Gene Details:
- Gene ID: AT5G08170
- Gene Symbol: ATAIH, EMB1873
- Gene Name: AGMATINE IMINOHYDROLASE, EMBRYO DEFECTIVE 1873
- Description: porphyromonas-type peptidyl-arginine deiminase family protein;(source:Araport11)
- TAIR Accession: locus:2181499
- Genome: Araport11_genome_release
- Species: Arabidopsis thaliana
Transcripts:
Plant Ontology Annotations:
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
Gene Ontology:
- GO:0009793 — acts upstream of or within — embryo development ending in seed dormancy
- GO:0006596 — acts upstream of or within — polyamine biosynthetic process
- GO:0033388 — involved in — putrescine biosynthetic process from arginine
- GO:0009446 — involved in — putrescine biosynthetic process
- GO:0047632 — enables — agmatine deiminase activity
- GO:0005634 — located in — nucleus
Germplasm Phenotype:
Function-related keywords:
Literature:
- Identification of genes required for embryo development in Arabidopsis. DOI: 10.1104/pp.104.045179 ; PMID: 15266054
- Differential regulation of root arginine catabolism and polyamine metabolism in clubroot-susceptible and partially resistant Arabidopsis genotypes. DOI: 10.1104/pp.108.117432 ; PMID: 18305204
- Species specific amino acid sequence-protein local structure relationships: An analysis in the light of a structural alphabet. DOI: 10.1016/j.jtbi.2011.01.047 ; PMID: 21333657
- Dual functioning of plant arginases provides a third route for putrescine synthesis. DOI: 10.1016/j.plantsci.2017.05.011 ; PMID: 28716421
- Modulation of polyamine biosynthesis in Arabidopsis thaliana by a drought mitigating Pseudomonas putida strain. DOI: 10.1016/j.plaphy.2018.05.034 ; PMID: 29886249
- Genome-wide identification of EMBRYO-DEFECTIVE (EMB) genes required for growth and development in Arabidopsis. DOI: 10.1111/nph.16071 ; PMID: 31334862
Sequence:
cDNA Sequence
- >AT5G08170.4 CTGAGATAAAGTAAAAATTGACGGCGATTCTGGAGAACTCAATCTCGCTGTTCAAAAATCAAACTTCGATTTCGATTTTGTCCTTTTTTTTTTTTTATATGGATCCTGCTCGTAGTTTATCATTGTTCGAATTGCTGTTTTCTGTTTATTTGATGATTTCTCTGCTTCCTGGTTCGTTTTTGTAGAGTTTCCGATAAATTTTGTATAGCTTCTGTATGTCAAGTTAGCATCTAGATGTGACATGAGATGAGATCTTTTACATTGCAATCTATCATGGTTACAGATTCTGCAACCAAATCAGAATTTAAAGCATTTTCAGAACGGCAAGATAACTGGCGGCACAACGCTTTACCCGCACAACGAGTGTTTGCAGATGTTGCAAAGGCCATCTCAAAGTTCGAGCCTGTCACTGTCTGTGCTAGCCCTGCTCAGTGGGAAAATGCAAGGAAACAGCTTCCAGAGGATATAAGAGTTGTTGAGATGAGCATGAATGATTCTTGGTTCCGCGACTCTGGACCAACTTTCATTGTACGGAAAAGACCAGTAAAGCTCAGTTCTCTTAACCGAAACATTGCTGGGATCGACTGGAATTTCAATGCCTGGGGAGGAGCTAATGATGGCTGTTACAATGATTGGAGTCATGACCTTTTAGTTTCACGAAAGATTCTCGCTTTGGAACGAATTCCAAGATTTCAACATTCGATGATTCTTGAAGGAGGCAGCATCCATGTCGATGGGGAAGGAACCTGCCTTGTCACAGAAGAGTGTCTCTTGAACAAAAACCGAAACCCTCATATGAGTAAAGAGCAAATAGAGGAAGAACTTAAGAAGTACCTCGGAGTACAATCATTTATCTGGCTTCCTCGTGGTCTTTACGGGGATGAGGACACAAATGGTCACATTGATAACATGTGCTGCTTCGCTAGACCGGGAGTTGTGTTATTGTCTTGGACAGACGATGAAACCGATCCTCAATACGAAAGGTCTGTGGAAGCTCTTTCGGTTTTGTCGAATTCGATTGATGCTCGTGGAAGGAAGATTCAAGTCATTAAACTTTATATCCCGGAACCCCTTTATATGACTGAAGAAGAATCGTCTGGAATCACTCAGGATGGTGAAGCTATACCAAGACTTGCAGGGACAAGACTCGCAGCATCGTATGTGAATTTCTACATCGCCAATGGAGGAATAATCGCTCCACAATTCGGTGATCCAATACGTGATAAAGAAGCGATTCGTGTCCTCTCGGATACATTTCCTCATCACTCGGTTGTGGGAATCGAGAATGCAAGAGAGATCGTTCTTGCTGGAGGAAACATTCATTGTATAACGCAGCAGCAGCCGGCGGAGCCTACTTCCGTCGCCGAAAATGGCCACTGACTGTCTCTGCGCGCCACCGAGGGATTTATGAATCCTGGCCGTTGATATTTTAAAATACAGATTTGAAGCTTGAGGACGAACGAGAGCCGTTCATTAATTGGATCCTGTATTTTATGGTTCGTTGACTAAGAAATATATTATTGGGTCATCATTCCGATCAAACTTTGCTTGCATTATGGCATAACAATTAGATTTTTGTTCTGTTAATTATGCAAGTTTGAATAATTAATTTACATTTGTATTTTTTTAGTAGAATTTTCATTTTTTTTTTCTTAATTTGGCCATTCAAATCTCTACTTTTGAAGTATTTCATTGTTAGTTGTTATATTAGTTCCATA
- >AT5G08170.5 CTGAGATAAAGTAAAAATTGACGGCGATTCTGGAGAACTCAATCTCGCTGTTCAAAAATCAAACTTCGATTTCGATTTTGTCCTTTTTTTTTTTTTATATGGATCCTGCTCGTAGTTTATCATTGTTCGAATTGCTGTTTTCTGTTTATTTGATGATTTCTCTGCTTCCTGGTTCGTTTTTGTAGAGTTTCCGATAAATTTTGTATAGCTTCTGTATGTCAAGTTAGCATCTAGATGTGACATGAGATGAGATCTTTTACATTGCAATCTATCATGGTTACAGATTCTGCAACCAAATCAGAATTTAAAGCATTTTCAGAACGGCAAGATAACTGGCGGCACAACGCTTTACCCGCACAACGAGTGTTTGCAGATGTTGCAAAGGCCATCTCAAAGTTCGAGCCTGTCACTGTCTGTGCTAGCCCTGCTCAGTGGGAAAATGCAAGGAAACAGCTTCCAGAGGATATAAGAGTTGTTGAGATGAGCATGAATGATTCTTGGTTCCGCGACTCTGGACCAACTTTCATTGTACGGAAAAGACCAGTAAAGCTCAGTTCTCTTAACCGAAACATTGCTGGGATCGACTGGAATTTCAATGCCTGGGGAGGAGCTAATGATGGCTGTTACAATGATTGGAGTCATGACCTTTTAGTTTCACGAAAGATTCTCGCTTTGGAACGAATTCCAAGATTTCAACATTCGATGATTCTTGAAGGAGGCAGCATCCATGTCGATGGGGAAGGAACCTGCCTTGTCACAGAAGAGTGTCTCTTGAACAAAAACCGAAACCCTCATATGAGTAAAGAGCAAATAGAGGAAGAACTTAAGAAGTACCTCGGAGTACAATCATTTATCTGGCTTCCTCGTGGTCTTTACGGGGATGAGGACACAAATGGTCACATTGATAACATGTGCTGCTTCGCTAGACCGGGAGTTGTGTTATTGTCTTGGACAGACGATGAAACCGATCCTCAATACGAAAGGTCTGTGGAAGCTCTTTCGGTTTTGTCGAATTCGATTGATGCTCGTGGAAGGAAGATTCAAGTCATTAAACTTTATATCCCGGAACCCCTTTATATGACTGAAGAAGAATCGTCTGGAATCACTCAGGATGGTGAAGCTATACCAAGACTTGCAGGGACAAGACTCGCAGCATCGTATGTGAATTTCTACATCGCCAATGGAGGAATAATCGCTCCACAATTCGGTGATCCAATACGTGATAAAGAAGCGATTCGTGTCCTCTCGGATACATTTCCTCATCACTCGGTTGTGGGAATCGAGAATGCAAGAGAGATCGTTCTTGCTGGAGGAAACATTCATTGTATAACGCAGCAGCAGCCGGCGGAGCCTACTTCCGTCGCCGAAAATGGCCACTGACTGTCTCTGCGCGCCACCGAGGGATTTATGAATCCTGGCCGTTGATATTTTAAAATACAGATTTGAAGCTTGAGGACGAACGAGAGCCGTTCATTAATTGGATCCTGTATTTTATGGTTCGTTGACTAAGAAATATATTATTGGGTCATCATTCCGATCAAACTTTGCTTGCATTATGGCATAACAATTAGATTTTTGTTCTGTTAATTATGCAAGTTTGAATAATTAATTTACATTTGTATTTTTTTAGTAGAATTTTCATTTTTTTTTTCTTAATTTGGCCATTCAAATCTCTACTTTTGAAGTATTTCATTGTTAGTTGTTATATTAGTTCCATA
- >AT5G08170.1 CTGAGATAAAGTAAAAATTGACGGCGATTCTGGAGAACTCAATCTCGCTGTTCAAAAATCAAACTTCGATTTCGATTTTGTCCTTTTTTTTTTTTTATATGGATCCTGCTCGTAGTTTATCATTGTTCGAATTGCTGTTTTCTGTTTATTTGATGATTTCTCTGCTTCCTGGTTCGTTTTTGTAGAGTTTCCGATAAATTTTGTATAGCTTCTGTATGTCAAGTTAGCATCTAGATGTGACATGAGATGAGATCTTTTACATTGCAATCTATCATGGTTACAGATTCTGCAACCAAATCAGAATTTAAAGCATTTTCAGAACGGCAAGATAACTGGCGGCACAACGCTTTACCCGCACAACGAGTGTTTGCAGATGTTGCAAAGGCCATCTCAAAGTTCGAGCCTGTCACTGTCTGTGCTAGCCCTGCTCAGTGGGAAAATGCAAGGAAACAGCTTCCAGAGGATATAAGAGTTGTTGAGATGAGCATGAATGATTCTTGGTTCCGCGACTCTGGACCAACTTTCATTGTACGGAAAAGACCAGTAAAGCTCAGTTCTCTTAACCGAAACATTGCTGGGATCGACTGGAATTTCAATGCCTGGGGAGGAGCTAATGATGGCTGTTACAATGATTGGAGTCATGACCTTTTAGTTTCACGAAAGATTCTCGCTTTGGAACGAATTCCAAGATTTCAACATTCGATGATTCTTGAAGGAGGCAGCATCCATGTCGATGGGGAAGGAACCTGCCTTGTCACAGAAGAGTGTCTCTTGAACAAAAACCGAAACCCTCATATGAGTAAAGAGCAAATAGAGGAAGAACTTAAGAAGTACCTCGGAGTACAATCATTTATCTGGCTTCCTCGTGGTCTTTACGGGGATGAGGACACAAATGGTCACATTGATAACATGTGCTGCTTCGCTAGACCGGGAGTTGTGTTATTGTCTTGGACAGACGATGAAACCGATCCTCAATACGAAAGGTCTGTGGAAGCTCTTTCGGTTTTGTCGAATTCGATTGATGCTCGTGGAAGGAAGATTCAAGTCATTAAACTTTATATCCCGGAACCCCTTTATATGACTGAAGAAGAATCGTCTGGAATCACTCAGGATGGTGAAGCTATACCAAGACTTGCAGGGACAAGACTCGCAGCATCGTATGTGAATTTCTACATCGCCAATGGAGGAATAATCGCTCCACAATTCGGTGATCCAATACGTGATAAAGAAGCGATTCGTGTCCTCTCGGATACATTTCCTCATCACTCGGTTGTGGGAATCGAGAATGCAAGAGAGATCGTTCTTGCTGGAGGAAACATTCATTGTATAACGCAGCAGCAGCCGGCGGAGCCTACTTCCGTCGCCGAAAATGGCCACTGACTGTCTCTGCGCGCCACCGAGGGATTTATGAATCCTGGCCGTTGATATTTTAAAATACAGATTTGAAGCTTGAGGACGAACGAGAGCCGTTCATTAATTGGATCCTGTATTTTATGGTTCGTTGACTAAGAAATATATTATTGGGTCATCATTCCGATCAAACTTTGCTTGCATTATGGCATAACAATTAGATTTTTGTTCTGTTAATTATGCAAGTTTGAATAATTAATTTACATTTGTATTTTTTTAGTAGAATTTTCATTTTTTTTTTCTTAATTTGGCCATTCAAATCTCTACTTTTGAAGTATTTCATTGTTAGTTGTTATATTAGTTCCATA
- >AT5G08170.3 CTGAGATAAAGTAAAAATTGACGGCGATTCTGGAGAACTCAATCTCGCTGTTCAAAAATCAAACTTCGATTTCGATTTTGTCCTTTTTTTTTTTTTATATGGATCCTGCTCGTAGTTTATCATTGTTCGAATTGCTGTTTTCTGTTTATTTGATGATTTCTCTGCTTCCTGGTTCGTTTTTGTAGAGTTTCCGATAAATTTTGTATAGCTTCTGTATGTCAAGTTAGCATCTAGATGTGACATGAGATGAGATCTTTTACATTGCAATCTATCATGGTTACAGATTCTGCAACCAAATCAGAATTTAAAGCATTTTCAGAACGGCAAGATAACTGGCGGCACAACGCTTTACCCGCACAACGAGTGTTTGCAGATGTTGCAAAGGCCATCTCAAAGTTCGAGCCTGTCACTGTCTGTGCTAGCCCTGCTCAGTGGGAAAATGCAAGGAAACAGCTTCCAGAGGATATAAGAGTTGTTGAGATGAGCATGAATGATTCTTGGTTCCGCGACTCTGGACCAACTTTCATTGTACGGAAAAGACCAGTAAAGCTCAGTTCTCTTAACCGAAACATTGCTGGGATCGACTGGAATTTCAATGCCTGGGGAGGAGCTAATGATGGCTGTTACAATGATTGGAGTCATGACCTTTTAGTTTCACGAAAGATTCTCGCTTTGGAACGAATTCCAAGATTTCAACATTCGATGATTCTTGAAGGAGGCAGCATCCATGTCGATGGGGAAGGAACCTGCCTTGTCACAGAAGAGTGTCTCTTGAACAAAAACCGAAACCCTCATATGAGTAAAGAGCAAATAGAGGAAGAACTTAAGAAGTACCTCGGAGTACAATCATTTATCTGGCTTCCTCGTGGTCTTTACGGGGATGAGGACACAAATGGTCACATTGATAACATGTGCTGCTTCGCTAGACCGGGAGTTGTGTTATTGTCTTGGACAGACGATGAAACCGATCCTCAATACGAAAGGTCTGTGGAAGCTCTTTCGGTTTTGTCGAATTCGATTGATGCTCGTGGAAGGAAGATTCAAGTCATTAAACTTTATATCCCGGAACCCCTTTATATGACTGAAGAAGAATCGTCTGGAATCACTCAGGATGGTGAAGCTATACCAAGACTTGCAGGGACAAGACTCGCAGCATCGTATGTGAATTTCTACATCGCCAATGGAGGAATAATCGCTCCACAATTCGGTGATCCAATACGTGATAAAGAAGCGATTCGTGTCCTCTCGGATACATTTCCTCATCACTCGGTTGTGGGAATCGAGAATGCAAGAGAGATCGTTCTTGCTGGAGGAAACATTCATTGTATAACGCAGCAGCAGCCGGCGGAGCCTACTTCCGTCGCCGAAAATGGCCACTGACTGTCTCTGCGCGCCACCGAGGGATTTATGAATCCTGGCCGTTGATATTTTAAAATACAGATTTGAAGCTTGAGGACGAACGAGAGCCGTTCATTAATTGGATCCTGTATTTTATGGTTCGTTGACTAAGAAATATATTATTGGGTCATCATTCCGATCAAACTTTGCTTGCATTATGGCATAACAATTAGATTTTTGTTCTGTTAATTATGCAAGTTTGAATAATTAATTTACATTTGTATTTTTTTAGTAGAATTTTCATTTTTTTTTTCTTAATTTGGCCATTCAAATCTCTACTTTTGAAGTATTTCATTGTTAGTTGTTATATTAGTTCCATA
- >AT5G08170.2 CTGAGATAAAGTAAAAATTGACGGCGATTCTGGAGAACTCAATCTCGCTGTTCAAAAATCAAACTTCGATTTCGATTTTGTCCTTTTTTTTTTTTTATATGGATCCTGCTCGTAGTTTATCATTGTTCGAATTGCTGTTTTCTGTTTATTTGATGATTTCTCTGCTTCCTGGTTCGTTTTTGTAGAGTTTCCGATAAATTTTGTATAGCTTCTGTATGTCAAGTTAGCATCTAGATGTGACATGAGATGAGATCTTTTACATTGCAATCTATCATGGTTACAGATTCTGCAACCAAATCAGAATTTAAAGCATTTTCAGAACGGCAAGATAACTGGCGGCACAACGCTTTACCCGCACAACGAGTGTTTGCAGATGTTGCAAAGGCCATCTCAAAGTTCGAGCCTGTCACTGTCTGTGCTAGCCCTGCTCAGTGGGAAAATGCAAGGAAACAGCTTCCAGAGGATATAAGAGTTGTTGAGATGAGCATGAATGATTCTTGGTTCCGCGACTCTGGACCAACTTTCATTGTACGGAAAAGACCAGTAAAGCTCAGTTCTCTTAACCGAAACATTGCTGGGATCGACTGGAATTTCAATGCCTGGGGAGGAGCTAATGATGGCTGTTACAATGATTGGAGTCATGACCTTTTAGTTTCACGAAAGATTCTCGCTTTGGAACGAATTCCAAGATTTCAACATTCGATGATTCTTGAAGGAGGCAGCATCCATGTCGATGGGGAAGGAACCTGCCTTGTCACAGAAGAGTGTCTCTTGAACAAAAACCGAAACCCTCATATGAGTAAAGAGCAAATAGAGGAAGAACTTAAGAAGTACCTCGGAGTACAATCATTTATCTGGCTTCCTCGTGGTCTTTACGGGGATGAGGACACAAATGGTCACATTGATAACATGTGCTGCTTCGCTAGACCGGGAGTTGTGTTATTGTCTTGGACAGACGATGAAACCGATCCTCAATACGAAAGGTCTGTGGAAGCTCTTTCGGTTTTGTCGAATTCGATTGATGCTCGTGGAAGGAAGATTCAAGTCATTAAACTTTATATCCCGGAACCCCTTTATATGACTGAAGAAGAATCGTCTGGAATCACTCAGGATGGTGAAGCTATACCAAGACTTGCAGGGACAAGACTCGCAGCATCGTATGTGAATTTCTACATCGCCAATGGAGGAATAATCGCTCCACAATTCGGTGATCCAATACGTGATAAAGAAGCGATTCGTGTCCTCTCGGATACATTTCCTCATCACTCGGTTGTGGGAATCGAGAATGCAAGAGAGATCGTTCTTGCTGGAGGAAACATTCATTGTATAACGCAGCAGCAGCCGGCGGAGCCTACTTCCGTCGCCGAAAATGGCCACTGACTGTCTCTGCGCGCCACCGAGGGATTTATGAATCCTGGCCGTTGATATTTTAAAATACAGATTTGAAGCTTGAGGACGAACGAGAGCCGTTCATTAATTGGATCCTGTATTTTATGGTTCGTTGACTAAGAAATATATTATTGGGTCATCATTCCGATCAAACTTTGCTTGCATTATGGCATAACAATTAGATTTTTGTTCTGTTAATTATGCAAGTTTGAATAATTAATTTACATTTGTATTTTTTTAGTAGAATTTTCATTTTTTTTTTCTTAATTTGGCCATTCAAATCTCTACTTTTGAAGTATTTCATTGTTAGTTGTTATATTAGTTCCATA
CDS Sequence
Protein Sequence