Gene Details:

• Gene ID: AT5G08130
• Gene Symbol: BIM1
• Gene Name: BES1-INTERACTING MYC-LIKE1
• Description: basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
• TAIR Accession: locus:2181549
• Genome: Araport11_genome_release
• Species: Arabidopsis thaliana

Transcripts:

• AT5G08130.1     AT5G08130.2     AT5G08130.3     AT5G08130.4     AT5G08130.5     AT5G08130.6     AT5G08130.7     AT5G08130.8

Plant Ontology Annotations:

• PO:0009005  — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)

Gene Ontology:

• GO:0006351  — acts upstream of or within — DNA-templated transcription
• GO:0005515  — enables — protein binding
• GO:0006355  — acts upstream of or within — regulation of DNA-templated transcription
• GO:0000976  — enables — transcription cis-regulatory region binding
• GO:0003677  — enables — DNA binding
• GO:0005634  — located in — nucleus
• GO:0003700  — enables — DNA-binding transcription factor activity
• GO:0046983  — enables — protein dimerization activity
• GO:0006351  — involved in — DNA-templated transcription
• GO:0009742  — acts upstream of or within — brassinosteroid mediated signaling pathway
• GO:0042802  — enables — identical protein binding
• GO:1902448  — acts upstream of or within — positive regulation of shade avoidance

Function-related keywords:

• root

Literature:

• Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.   DOI:  10.1126/science.290.5499.2105 ;  PMID:  11118137
• Rapid identification of Arabidopsis insertion mutants by non-radioactive detection of T-DNA tagged genes.   DOI:  10.1046/j.1365-313x.2002.01416.x ;  PMID:  12383089
• The basic helix-loop-helix transcription factor family in plants: a genome-wide study of protein structure and functional diversity.   DOI:  10.1093/molbev/msg088 ;  PMID:  12679534
• BES1 accumulates in the nucleus in response to brassinosteroids to regulate gene expression and promote stem elongation.   DOI:  10.1016/s0092-8674(02)00721-3 ;  PMID:  12007405
• The Arabidopsis basic/helix-loop-helix transcription factor family.   DOI:  10.1105/tpc.013839 ;  PMID:  12897250
• Update on the basic helix-loop-helix transcription factor gene family in Arabidopsis thaliana.   DOI:  10.1105/tpc.151140 ;  PMID:  14600211
• Real-time RT-PCR profiling of over 1400 Arabidopsis transcription factors: and shoot-specific genes.   DOI:  10.1111/j.1365-313X.2004.02051.x ;  PMID:  15078338
• A new class of transcription factors mediates brassinosteroid-regulated gene expression in Arabidopsis.   DOI:  10.1016/j.cell.2004.11.044 ;  PMID:  15680330
• Regulation of the Arabidopsis root vascular initial population by LONESOME HIGHWAY.   DOI:  10.1242/dev.006296 ;  PMID:  17626058
• The Arabidopsis E3 SUMO ligase SIZ1 regulates plant growth and drought responses.   DOI:  10.1105/tpc.106.049981 ;  PMID:  17905899
• BIM1, a bHLH protein involved in brassinosteroid signalling, controls Arabidopsis embryonic patterning via interaction with DORNROSCHEN and DORNROSCHEN-LIKE.   DOI:  10.1007/s11103-008-9405-6 ;  PMID:  18830673
• Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.   DOI:  10.1016/j.diff.2010.02.003 ;  PMID:  20219281
• Differentiation of Arabidopsis guard cells: analysis of the networks incorporating the basic helix-loop-helix transcription factor, FAMA.   DOI:  10.1104/pp.110.167718 ;  PMID:  21245191
• The bHLH proteins BEE and BIM positively modulate the shade avoidance syndrome in Arabidopsis seedlings.   DOI:  10.1111/tpj.12264 ;  PMID:  23763263
• Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.   DOI:  10.1186/1471-2229-13-229 ;  PMID:  24377444
• SPL8 Acts Together with the Brassinosteroid-Signaling Component BIM1 in Controlling Arabidopsis thaliana Male Fertility.   DOI:  10.3390/plants2030416 ;  PMID:  27137384
• Establishment of Expression in the SHORTROOT-SCARECROW Transcriptional Cascade through Opposing Activities of Both Activators and Repressors.   DOI:  10.1016/j.devcel.2016.09.031 ;  PMID:  27923776
• UVR8 Interacts with BES1 and BIM1 to Regulate Transcription and Photomorphogenesis in Arabidopsis.   DOI:  10.1016/j.devcel.2017.12.028 ;  PMID:  29398622
• Coordination of Chloroplast Development through the Action of the GNC and GLK Transcription Factor Families.   DOI:  10.1104/pp.18.00414 ;  PMID:  30002259
• Photoexcited CRYPTOCHROME1 Interacts with Dephosphorylated BES1 to Regulate Brassinosteroid Signaling and Photomorphogenesis in Arabidopsis.   DOI:  10.1105/tpc.17.00994 ;  PMID:  30131420
• Genome-wide identification of EMBRYO-DEFECTIVE (EMB) genes required for growth and development in Arabidopsis.   DOI:  10.1111/nph.16071 ;  PMID:  31334862
• Cell type-specific proteomics uncovers a RAF15-SnRK2.6/OST1 kinase cascade in guard cells.   DOI:  10.1111/jipb.13536 ;  PMID:  37226855
• Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.   DOI:  10.1126/science.290.5499.2105 ;  PMID:  11118137
• The basic helix-loop-helix transcription factor family in plants: a genome-wide study of protein structure and functional diversity.   DOI:  10.1093/molbev/msg088 ;  PMID:  12679534
• Regulation of the Arabidopsis root vascular initial population by LONESOME HIGHWAY.   DOI:  10.1242/dev.006296 ;  PMID:  17626058

Sequence: