCAACGGCTTTGCTTGTTTACAGAAGAATGGAAGACGGTATGGGAGCTTTAGAGTTCTTTGTTGAATTGAGAGAGAAATACGCAAAGAGGGAAATAGGGAATGATGTTGGTTACGATTGGGAATTTGAGTTTGTTAAGCTTGAGAACTTTATTGGTAGAATATGCTACCAAGTGATGAGGCGGTGGTTGGTGAAAGATGATAATTGGACTACTAGAGTGTTGAAGCTTTTGAATGCAATGGACAGTGCAGGGGTTAGACCGAGTAGGGAAGAGCACGAGAGGCTTATATGGGCATGTACTCGTGAAGAGCATTATATTGTTGGTAAAGAGTTGTATAAAAGAATCAGAGAGAGGTTTTCTGAGATAAGTCTGTCTGTTTGCAACCATTTGATTTGGCTGATGGGTAAGGCTAAGAAATGGTGGGCAGCGTTGGAGATCTACGAGGATCTTCTTGACGAAGGACCTGAACCTAACAATTTGTCTTATGAGTTAGTGGTCTCTCATTTCAATATCTTGCTGAGTGCAGCTAGCAAGAGAGGGATATGGAGATGGGGAGTTAGGTTACTTAACAAAATGGAAGATAAAGGATTGAAACCGCAGAGGAGACATTGGAACGCGGTTCTTGTAGCATGTTCAAAAGCCTCTGAGACCACAGCTGCGATCCAAATCTTTAAAGCAATGGTTGACAATGGTGAAAAGCCAACGGTCATCTCATACGGTGCACTACTCAGTGCTCTTGAGAAAGGGAAGCTATATGATGAGGCGTTTCGGGTTTGGAACCATATGATTAAGGTAGGGATTGAGCCAAATCTTTACGCGTACACAACAATGGCTTCAGTTTTGACAGGACAGCAAAAGTTCAATCTTTTGGATACCCTTCTCAAGGAAATGGCTTCAAAGGGTATTGAACCGAGCGTTGTGACTTTCAACGCGGTTATAAGTGGTTGCGCGAGGAACGGGTTAAGTGGTGTGGCTTATGAGTGGTTTCATAGAATGAAAAGTGAGAATGTTGAGCCTAACGAGATAACTTACGAGATGTTGATTGAGGCTCTTGCAAATGATGCAAAGCCAAGGCTTGCTTATGAGTTACATGTGAAGGCTCAAAACGAAGGGCTTAAACTCTCTTCTAAGCCATATGATGCGGTTGTTAAATCAGCTGAGACTTATGGAGCCACCATTGATCTTAATCTTTTGGGTCCTCGACCAGACAAAAAGAATAGACCTTAG
Protein Sequence
- >AT3G46610.1 MQALSILPLKSGLLVGSRLEFELDCSCFVVSPKTTRKRLCFLEQACFGSSSSISSFIFVSSNRKVLFLCEPKRSLLGSSFGVGWATEQRELELGEEEVSTEDLSSANGGEKNNLRVDVRELAFSLRAAKTADDVDAVLKDKGELPLQVFCAMIKGFGKDKRLKPAVAVVDWLKRKKSESGGVIGPNLFIYNSLLGAMRGFGEAEKILKDMEEEGIVPNIVTYNTLMVIYMEEGEFLKALGILDLTKEKGFEPNPITYSTALLVYRRMEDGMGALEFFVELREKYAKREIGNDVGYDWEFEFVKLENFIGRICYQVMRRWLVKDDNWTTRVLKLLNAMDSAGVRPSREEHERLIWACTREEHYIVGKELYKRIRERFSEISLSVCNHLIWLMGKAKKWWAALEIYEDLLDEGPEPNNLSYELVVSHFNILLSAASKRGIWRWGVRLLNKMEDKGLKPQRRHWNAVLVACSKASETTAAIQIFKAMVDNGEKPTVISYGALLSALEKGKLYDEAFRVWNHMIKVGIEPNLYAYTTMASVLTGQQKFNLLDTLLKEMASKGIEPSVVTFNAVISGCARNGLSGVAYEWFHRMKSENVEPNEITYEMLIEALANDAKPRLAYELHVKAQNEGLKLSSKPYDAVVKSAETYGATIDLNLLGPRPDKKNRP
- >AT3G46610.2 MQALSILPLKSGLLVGSRLEFELDCSCFVVSPKTTRKRLCFLEQACFGSSSSISSFIFVSSNRKVLFLCEPKRSLLGSSFGVGWATEQRELELGEEEVSTEDLSSANGGEKNNLRVDVRELAFSLRAAKTADDVDAVLKDKGELPLQVFCAMIKGFGKDKRLKPAVAVVDWLKRKKSESGGVIGPNLFIYNSLLGAMRGFGEAEKILKDMEEEGIVPNIVTYNTLMVIYMEEGEFLKALGILDLTKEKGFEPNPITYSTALLVYRRMEDGMGALEFFVELREKYAKREIGNDVGYDWEFEFVKLENFIGRICYQVMRRWLVKDDNWTTRVLKLLNAMDSAGVRPSREEHERLIWACTREEHYIVGKELYKRIRERFSEISLSVCNHLIWLMGKAKKWWAALEIYEDLLDEGPEPNNLSYELVVSHFNILLSAASKRGIWRWGVRLLNKMEDKGLKPQRRHWNAVLVACSKASETTAAIQIFKAMVDNGEKPTVISYGALLSALEKGKLYDEAFRVWNHMIKVGIEPNLYAYTTMASVLTGQQKFNLLDTLLKEMASKGIEPSVVTFNAVISGCARNGLSGVAYEWFHRMKSENVEPNEITYEMLIEALANDAKPRLAYELHVKAQNEGLKLSSKPYDAVVKSAETYGATIDLNLLGPRPDKKNRP