Gene Details:
- Gene ID: AT3G47720
- Gene Symbol: SRO4
- Gene Name: similar to RCD one 4
- Description: similar to RCD one 4;(source:Araport11)
- TAIR Accession: locus:2100357
- Genome: Araport11_genome_release
- Species: Arabidopsis thaliana
Transcripts:
Gene Ontology:
- GO:0005634 — located in — nucleus
- GO:0071456 — acts upstream of or within — cellular response to hypoxia
- GO:0003950 — enables — NAD+ ADP-ribosyltransferase activity
Germplasm Phenotype:
- SALK_002924C — Seedlings screened in bulk via high throughput methods for responses to various stressors. Results are in comparison to Col-0.heat:no change,cold:decreased,oxidative stress:decreased,osmotic stress:no change,salt stress:decreased,ABA:no change,hypoxia:no change.
Literature:
- Arabidopsis RADICAL-INDUCED CELL DEATH1 belongs to the WWE protein-protein interaction domain protein family and modulates abscisic acid, ethylene, and methyl jasmonate responses. DOI: 10.1105/tpc.021832 ; PMID: 15208394
- Functional compensation of primary and secondary metabolites by duplicate genes in Arabidopsis thaliana. DOI: 10.1093/molbev/msq204 ; PMID: 20736450
- Integrative Analysis from the Epigenome to Translatome Uncovers Patterns of Dominant Nuclear Regulation during Transient Stress. DOI: 10.1105/tpc.19.00463 ; PMID: 31519798
Sequence:
cDNA Sequence
- >AT3G47720.1 GTATTTTTAACTATTCATATATATATGTTTAGTCTCTCTGCAGTTTGAATTCAAACATTTGTGCTCTCTCATCTCAAAAACTACACTAAAGCTATAAATCATCAATCATCTAAAATCTTCAAAAAGCAATGGATTATTCAAAAACCGAAGAAACACCGATAAACGAAGAACAAGGGTCAACAAATTCATCTGAAAGCAGAAGCAATGAAGAGTTATTCTCTGATTGTGATCAACAACATTCTTCCATAGCTAACGAGTTCGGACTAACGGAGTTGCCTAAAGACGATAAAGTTTACGAGCTTATCTACCGTCATTGCCAATCTAAGCTAACTTCTCACTTAAGCAATCAGTTTGAGATTGTATCAATTCTCAAGAACGGATTTCAAACACCATTAGGACAAGCTAAGCTTAAAGCCTTTCAAATATACGCTGAGTCTGTTGCAAAGAAAAGCGGCAGCTGCTGTGGAAACAAAGCTGCGGTGGCTGAAGCGGCGAGAGTGAAATACGGTTGTTGCGGTGTGGAGAAGGAAGAGTTAAAAGCGATTCTAATGTATGGATTTAGCAACAATGCCTTATGTCTCTCACCAGACAATGCTCCTCTTCAATGTATGATAGATCCTTCATCATCTTGTAACGAAGACGGGATTAGCTTCTTGCTGTTTTCAAGAATTATTATGGGAAAATCAGAGGTTGTGTGCTCGACATCACAATCGTATCCGAGTTCTATGGAGTTTGATTCAGGTGTAGACAGTTTGACATCTCCAAACAAGTATATTATTTGGAGCACACACATGAACACTCATGTTTTGCCTGAGTTTGTTGTTTGCATCAAAACTCCATCTATCTTGAAAAGAAAAAACCCGAAATCTCCTTGGATTTCGTTTCCGGTCTTAATCAACTCGATATCAAAGTTTCTAAATCAATCGCAAATCCGTCTCATTCATAAACACTATAAAGAACATCAAGATAGGAGAATCTCGCGGTGTGAGTTGATTCAACGCCTGAGAAGTATAACTGGAGATAGCTTATTGGTTCAAATCATCAAATCTGTTGGACAAAAGGTACATAAAGACACATGAATACAAACCATTTCTGGTTTTGTTTCTCATACATAACTTCCACAATGCTGGTTCTTCGATTATGTTTCTCCGATAAATGTACAGTCACAGCGTGGCTAAACGCATCGATATAAAGAGTAGTCGTTTATTAGCTACAATGTTGATTACACTAGAATTTGGATGTGTC
CDS Sequence
- >AT3G47720.1 ATGGATTATTCAAAAACCGAAGAAACACCGATAAACGAAGAACAAGGGTCAACAAATTCATCTGAAAGCAGAAGCAATGAAGAGTTATTCTCTGATTGTGATCAACAACATTCTTCCATAGCTAACGAGTTCGGACTAACGGAGTTGCCTAAAGACGATAAAGTTTACGAGCTTATCTACCGTCATTGCCAATCTAAGCTAACTTCTCACTTAAGCAATCAGTTTGAGATTGTATCAATTCTCAAGAACGGATTTCAAACACCATTAGGACAAGCTAAGCTTAAAGCCTTTCAAATATACGCTGAGTCTGTTGCAAAGAAAAGCGGCAGCTGCTGTGGAAACAAAGCTGCGGTGGCTGAAGCGGCGAGAGTGAAATACGGTTGTTGCGGTGTGGAGAAGGAAGAGTTAAAAGCGATTCTAATGTATGGATTTAGCAACAATGCCTTATGTCTCTCACCAGACAATGCTCCTCTTCAATGTATGATAGATCCTTCATCATCTTGTAACGAAGACGGGATTAGCTTCTTGCTGTTTTCAAGAATTATTATGGGAAAATCAGAGGTTGTGTGCTCGACATCACAATCGTATCCGAGTTCTATGGAGTTTGATTCAGGTGTAGACAGTTTGACATCTCCAAACAAGTATATTATTTGGAGCACACACATGAACACTCATGTTTTGCCTGAGTTTGTTGTTTGCATCAAAACTCCATCTATCTTGAAAAGAAAAAACCCGAAATCTCCTTGGATTTCGTTTCCGGTCTTAATCAACTCGATATCAAAGTTTCTAAATCAATCGCAAATCCGTCTCATTCATAAACACTATAAAGAACATCAAGATAGGAGAATCTCGCGGTGTGAGTTGATTCAACGCCTGAGAAGTATAACTGGAGATAGCTTATTGGTTCAAATCATCAAATCTGTTGGACAAAAGGTACATAAAGACACATGA
Protein Sequence
- >AT3G47720.1 MDYSKTEETPINEEQGSTNSSESRSNEELFSDCDQQHSSIANEFGLTELPKDDKVYELIYRHCQSKLTSHLSNQFEIVSILKNGFQTPLGQAKLKAFQIYAESVAKKSGSCCGNKAAVAEAARVKYGCCGVEKEELKAILMYGFSNNALCLSPDNAPLQCMIDPSSSCNEDGISFLLFSRIIMGKSEVVCSTSQSYPSSMEFDSGVDSLTSPNKYIIWSTHMNTHVLPEFVVCIKTPSILKRKNPKSPWISFPVLINSISKFLNQSQIRLIHKHYKEHQDRRISRCELIQRLRSITGDSLLVQIIKSVGQKVHKDT