Gene Details:

• Gene ID: AT4G26600
• Gene Symbol: AtTRM4d, NOP2B, TRM4d
• Gene Name: tRNA methyltransferase 4d
• Description: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
• TAIR Accession: locus:2133832
• Genome: Araport11_genome_release
• Species: Arabidopsis thaliana

Transcripts:

• AT4G26600.1     AT4G26600.5     AT4G26600.3     AT4G26600.2     AT4G26600.7     AT4G26600.6     AT4G26600.4     AT4G26600.8

Plant Ontology Annotations:

• PO:0000037  — shoot axis apex — ápice del epiblasto (epiblastema) (Spanish, exact), シュート頂、茎頂 (Japanese, exact)
• PO:0009006  — shoot system — sistema de epiblasto (epiblastema) (Spanish, exact), シュート系、苗条系 (Japanese, exact), Poaceae crown (related), shoot (related), thalli (related), thallus (related), tree crown (narrow)
• PO:0009009  — plant embryo — embrión (Spanish, exact), 植物胚 (Japanese, exact), germ (related), embryo (broad)
• PO:0009025  — vascular leaf — foliage leaf (exact), hoja vascular (Spanish, exact), leaf, vascular (exact), vascular leaves (exact, plural), 維管束のある葉, または維管束植物の葉 (Japanese, exact), crozier (related), macrophyll (related), megaphyll (related), ascidia (narrow), ascidium (narrow), fiddlehead (narrow), frond (narrow), needle-like leaf (narrow), pitcher (narrow), pitcher blade (narrow), pitcher-blade (narrow), scale-like leaf (narrow), sterile frond (narrow), trophophyll (narrow)
• PO:0009029  — stamen — estambre (Spanish, exact), 雄蕊 (Japanese, exact), Poaceae stamen (narrow), Zea stamen (narrow)
• PO:0009031  — sepal — sépalo (Spanish, exact), がく片 (Japanese, exact)
• PO:0009046  — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
• PO:0009052  — inflorescence flower pedicel — 小花柄 (Japanese, related), pedicelo (Spanish, broad)
• PO:0020038  — petiole — pecíolo (Spanish, exact), 葉柄 (Japanese, exact)
• PO:0020100  — hypocotyl — hipocótile (Spanish, exact), 胚軸 (Japanese, exact)
• PO:0020137  — leaf apex — ápice de la hoja (Spanish, exact), 葉先 (Japanese, exact), leaf lamina apex (narrow), phyllid apex (narrow)
• PO:0025022  — collective leaf structure — estructura colectiva de hoja (Spanish, exact), leaf series (exact), 葉が集まった構造 (Japanese, exact), leaf whorl (narrow), rosette (narrow), cycle (broad), verticil (broad)

Gene Ontology:

• GO:0000470  — involved in — maturation of LSU-rRNA
• GO:0006396  — involved in — RNA processing
• GO:0005634  — located in — nucleus
• GO:0048316  — acts upstream of or within — seed development
• GO:0016070  — acts upstream of or within — RNA metabolic process
• GO:0009383  — enables — rRNA (cytosine-C5-)-methyltransferase activity
• GO:0001510  — involved in — RNA methylation
• GO:0070475  — involved in — rRNA base methylation
• GO:0005730  — located in — nucleolus
• GO:0005730  — is active in — nucleolus
• GO:0008757  — enables — S-adenosylmethionine-dependent methyltransferase activity

Function-related keywords:

• shoot axis apex ,  shoot system ,  plant embryo ,  vascular leaf ,  stamen ,  sepal ,  flower ,  inflorescence flower pedicel ,  petiole ,  hypocotyl ,  leaf apex ,  collective leaf structure

Literature:

• Inactivation of the chloroplast ATP synthase gamma subunit results in high non-photochemical fluorescence quenching and altered nuclear gene expression in Arabidopsis thaliana.   DOI:  10.1074/jbc.M308435200 ;  PMID:  14576160
• Arabidopsis response regulator, ARR22, ectopic expression of which results in phenotypes similar to the wol cytokinin-receptor mutant.   DOI:  10.1093/pcp/pch128 ;  PMID:  15356332
• Combinatorial microarray analysis revealing arabidopsis genes implicated in cytokinin responses through the His->Asp Phosphorelay circuitry.   DOI:  10.1093/pcp/pci033 ;  PMID:  15695462
• Temporal responses of transcripts, enzyme activities and metabolites after adding sucrose to carbon-deprived Arabidopsis seedlings.   DOI:  10.1111/j.1365-313X.2006.02979.x ;  PMID:  17217462
• Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection.   DOI:  10.1104/pp.108.121038 ;  PMID:  18650403
• Conservation of tRNA and rRNA 5-methylcytosine in the kingdom Plantae.   DOI:  10.1186/s12870-015-0580-8 ;  PMID:  26268215
• Identification of tRNA nucleoside modification genes critical for stress response and development in rice and Arabidopsis.   DOI:  10.1186/s12870-017-1206-0 ;  PMID:  29268705
• Proteomic analysis of the Arabidopsis nucleolus suggests novel nucleolar functions.   DOI:  10.1091/mbc.e04-09-0791 ;  PMID:  15496452

Sequence: