Gene Details:

• Gene ID: AT5G10510
• Gene Symbol: AIL6, PLT3
• Gene Name: AINTEGUMENTA-like 6, PLETHORA 3
• Description: AINTEGUMENTA-like 6;(source:Araport11)
• TAIR Accession: locus:2142534
• Genome: Araport11_genome_release
• Species: Arabidopsis thaliana

Transcripts:

• AT5G10510.1     AT5G10510.2     AT5G10510.3     AT5G10510.4     AT5G10510.7     AT5G10510.6     AT5G10510.5

Plant Ontology Annotations:

• PO:0009005  — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)

Gene Ontology:

• GO:0010311  — acts upstream of or within — lateral root formation
• GO:0060774  — acts upstream of or within — auxin mediated signaling pathway involved in phyllotactic patterning
• GO:0010492  — acts upstream of or within — maintenance of shoot apical meristem identity
• GO:0003700  — enables — DNA-binding transcription factor activity
• GO:0005634  — located in — nucleus
• GO:0010080  — acts upstream of or within — regulation of floral meristem growth
• GO:0006355  — involved in — regulation of DNA-templated transcription
• GO:0003677  — enables — DNA binding
• GO:0048364  — acts upstream of or within — root development
• GO:0006355  — acts upstream of or within — regulation of DNA-templated transcription
• GO:0060772  — acts upstream of or within — leaf phyllotactic patterning
• GO:0000976  — enables — transcription cis-regulatory region binding
• GO:0035265  — acts upstream of or within — organ growth
• GO:1905392  — acts upstream of or within — plant organ morphogenesis
• GO:0009908  — acts upstream of or within — flower development
• GO:0060771  — acts upstream of or within — phyllotactic patterning
• GO:1990110  — acts upstream of or within — callus formation

Germplasm Phenotype:

• plt3-1  — Short roots and shortened root meristem.
• plt3-1/plt2-2/plt1-4  — Rootless.Embryonic root differentiates 3 days after germination. Adventitious roots arrest 6 days after germination.

Function-related keywords:

• root

Literature:

• AINTEGUMENTA promotes petal identity and acts as a negative regulator of AGAMOUS.   DOI:  10.1105/tpc.12.8.1357 ;  PMID:  10948255
• Pattern formation and growth during floral organogenesis: HUELLENLOS and AINTEGUMENTA are required for the formation of the proximal region of the ovule primordium in Arabidopsis thaliana.   DOI:  10.1242/dev.125.14.2555 ;  PMID:  9636071
• The AP2 domain of APETALA2 defines a large new family of DNA binding proteins in Arabidopsis.   DOI:  10.1073/pnas.94.13.7076 ;  PMID:  9192694
• AINTEGUMENTA, an APETALA2-like gene of Arabidopsis with pleiotropic roles in ovule development and floral organ growth.   DOI:  10.1105/tpc.8.2.155 ;  PMID:  8742707
• The AINTEGUMENTA gene of Arabidopsis required for ovule and female gametophyte development is related to the floral homeotic gene APETALA2.   DOI:  10.1105/tpc.8.2.137 ;  PMID:  8742706
• Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.   DOI:  10.1126/science.290.5499.2105 ;  PMID:  11118137
• Phylogeny and domain evolution in the APETALA2-like gene family.   DOI:  10.1093/molbev/msj014 ;  PMID:  16151182
• AINTEGUMENTA-like (AIL) genes are expressed in young tissues and may specify meristematic or division-competent states.   DOI:  10.1007/s11103-005-0955-6 ;  PMID:  15988559
• PLETHORA proteins as dose-dependent master regulators of Arabidopsis root development.   DOI:  10.1038/nature06206 ;  PMID:  17960244
• Arabidopsis PLETHORA transcription factors control phyllotaxis.   DOI:  10.1016/j.cub.2011.05.009 ;  PMID:  21700457
• Enhanced Y1H assays for Arabidopsis.   DOI:  10.1038/nmeth.1750 ;  PMID:  22037706
• A PLETHORA-auxin transcription module controls cell division plane rotation through MAP65 and CLASP.   DOI:  10.1016/j.cell.2012.02.051 ;  PMID:  22500804
• Systematic identification of functional plant modules through the integration of complementary data sources.   DOI:  10.1104/pp.112.196725 ;  PMID:  22589469
• Phyllotaxis and rhizotaxis in Arabidopsis are modified by three PLETHORA transcription factors.   DOI:  10.1016/j.cub.2013.04.048 ;  PMID:  23684976
• Promoter-based integration in plant defense regulation.   DOI:  10.1104/pp.114.248716 ;  PMID:  25352272
• An Arabidopsis gene regulatory network for secondary cell wall synthesis.   DOI:  10.1038/nature14099 ;  PMID:  25533953
• PLETHORA Genes Control Regeneration by a Two-Step Mechanism.   DOI:  10.1016/j.cub.2015.02.022 ;  PMID:  25819565
• AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis.   DOI:  10.1104/pp.15.00969 ;  PMID:  26537561
• The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.   DOI:  10.1105/tpc.16.00656 ;  PMID:  27920338
• Wounding Triggers Callus Formation via Dynamic Hormonal and Transcriptional Changes.   DOI:  10.1104/pp.17.01035 ;  PMID:  28904073
• PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.   DOI:  10.1073/pnas.1714410114 ;  PMID:  29078398
• Transcriptional regulation of nitrogen-associated metabolism and growth.   DOI:  10.1038/s41586-018-0656-3 ;  PMID:  30356219
• A PXY-Mediated Transcriptional Network Integrates Signaling Mechanisms to Control Vascular Development in Arabidopsis.   DOI:  10.1105/tpc.19.00562 ;  PMID:  31806676
• ABI3 mediated repression of RAV1 gene expression promotes efficient dehydration stress response in Arabidopsis thaliana.   DOI:  10.1016/j.bbagrm.2020.194582 ;  PMID:  32442719
• Early Low-Fluence Red Light or Darkness Modulates the Shoot Regeneration Capacity of Excised Arabidopsis Roots.   DOI:  10.3390/plants9101378 ;  PMID:  33081176
• Transcriptional landscapes of de novo root regeneration from detached Arabidopsis leaves revealed by time-lapse and single-cell RNA sequencing analyses.   DOI:  10.1016/j.xplc.2022.100306 ;  PMID:  35605192
• AINTEGUMENTA promotes petal identity and acts as a negative regulator of AGAMOUS.   DOI:  10.1105/tpc.12.8.1357 ;  PMID:  10948255
• KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.   DOI:  10.1046/j.1365-313x.1999.00352.x ;  PMID:  10074711
• Pattern formation and growth during floral organogenesis: HUELLENLOS and AINTEGUMENTA are required for the formation of the proximal region of the ovule primordium in Arabidopsis thaliana.   DOI:  10.1242/dev.125.14.2555 ;  PMID:  9636071
• The AP2 domain of APETALA2 defines a large new family of DNA binding proteins in Arabidopsis.   DOI:  10.1073/pnas.94.13.7076 ;  PMID:  9192694
• AINTEGUMENTA, an APETALA2-like gene of Arabidopsis with pleiotropic roles in ovule development and floral organ growth.   DOI:  10.1105/tpc.8.2.155 ;  PMID:  8742707
• The AINTEGUMENTA gene of Arabidopsis required for ovule and female gametophyte development is related to the floral homeotic gene APETALA2.   DOI:  10.1105/tpc.8.2.137 ;  PMID:  8742706
• Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.   DOI:  10.1126/science.290.5499.2105 ;  PMID:  11118137
• Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.   DOI:  10.1093/molbev/msj051 ;  PMID:  16280546

Sequence: