Gene Details:
- Gene ID: AT4G30330
- Gene Symbol: PCP-like, SME2
- Gene Name: PORCUPINE LIKE, Sm protein E2
- Description: Small nuclear ribonucleoprotein family protein;(source:Araport11)
- TAIR Accession:
- Genome: Araport11_genome_release
- Species: Arabidopsis thaliana
Transcripts:
Plant Ontology Annotations:
- PO:0000037 — shoot axis apex — ápice del epiblasto (epiblastema) (Spanish, exact), シュート頂、茎頂 (Japanese, exact)
- PO:0008019 — leaf lamina base — base de la lámina de la hoja (Spanish, exact), 葉身基部 (Japanese, exact)
- PO:0009006 — shoot system — sistema de epiblasto (epiblastema) (Spanish, exact), シュート系、苗条系 (Japanese, exact), Poaceae crown (related), shoot (related), thalli (related), thallus (related), tree crown (narrow)
- PO:0009009 — plant embryo — embrión (Spanish, exact), 植物胚 (Japanese, exact), germ (related), embryo (broad)
- PO:0009025 — vascular leaf — foliage leaf (exact), hoja vascular (Spanish, exact), leaf, vascular (exact), vascular leaves (exact, plural), 維管束のある葉, または維管束植物の葉 (Japanese, exact), crozier (related), macrophyll (related), megaphyll (related), ascidia (narrow), ascidium (narrow), fiddlehead (narrow), frond (narrow), needle-like leaf (narrow), pitcher (narrow), pitcher blade (narrow), pitcher-blade (narrow), scale-like leaf (narrow), sterile frond (narrow), trophophyll (narrow)
- PO:0009029 — stamen — estambre (Spanish, exact), 雄蕊 (Japanese, exact), Poaceae stamen (narrow), Zea stamen (narrow)
- PO:0009031 — sepal — sépalo (Spanish, exact), がく片 (Japanese, exact)
- PO:0009046 — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
- PO:0009052 — inflorescence flower pedicel — 小花柄 (Japanese, related), pedicelo (Spanish, broad)
- PO:0020030 — cotyledon — cotiledón (Spanish, exact), seed leaf (exact), 子葉 (Japanese, exact)
- PO:0020038 — petiole — pecíolo (Spanish, exact), 葉柄 (Japanese, exact)
- PO:0020100 — hypocotyl — hipocótile (Spanish, exact), 胚軸 (Japanese, exact)
- PO:0020137 — leaf apex — ápice de la hoja (Spanish, exact), 葉先 (Japanese, exact), leaf lamina apex (narrow), phyllid apex (narrow)
- PO:0025022 — collective leaf structure — estructura colectiva de hoja (Spanish, exact), leaf series (exact), 葉が集まった構造 (Japanese, exact), leaf whorl (narrow), rosette (narrow), cycle (broad), verticil (broad)
- PO:0025281 — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
Function-related keywords:
- shoot axis apex , leaf lamina base , shoot system , plant embryo , vascular leaf , stamen , sepal , flower , inflorescence flower pedicel , cotyledon , petiole , hypocotyl , leaf apex , collective leaf structure , pollen
Literature:
- DNA array analyses of Arabidopsis thaliana lacking a vacuolar Na+/H+ antiporter: impact of AtNHX1 on gene expression. DOI: 10.1111/j.1365-313X.2004.02253.x ; PMID: 15546358
- The Arabidopsis thaliana transcriptome in response to Agrobacterium tumefaciens. DOI: 10.1094/MPMI-19-0665 ; PMID: 16776300
- Functional compensation of primary and secondary metabolites by duplicate genes in Arabidopsis thaliana. DOI: 10.1093/molbev/msq204 ; PMID: 20736450
- Genome-wide identification and evolutionary analysis of Arabidopsis sm genes family. DOI: 10.1080/07391102.2011.10508593 ; PMID: 21142222
- PORCUPINE regulates development in response to temperature through alternative splicing. DOI: 10.1038/s41477-018-0176-z ; PMID: 29988152
- Arabidopsis SME1 Regulates Plant Development and Response to Abiotic Stress by Determining Spliceosome Activity Specificity. DOI: 10.1105/tpc.18.00689 ; PMID: 30696706
- Modulation of plant development and chilling stress responses by alternative splicing events under control of the spliceosome protein SmEb in Arabidopsis. DOI: 10.1111/pce.14386 ; PMID: 35770732
- Analysis of the Arabidopsis cytosolic proteome highlights subcellular partitioning of central plant metabolism. DOI: 10.1021/pr1009433 ; PMID: 21166475
Sequence:
cDNA Sequence
- >AT4G30330.1 CTAAAAAGTTAAATAATGTTTTTGTGGGGAGAAAAATGAAAATAGCAGATTTTCGAGGATGGGAAGAGTAAAACATATATTTGAGAAGTCGAAAAGTGTGAAATATTTGTTCTGTCTCGCGAGGAAGAGAGAAAAATCGAATTAGAAATTGCAAGTTTTAGGGTTTTAGAAAATCTATCTTCTTCACTGAGTTTTCCAGCTCCGAAGAACACTTGCAACTTCAGGCAATTATGGCGAGCACCAAAGTTCAGAGGATTATGACTCAACCCATTAATCTGATTTTCAGATTTCTCCAAAGTAAAGCTCGGATTCAGATTTGGCTTTTTGAGCAGAAAGATTTGAGGATTGAGGGACGAATTACTGGTTTTGATGAGTACATGAATTTGGTGCTGGATGAGGCAGAGGAAGTGAGCATCAAGAAGAAAACCAGAAAACCACTTGGTCGGATTTTGCTTAAAGGAGACAACATAACTCTCATGATGAACGCGGGCAAGTGATGTCTGTTGCAGTGCAAGGAATGATCTAATTATATGGAATGGTTTAAGAGTTCCTGCTCCCCTCTCGTTTCTCTGTTGGGTAAAAGTTGTCTTTTTGCTGTTTACTTCTGTCAACTTGAGAAATTTCAACTTTGCAAACAAAATTATGAGAAAATAGTTTCATCAAAAAAGACCTCAAATCCAAGAAGATTGTAGAAATGTCTAATATTTGTCTATTTGGTTAGA
CDS Sequence
Protein Sequence