Gene Details:

• Gene ID: AT4G18130
• Gene Symbol: PHYE
• Gene Name: phytochrome E
• Description: phytochrome E;(source:Araport11)
• TAIR Accession: locus:2005536
• Genome: Araport11_genome_release
• Species: Arabidopsis thaliana

Transcripts:

• AT4G18130.1

Plant Ontology Annotations:

• PO:0009005  — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)

Gene Ontology:

• GO:0009888  — acts upstream of or within — tissue development
• GO:0019538  — acts upstream of or within — protein metabolic process
• GO:0010228  — acts upstream of or within — vegetative to reproductive phase transition of meristem
• GO:0000155  — enables — phosphorelay sensor kinase activity
• GO:0009649  — acts upstream of or within — entrainment of circadian clock
• GO:0005515  — enables — protein binding
• GO:0004673  — enables — protein histidine kinase activity
• GO:0009585  — involved in — red, far-red light phototransduction
• GO:0042803  — enables — protein homodimerization activity
• GO:0010468  — acts upstream of or within — regulation of gene expression
• GO:0006355  — involved in — regulation of DNA-templated transcription
• GO:0009892  — acts upstream of or within — negative regulation of metabolic process
• GO:0005634  — is active in — nucleus
• GO:0005886  — located in — plasma membrane
• GO:0009584  — involved in — detection of visible light
• GO:0009314  — acts upstream of or within — response to radiation
• GO:0050793  — acts upstream of or within — regulation of developmental process

Function-related keywords:

• root

Literature:

• Arabidopsis phytochromes C and E have different spectral characteristics from those of phytochromes A and B.   DOI:  10.1016/s0014-5793(00)01301-6 ;  PMID:  10734217
• The phytochrome gene family in tomato and the rapid differential evolution of this family in angiosperms.   DOI:  10.1093/oxfordjournals.molbev.a026316 ;  PMID:  10723737
• Functional interaction of cryptochrome 1 and phytochrome D.   DOI:  10.1046/j.1365-313x.1999.t01-1-00599.x ;  PMID:  10571889
• Characterization of the gene encoding the apoprotein of phytochrome B2 in tomato, and identification of molecular lesions in two mutant alleles.   DOI:  10.1007/s004380051037 ;  PMID:  10485280
• The system of phytochromes: photobiophysics and photobiochemistry in vivo.   DOI:  NA ;  PMID:  10379648
• Phytochrome D acts in the shade-avoidance syndrome in Arabidopsis by controlling elongation growth and flowering time.   DOI:  10.1104/pp.119.3.909 ;  PMID:  10069829
• Phytochromes and photomorphogenesis in Arabidopsis.   DOI:  10.1098/rstb.1998.0300 ;  PMID:  9800208
• Phytochrome E influences internode elongation and flowering time in Arabidopsis.   DOI:  10.1105/tpc.10.9.1479 ;  PMID:  9724694
• Coordination of phytochrome levels in phyB mutants of Arabidopsis as revealed by apoprotein-specific monoclonal antibodies.   DOI:  10.1093/genetics/149.2.523 ;  PMID:  9611171
• Evidence that the phytochrome gene family in black cottonwood has one PHYA locus and two PHYB loci but lacks members of the PHYC/F and PHYE subfamilies.   DOI:  10.1093/oxfordjournals.molbev.a025912 ;  PMID:  9491613
• Differential patterns of expression of the Arabidopsis PHYB, PHYD, and PHYE phytochrome genes.   DOI:  10.1104/pp.115.3.959 ;  PMID:  9390432
• Computer analysis of phytochrome sequences and reevaluation of the phytochrome secondary structure by Fourier transform infrared spectroscopy.   DOI:  10.1016/s0167-4838(97)00050-2 ;  PMID:  9252112
• The phytochrome gene family in grasses (Poaceae): a phylogeny and evidence that grasses have a subset of the loci found in dicot angiosperms.   DOI:  10.1093/oxfordjournals.molbev.a025677 ;  PMID:  8865668
• The phytochrome gene family in tomato includes a novel subfamily.   DOI:  10.1007/BF00020458 ;  PMID:  8616214
• Impaired splicing of phytochrome B pre-mRNA in a novel phyB mutant of Arabidopsis.   DOI:  10.1007/BF00020886 ;  PMID:  7539307
• The phytochrome apoprotein family in Arabidopsis is encoded by five genes: the sequences and expression of PHYD and PHYE.   DOI:  10.1007/BF00043870 ;  PMID:  8049367
• Functional interaction of phytochrome B and cryptochrome 2.   DOI:  10.1038/35041583 ;  PMID:  11089975
• Circadian clock-regulated expression of phytochrome and cryptochrome genes in Arabidopsis.   DOI:  10.1104/pp.010467 ;  PMID:  11743105
• Molecular and phenotypic specificity of an antisense PHYB gene in Arabidopsis.   DOI:  10.1023/a:1010686805488 ;  PMID:  11437253
• shl, a New set of Arabidopsis mutants with exaggerated developmental responses to available red, far-red, and blue light.   DOI:  10.1104/pp.127.1.295 ;  PMID:  11553757
• Repression of light signaling by Arabidopsis SPA1 involves post-translational regulation of HFR1 protein accumulation.   DOI:  10.1111/j.1365-313X.2005.02433.x ;  PMID:  15960622
• phyA dominates in transduction of red-light signals to rapidly responding genes at the initiation of Arabidopsis seedling de-etiolation.   DOI:  10.1111/j.1365-313X.2006.02914.x ;  PMID:  17076805
• Phytochrome A is an irradiance-dependent red light sensor.   DOI:  10.1111/j.1365-313X.2007.03036.x ;  PMID:  17346261
• A new role for phytochromes in temperature-dependent germination.   DOI:  10.1111/j.1469-8137.2007.02044.x ;  PMID:  17504457
• Obligate heterodimerization of Arabidopsis phytochromes C and E and interaction with the PIF3 basic helix-loop-helix transcription factor.   DOI:  10.1105/tpc.108.065227 ;  PMID:  19286967
• Photoactivated phytochrome induces rapid PIF3 phosphorylation prior to proteasome-mediated degradation.   DOI:  10.1016/j.molcel.2006.06.011 ;  PMID:  16885032
• Phytochromes differentially regulate seed germination responses to light quality and temperature cues during seed maturation.   DOI:  10.1111/j.1365-3040.2009.01998.x ;  PMID:  19453482
• Arabidopsis PHYTOCHROME INTERACTING FACTOR proteins promote phytochrome B polyubiquitination by COP1 E3 ligase in the nucleus.   DOI:  10.1105/tpc.109.072520 ;  PMID:  20605855
• PFT1, the MED25 subunit of the plant Mediator complex, promotes flowering through CONSTANS dependent and independent mechanisms in Arabidopsis.   DOI:  10.1111/j.1365-313X.2011.04815.x ;  PMID:  21985558
• Phytochrome signaling mechanisms.   DOI:  10.1199/tab.0148 ;  PMID:  22303272
• Comparative functional analysis of full-length and N-terminal fragments of phytochrome C, D and E in red light-induced signaling.   DOI:  10.1111/nph.12364 ;  PMID:  23772959
• Functional diversity of phytochrome family in the control of light and gibberellin-mediated germination in Arabidopsis.   DOI:  10.1111/pce.12286 ;  PMID:  24471455
• FHY3 and FAR1 Act Downstream of Light Stable Phytochromes.   DOI:  10.3389/fpls.2016.00175 ;  PMID:  26941752
• Bottom-up Assembly of the Phytochrome Network.   DOI:  10.1371/journal.pgen.1006413 ;  PMID:  27820825
• Differential phosphorylation of the N-terminal extension regulates phytochrome B signaling.   DOI:  10.1111/nph.16243 ;  PMID:  31596952
• Differing biophysical properties underpin the unique signaling potentials within the plant phytochrome photoreceptor families.   DOI:  10.1073/pnas.2105649118 ;  PMID:  34039713
• Phytochrome-Dependent Regulation of ZFP6 and ZFPH Impacts Photomorphogenesis in Arabidopsis thaliana.   DOI:  10.3389/fpls.2022.846262 ;  PMID:  35720591
• Functional Mapping of Genes Modulating Plant Shade Avoidance Using Leaf Traits.   DOI:  10.3390/plants12030608 ;  PMID:  36771692

Sequence: