Gene Details:

  • Gene ID: AT4G26750
  • Gene Symbol: EXT-like, LIP5
  • Gene Name: extensin-like, homolog of mammalian LYST-INTERACTING PROTEIN5
  • Description: hydroxyproline-rich glycoprotein family protein;(source:Araport11)
  • TAIR Accession: locus:2116437
  • Genome: Araport11_genome_release
  • Species: Arabidopsis thaliana

Transcripts:

Plant Ontology Annotations:

  • PO:0000037  — shoot axis apex — ápice del epiblasto (epiblastema) (Spanish, exact), シュート頂、茎頂 (Japanese, exact)
  • PO:0008019  — leaf lamina base — base de la lámina de la hoja (Spanish, exact), 葉身基部 (Japanese, exact)
  • PO:0009006  — shoot system — sistema de epiblasto (epiblastema) (Spanish, exact), シュート系、苗条系 (Japanese, exact), Poaceae crown (related), shoot (related), thalli (related), thallus (related), tree crown (narrow)
  • PO:0009009  — plant embryo — embrión (Spanish, exact), 植物胚 (Japanese, exact), germ (related), embryo (broad)
  • PO:0009025  — vascular leaf — foliage leaf (exact), hoja vascular (Spanish, exact), leaf, vascular (exact), vascular leaves (exact, plural), 維管束のある葉, または維管束植物の葉 (Japanese, exact), crozier (related), macrophyll (related), megaphyll (related), ascidia (narrow), ascidium (narrow), fiddlehead (narrow), frond (narrow), needle-like leaf (narrow), pitcher (narrow), pitcher blade (narrow), pitcher-blade (narrow), scale-like leaf (narrow), sterile frond (narrow), trophophyll (narrow)
  • PO:0009029  — stamen — estambre (Spanish, exact), 雄蕊 (Japanese, exact), Poaceae stamen (narrow), Zea stamen (narrow)
  • PO:0009031  — sepal — sépalo (Spanish, exact), がく片 (Japanese, exact)
  • PO:0009046  — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
  • PO:0009052  — inflorescence flower pedicel — 小花柄 (Japanese, related), pedicelo (Spanish, broad)
  • PO:0020030  — cotyledon — cotiledón (Spanish, exact), seed leaf (exact), 子葉 (Japanese, exact)
  • PO:0020038  — petiole — pecíolo (Spanish, exact), 葉柄 (Japanese, exact)
  • PO:0020100  — hypocotyl — hipocótile (Spanish, exact), 胚軸 (Japanese, exact)
  • PO:0020137  — leaf apex — ápice de la hoja (Spanish, exact), 葉先 (Japanese, exact), leaf lamina apex (narrow), phyllid apex (narrow)
  • PO:0025022  — collective leaf structure — estructura colectiva de hoja (Spanish, exact), leaf series (exact), 葉が集まった構造 (Japanese, exact), leaf whorl (narrow), rosette (narrow), cycle (broad), verticil (broad)
  • PO:0025281  — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)

Gene Ontology:

  • GO:0005515  — enables — protein binding
  • GO:1900426  — acts upstream of or within — positive regulation of defense response to bacterium
  • GO:0009555  — acts upstream of or within — pollen development
  • GO:0005771  — located in — multivesicular body
  • GO:0042803  — enables — protein homodimerization activity
  • GO:0080001  — acts upstream of or within — mucilage extrusion from seed coat
  • GO:0005634  — located in — nucleus
  • GO:0016192  — acts upstream of or within — vesicle-mediated transport
  • GO:0098542  — involved in — defense response to other organism
  • GO:0005768  — colocalizes with — endosome
  • GO:1903335  — acts upstream of or within — regulation of vacuolar transport
  • GO:0032511  — involved in — late endosome to vacuole transport via multivesicular body sorting pathway
  • GO:0016197  — acts upstream of or within — endosomal transport
  • GO:0005737  — located in — cytoplasm
  • GO:0005771  — is active in — multivesicular body

Germplasm Phenotype:

  • spi-4/lip5-1  — Significant reduction in seed coat mucilage. On a subcellular level there are defects in vacuolar trafficking.

Literature:

Sequence:

cDNA Sequence
  • >AT4G26750.1 GGGATTTTAGAGGTCCTTTCTGCGACGTCGTTTCTAGTTTGCAATCAGAAGCGCGTTAAATACAGGAAAATTTCTTGAGCTGTTTTGTCTTAACAAATCAATCGGAGAAAAAGCTACGGAGCTCGAGAGAAGAGAGAATCTATGTCGAACCCAAACGAACCAGCCAGGGCTCTTCTGCCTTACCTGCAACGTGCCGATGAGCTGCAGAAGCATGAACCACTTGTTGCTTATTACTGTCGGCTATATGCAATGGAACGAGGATTGAAGATTCCGCAGAGCGAGAGAACTAAGACCACCAATTCGATTCTCATGTCTCTCATTAATCAACTCGAAAAGGATAAAAAATCATTGACTCTGTCCCCAGATGACAATATGCATGTGGAGGGGTTTGCACTTAGTGTCTTTGCTAAGGCAGACAAGCAGGATCGTGCAGGAAGAGCAGACTTGGGCACTGCCAAAACTTTTTATGCTGCGAGCATCTTCTTTGAAATTCTGAGCCAGTTTGGTCCCGTACCTCCTGATATAGAGCAGAAACACAAGTATGCTGCTTGGAAGGCTGCTGACATAAGGAAAGCCATTAAAGAAGGAAGGAAGCCCACTCCAGGTGATCCTGTGGATGATGATACTGATTTATCCATCCCATCAAGCGGTCCTAGTGGCTCCTATGATCACAGTGCAAGTGATACCAACACAACAAGTCATCATAGAACAGAGCTTGATCCACCCCATGACTCGAATGATGACTCCAGCCACCATCAATTCCCTGAAGTGCCACAACACCCTCTACCTCCCAGGTTTTATGACAATCCGACCAACGATTATCCCGCAGATGTCCCACCTCCACCACCGTCTTCTTACCCTTCCAACGATCATCTTCCCCCTCCCACAGGACCATCAGACTCCCCTTACCCGCATCCTTACAGTCATCAACCATACCACCAAGACCCGCCAAAACACATGCCGCCACCGCAAAACTACTCATCTCATGAGCCTTCTCCAAATTCTCTCCCTAATTTCCAATCTTATCCTAGCTTTAGTGAGAGCAGCCTCCCATCCACTTCTCCCCACTACCCTTCTCACTACCAAAACCCAGAACCTTACTATTCTTCTCCGCACTCTGCACCTGCTCCTTCTTCCACAAGCTTCTCCTCTGCTCCTCCTCCTCCACCTTACTCATCAAACGGGCGTATCAATATTGCTCCCGTGCTAGATCCTGCACCGAGTTCAGCTCAGAAGTACCATTACGATAGCAGCTACCAGCCAGGGCCTGAGAAGGTTGCAGAGGCACTCAAGGCTGCTAGATTCGCTGTGGGAGCTTTGGCTTTTGATGAAGTCTCGACTGCTGTAGAACATCTCAAGAAGTCACTTGAGTTGCTAACAAATCCATCGGCCGGTGCCGGTCACTGAATTTTATATCTAATCTATGACACTTGGGGTTGATGTTAGTGCGTGTGTGTGTTCTCAACATTTGTGGGTTTGTTTATTAACTTTTCAGGCTCAGACTTCGTTTACAAAGAAAATTTGTGTGAATTATTCTTATTATCATAAAATTTTCCTTGCAACTTCGTGTACATTCATACATACATAGGCAATGGAGTTCCTCTTCAGTCTTCACGTAAAGAGCGAGTGTGGGACACG
CDS Sequence
Protein Sequence