Gene Details:

• Gene ID: AT4G17040
• Gene Symbol: CLPR4, HON5
• Gene Name: CLP protease R subunit 4, happy on norflurazon 5
• Description: CLP protease R subunit 4;(source:Araport11)
• TAIR Accession: locus:2130449
• Genome: Araport11_genome_release
• Species: Arabidopsis thaliana

Transcripts:

• AT4G17040.1

Plant Ontology Annotations:

• PO:0009005  — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)

Gene Ontology:

• GO:0009941  — located in — chloroplast envelope
• GO:0009570  — located in — chloroplast stroma
• GO:0009368  — part of — endopeptidase Clp complex
• GO:0004176  — enables — ATP-dependent peptidase activity
• GO:0004252  — enables — serine-type endopeptidase activity
• GO:0009532  — located in — plastid stroma
• GO:0009507  — located in — chloroplast
• GO:0000302  — acts upstream of or within — response to reactive oxygen species
• GO:0006515  — involved in — protein quality control for misfolded or incompletely synthesized proteins
• GO:0005829  — located in — cytosol
• GO:0010468  — acts upstream of or within — regulation of gene expression
• GO:0051117  — enables — ATPase binding
• GO:0009536  — located in — plastid

Function-related keywords:

• root

Literature:

• Identification of a 350-kDa ClpP protease complex with 10 different Clp isoforms in chloroplasts of Arabidopsis thaliana.   DOI:  10.1074/jbc.M010503200 ;  PMID:  11278690
• The gene complement for proteolysis in the cyanobacterium Synechocystis sp. PCC 6803 and Arabidopsis thaliana chloroplasts.   DOI:  10.1007/s00294-002-0309-8 ;  PMID:  12185496
• Inactivation of the chloroplast ATP synthase gamma subunit results in high non-photochemical fluorescence quenching and altered nuclear gene expression in Arabidopsis thaliana.   DOI:  10.1074/jbc.M308435200 ;  PMID:  14576160
• Clp protease complexes from photosynthetic and non-photosynthetic plastids and mitochondria of plants, their predicted three-dimensional structures, and functional implications.   DOI:  10.1074/jbc.M309212200 ;  PMID:  14593120
• Downregulation of ClpR2 leads to reduced accumulation of the ClpPRS protease complex and defects in chloroplast biogenesis in Arabidopsis.   DOI:  10.1105/tpc.106.042861 ;  PMID:  16766689
• Cross genome comparisons of serine proteases in Arabidopsis and rice.   DOI:  10.1186/1471-2164-7-200 ;  PMID:  16895613
• Structural and functional insights into the chloroplast ATP-dependent Clp protease in Arabidopsis.   DOI:  10.1105/tpc.106.044594 ;  PMID:  16980539
• Protease gene families in Populus and Arabidopsis.   DOI:  10.1186/1471-2229-6-30 ;  PMID:  17181860
• Genome-wide interacting effects of sucrose and herbicide-mediated stress in Arabidopsis thaliana: novel insights into atrazine toxicity and sucrose-induced tolerance.   DOI:  10.1186/1471-2164-8-450 ;  PMID:  18053238
• Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection.   DOI:  10.1104/pp.108.121038 ;  PMID:  18650403
• Subunits of the plastid ClpPR protease complex have differential contributions to embryogenesis, plastid biogenesis, and plant development in Arabidopsis.   DOI:  10.1105/tpc.108.063784 ;  PMID:  19525416
• Identification of nuclear genes encoding chloroplast-localized proteins required for embryo development in Arabidopsis.   DOI:  10.1104/pp.110.168120 ;  PMID:  21139083
• Subunit stoichiometry, evolution, and functional implications of an asymmetric plant plastid ClpP/R protease complex in Arabidopsis.   DOI:  10.1105/tpc.111.086454 ;  PMID:  21712416
• Modified Clp protease complex in the ClpP3 null mutant and consequences for chloroplast development and function in Arabidopsis.   DOI:  10.1104/pp.113.215699 ;  PMID:  23548781
• Proteomic evidence for genetic epistasis: ClpR4 mutations switch leaf variegation to virescence in Arabidopsis.   DOI:  10.1111/tpj.12344 ;  PMID:  24124904
• 2-Hydroxymelatonin, Rather Than Melatonin, Is Responsible for RBOH-Dependent Reactive Oxygen Species Production Leading to Premature Senescence in Plants.   DOI:  10.3390/antiox10111728 ;  PMID:  34829600
• Chloroplast and mitochondrial proteases in Arabidopsis. A proposed nomenclature.   DOI:  10.1104/pp.125.4.1912 ;  PMID:  11299370
• Identification of a 350-kDa ClpP protease complex with 10 different Clp isoforms in chloroplasts of Arabidopsis thaliana.   DOI:  10.1074/jbc.M010503200 ;  PMID:  11278690
• Proteomic study of the Arabidopsis thaliana chloroplastic envelope membrane utilizing alternatives to traditional two-dimensional electrophoresis.   DOI:  10.1021/pr034025j ;  PMID:  12938931
• Clp protease complexes from photosynthetic and non-photosynthetic plastids and mitochondria of plants, their predicted three-dimensional structures, and functional implications.   DOI:  10.1074/jbc.M309212200 ;  PMID:  14593120
• Sorting signals, N-terminal modifications and abundance of the chloroplast proteome.   DOI:  10.1371/journal.pone.0001994 ;  PMID:  18431481
• Quantitative proteomics of a chloroplast SRP54 sorting mutant and its genetic interactions with CLPC1 in Arabidopsis.   DOI:  10.1104/pp.108.124545 ;  PMID:  18633119
• The oligomeric stromal proteome of Arabidopsis thaliana chloroplasts.   DOI:  10.1074/mcp.M500180-MCP200 ;  PMID:  16207701
• Analysis of protein complexes in Arabidopsis leaves using size exclusion chromatography and label-free protein correlation profiling.   DOI:  10.1016/j.jprot.2017.06.004 ;  PMID:  28627464

Sequence: