Gene Details:
- Gene ID: AT4G31850
- Gene Symbol: PGR3
- Gene Name: proton gradient regulation 3
- Description: proton gradient regulation 3;(source:Araport11)
- TAIR Accession: locus:2116772
- Genome: Araport11_genome_release
- Species: Arabidopsis thaliana
Transcripts:
Plant Ontology Annotations:
- PO:0000037 — shoot axis apex — ápice del epiblasto (epiblastema) (Spanish, exact), シュート頂、茎頂 (Japanese, exact)
- PO:0008019 — leaf lamina base — base de la lámina de la hoja (Spanish, exact), 葉身基部 (Japanese, exact)
- PO:0009006 — shoot system — sistema de epiblasto (epiblastema) (Spanish, exact), シュート系、苗条系 (Japanese, exact), Poaceae crown (related), shoot (related), thalli (related), thallus (related), tree crown (narrow)
- PO:0009009 — plant embryo — embrión (Spanish, exact), 植物胚 (Japanese, exact), germ (related), embryo (broad)
- PO:0009025 — vascular leaf — foliage leaf (exact), hoja vascular (Spanish, exact), leaf, vascular (exact), vascular leaves (exact, plural), 維管束のある葉, または維管束植物の葉 (Japanese, exact), crozier (related), macrophyll (related), megaphyll (related), ascidia (narrow), ascidium (narrow), fiddlehead (narrow), frond (narrow), needle-like leaf (narrow), pitcher (narrow), pitcher blade (narrow), pitcher-blade (narrow), scale-like leaf (narrow), sterile frond (narrow), trophophyll (narrow)
- PO:0009029 — stamen — estambre (Spanish, exact), 雄蕊 (Japanese, exact), Poaceae stamen (narrow), Zea stamen (narrow)
- PO:0009031 — sepal — sépalo (Spanish, exact), がく片 (Japanese, exact)
- PO:0009046 — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
- PO:0009052 — inflorescence flower pedicel — 小花柄 (Japanese, related), pedicelo (Spanish, broad)
- PO:0020030 — cotyledon — cotiledón (Spanish, exact), seed leaf (exact), 子葉 (Japanese, exact)
- PO:0020038 — petiole — pecíolo (Spanish, exact), 葉柄 (Japanese, exact)
- PO:0020100 — hypocotyl — hipocótile (Spanish, exact), 胚軸 (Japanese, exact)
- PO:0020137 — leaf apex — ápice de la hoja (Spanish, exact), 葉先 (Japanese, exact), leaf lamina apex (narrow), phyllid apex (narrow)
- PO:0025022 — collective leaf structure — estructura colectiva de hoja (Spanish, exact), leaf series (exact), 葉が集まった構造 (Japanese, exact), leaf whorl (narrow), rosette (narrow), cycle (broad), verticil (broad)
- PO:0025281 — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
Gene Ontology:
- GO:0043489 — acts upstream of or within — RNA stabilization
- GO:0032544 — acts upstream of or within — plastid translation
- GO:0003729 — enables — mRNA binding
Germplasm Phenotype:
- pgr3-4 — Slightly chlorophyll deficient, grows more slowly than the wild-type under moderate light conditions.
Function-related keywords:
- shoot axis apex , leaf lamina base , shoot system , plant embryo , vascular leaf , stamen , sepal , flower , inflorescence flower pedicel , cotyledon , petiole , hypocotyl , leaf apex , collective leaf structure , pollen
Literature:
- The FHY3 and FAR1 genes encode transposase-related proteins involved in regulation of gene expression by the phytochrome A-signaling pathway. DOI: 10.1046/j.1365-313x.2003.01741.x ; PMID: 12753585
- Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins reveals their essential role in organelle biogenesis. DOI: 10.1105/tpc.104.022236 ; PMID: 15269332
- Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection. DOI: 10.1104/pp.108.121038 ; PMID: 18650403
- Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis. DOI: 10.1104/pp.108.126375 ; PMID: 18775970
- Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method. DOI: 10.3390/biom10040661 ; PMID: 32344669
- The Arabidopsis NOT4A E3 ligase promotes PGR3 expression and regulates chloroplast translation. DOI: 10.1038/s41467-020-20506-4 ; PMID: 33431870
Sequence:
cDNA Sequence
- >AT4G31850.1 GTTTTTTATTATTCTGCTTCGAAAATTCTTTCATCAAAAATCTCCGGTTCACCGAAATCGACTCCCTCGCGCTCTTTTCAGCCGGTGAACGGAGACGAATCAAAATGCTCATAGCTATTCAGCACGTGTTTGTGTTTTGTTAGTTATATCTGCGCCACTTGAAATGTGATGAATCATCATCGTTAATCTCTGTTTTCGTTTCAATTTTTGCCGGAGAATTGAATTGTTTTGCTTGCTTGGCTTATCTCTAGAATGGTCGCGTTACTCTGCTCTGCGAGTTTGTGTGGTGATATATCAGTTGGTGATGCTTGTCTTGTTAGTAACATCAAAGCAAAATGTCGCGATAATTTGGTTACTGGAGGATTAAAGTTCCACGCTTTGAAGATTGGGTCTCGGAAGAAACACTGGAGAAGGAAGAGTATGAGATGTAGTGTAGTCTCCATGAAAAGTTCTGACTTTTCGGGTTCTATGATAAGAAAGAGCTCAAAACCTGATTTGTCATCGAGTGAAGAAGTAACGAGGGGTTTAAAGTCGTTTCCTGATACTGATTCTTCATTTTCGTATTTCAAATCAGTGGCTGGGAATTTGAATTTAGTTCACACTACTGAGACTTGTAACTACATGCTTGAAGCTTTGAGGGTTGATGGTAAACTTGAGGAAATGGCTTATGTGTTTGATTTGATGCAGAAAAGAATCATAAAGAGGGATACTAATACTTACTTGACTATCTTCAAGAGTCTTTCTGTGAAAGGTGGATTGAAGCAAGCACCTTATGCACTTCGGAAGATGAGAGAATTTGGTTTTGTGTTGAATGCATATTCATACAATGGGTTGATTCATCTTCTGCTTAAGTCTAGGTTTTGCACAGAGGCAATGGAGGTTTATAGAAGAATGATCTTGGAAGGTTTTAGACCTAGTTTGCAGACTTACTCTTCACTTATGGTAGGTTTGGGGAAAAGAAGGGATATTGATTCTGTGATGGGTTTACTTAAAGAGATGGAGACTTTGGGGTTAAAGCCGAATGTTTACACCTTTACGATATGTATTCGGGTGCTTGGTAGGGCAGGGAAGATTAATGAAGCATATGAAATACTGAAGCGGATGGATGATGAAGGATGTGGACCTGATGTAGTTACTTACACTGTTCTTATTGATGCTCTGTGTACTGCTAGGAAGCTCGATTGTGCGAAGGAGGTTTTCGAAAAGATGAAAACAGGAAGACACAAACCAGATCGTGTAACTTACATTACTTTGCTGGACAGGTTTAGTGATAACAGAGATCTGGATTCAGTGAAGCAGTTTTGGAGTGAAATGGAGAAGGATGGTCATGTACCTGATGTTGTAACCTTTACCATTCTCGTGGATGCTCTGTGCAAAGCTGGGAATTTTGGTGAAGCATTTGATACATTGGATGTGATGAGGGACCAAGGTATCTTACCGAACCTTCATACATATAACACATTGATTTGCGGTCTTCTAAGAGTCCACCGGTTGGATGATGCACTTGAACTGTTTGGTAATATGGAGTCTCTGGGCGTGAAGCCCACTGCCTATACGTACATAGTTTTCATTGATTACTATGGAAAGTCTGGAGATTCCGTCAGTGCTCTTGAGACTTTTGAGAAGATGAAAACCAAAGGAATAGCTCCGAACATTGTAGCCTGTAATGCGTCTCTCTACAGTCTAGCTAAAGCGGGAAGGGACCGAGAAGCGAAACAAATCTTCTATGGCTTGAAAGACATAGGACTGGTCCCTGATTCAGTAACTTATAACATGATGATGAAGTGCTACAGTAAGGTTGGGGAGATAGATGAAGCCATCAAGCTGCTTTCTGAGATGATGGAGAATGGTTGTGAACCTGATGTTATTGTTGTTAATTCTTTGATCAATACACTTTACAAAGCTGATAGAGTAGATGAGGCGTGGAAGATGTTTATGAGAATGAAGGAAATGAAGCTGAAGCCTACAGTTGTGACTTACAACACATTGCTCGCAGGTCTAGGCAAAAATGGAAAAATTCAAGAGGCCATTGAGTTGTTCGAGGGGATGGTGCAGAAAGGTTGTCCACCTAACACAATTACTTTCAACACTCTCTTTGATTGCCTTTGCAAAAATGACGAGGTGACTCTAGCCTTGAAGATGTTGTTCAAGATGATGGACATGGGTTGTGTCCCAGATGTTTTTACTTACAATACGATTATCTTTGGTTTGGTGAAGAATGGTCAAGTCAAAGAGGCAATGTGTTTCTTCCACCAGATGAAGAAACTGGTTTACCCTGATTTTGTTACACTCTGCACTCTTCTCCCAGGTGTTGTCAAGGCCAGTTTAATCGAAGATGCTTACAAAATCATCACCAACTTTCTTTACAATTGTGCAGACCAACCGGCTAATCTTTTCTGGGAAGACTTGATAGGCTCTATCTTGGCTGAAGCTGGAATAGACAATGCCGTTTCATTTTCTGAGAGATTGGTAGCTAATGGGATTTGTCGAGATGGTGACTCTATCCTGGTGCCAATAATCAGATATTCTTGTAAACATAATAACGTCTCAGGTGCTCGAACTTTATTCGAGAAATTCACAAAAGATCTTGGTGTCCAACCCAAACTCCCGACTTATAATCTGCTAATCGGCGGGCTTCTTGAAGCTGATATGATTGAAATAGCACAGGACGTGTTCCTACAGGTGAAGAGCACTGGTTGCATCCCAGATGTGGCGACCTACAACTTCTTGCTTGATGCTTATGGAAAATCAGGAAAAATCGACGAACTGTTTGAGCTATACAAAGAAATGTCTACCCATGAGTGCGAAGCAAACACAATTACTCACAACATTGTCATCTCCGGGCTTGTGAAGGCAGGAAATGTGGACGATGCTCTTGATTTATACTACGACCTTATGAGTGATCGGGACTTCTCCCCAACTGCCTGCACGTATGGTCCCCTTATCGATGGCCTCTCTAAGTCAGGAAGACTATATGAAGCAAAACAACTCTTTGAAGGAATGTTGGACTACGGTTGCAGGCCAAACTGTGCTATCTACAACATTCTCATTAACGGGTTTGGAAAAGCAGGTGAGGCTGATGCAGCGTGTGCATTGTTCAAAAGGATGGTAAAAGAAGGAGTAAGACCGGATCTCAAGACTTACTCGGTTCTAGTAGATTGCCTTTGTATGGTCGGAAGAGTTGATGAAGGCTTGCATTACTTCAAGGAGCTGAAGGAATCAGGCCTCAATCCCGATGTAGTATGTTACAATCTCATAATCAATGGACTTGGGAAATCTCATAGACTTGAAGAAGCTCTTGTGCTTTTCAACGAGATGAAGACCAGCAGAGGAATCACCCCTGATCTCTACACTTACAACTCCTTGATTCTAAACTTGGGTATCGCCGGGATGGTGGAAGAAGCTGGGAAGATTTACAATGAGATTCAAAGAGCAGGTCTTGAACCGAATGTTTTTACATTTAACGCTCTGATCCGCGGATACAGTTTGTCTGGAAAACCTGAGCACGCTTACGCTGTGTACCAGACAATGGTGACCGGTGGTTTTAGCCCCAACACAGGAACATACGAACAGCTCCCCAATAGAGCTTGACATTTTACGCAGCTAATACAAGTAGAGCTCTACACTAAGTGAAGCTTTATGTCCATGTGAAGTGTACAAAACATAACGTTGTGTAAATGTCTTATTGTTTTGTTTATTTACATGATGATATGTTCTTTTAAGGCC
CDS Sequence
Protein Sequence