Gene Details:
- Gene ID: AT5G13730
- Gene Symbol: SIG4, SIGD
- Gene Name: sigma factor 4
- Description: sigma factor 4;(source:Araport11)
- TAIR Accession: locus:2173249
- Genome: Araport11_genome_release
- Species: Arabidopsis thaliana
Transcripts:
Gene Ontology:
- GO:0006352 — acts upstream of or within — DNA-templated transcription initiation
- GO:0071482 — involved in — cellular response to light stimulus
- GO:0009507 — located in — chloroplast
- GO:0006352 — involved in — DNA-templated transcription initiation
- GO:2001141 — involved in — regulation of RNA biosynthetic process
- GO:0016987 — enables — sigma factor activity
Germplasm Phenotype:
- sig4-1 — Lack of SIG4 in sig4-1 plants cause a strong decrease of ndhF precursor RNA and leads to a strong decrease of NDH complex amount and activity
Literature:
- Three new nuclear genes, sigD, sigE and sigF, encoding putative plastid RNA polymerase sigma factors in Aarabidopsis thaliana. DOI: 10.1016/s0014-5793(00)01965-7 ; PMID: 10984613
- An Arabidopsis sigma factor (SIG2)-dependent expression of plastid-encoded tRNAs in chloroplasts. DOI: 10.1093/pcp/pce155 ; PMID: 11673617
- Inactivation of the chloroplast ATP synthase gamma subunit results in high non-photochemical fluorescence quenching and altered nuclear gene expression in Arabidopsis thaliana. DOI: 10.1074/jbc.M308435200 ; PMID: 14576160
- Gene expression profiles of Arabidopsis Cvi seeds during dormancy cycling indicate a common underlying dormancy control mechanism. DOI: 10.1111/j.1365-313X.2006.02738.x ; PMID: 16709196
- Identification of plant promoter constituents by analysis of local distribution of short sequences. DOI: 10.1186/1471-2164-8-67 ; PMID: 17346352
- Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection. DOI: 10.1104/pp.108.121038 ; PMID: 18650403
- Chloroplast RNA polymerases: Role in chloroplast biogenesis. DOI: 10.1016/j.bbabio.2015.02.004 ; PMID: 25680513
Sequence:
cDNA Sequence
- >AT5G13730.1 GCGGATAACTGATATGACACAGAGAGAGGCTCTATGATATAAGTAAGTAACACAAGAGAGAATTATCTTCTTCTTCCATTTTTATTGGACCAAAAAGAAGATAGATAACAAAAATAGAAAAATCTAAGGTGTGGGAAGCTCTGCAGCTCATCCATCCATGGCGACGACGATTCCCACTACAGCTACCGCAACTATGTGTCCGTCTCCTCCTGTCCCTACAATCTCTCCCTTACTCAGAACGACTCACCAATGTCAACCATCTCCTTCTTTATCATCCCCATTTTCTATAAAGCTTAGTACGGCTCTGGTTTGCGGTGACACTACAGTGGATAGAGTGGTTGATAGCTCCGTGATGATCAAACCTGAGAAATGGGGAATTCAGTCAGAAAAGAGAAGGAAGAGGAGAAGAAGAAGAAGAGTAGGTTACGAACGTTTGGAGCCTGAAGAAGAGGAAAATGCTGGCGTAGAAGCAGAAGCAGAGACAATTAGTGTTCCTGTTGTTGGAGCTTCACGATCTGGGTTTTTGAGTCGTTTAGAGGAGGTTCAGCTTTGCTTGTACCTCAAGGAAGGAGCAAAACTTGAAAATTTGGGAACAAGTGTTGAAGAGAATGAAATGGTATCAGTTTTGTTAGCCAGTGGCAGAGGGAAGAAGAAGCGTAGTGCAAATGAAATACTATGCCGTAGAAAAGAAGCGAGAGAAAAGATTACTCGTTGTTACCGTAGGTTGGTTGTTTCTATTGCAACAGGGTACCAAGGCAAAGGTTTGAATTTGCAAGACCTTATTCAGGAAGGAAGCATAGGGCTGCTTCGTGGAGCTGAGAGATTTGATCCCGACCGAGGATACAAACTATCAACTTATGTCTACTGGTGGATCAAACAGGCCATCTTAAGGGCTATAGCGCATAAATCTAGACTTGTCAAATTGCCGGGAAGCATGTGGGAGTTAACGGCAAAAGTTGCAGAAGCTAGTAATGTGTTGACCAGAAAACTAAGAAGGCAACCAAGCTGTGAAGAGATTGCAGAGCACCTAAACCTCAATGTATCCGCGGTTAGACTAGCTGTGGAGCGTAGCAGATCCCCTGTTTCGTTGGACCGAGTCGCGTCTCAAAATGGCCGCATGACATTGCAGGAAATTGTACGGGGACCAGATGAAACAAGGCCAGAGGAGATGGTGAAAAGGGAACACATGAAGCATGAGATTGAGCAACTCTTAGGAAGTCTTACCGCTAGAGAATCTCGTGTATTGGGACTTTACTTTGGGCTCAACGGAGAGACTCCTATGTCGTTTGAAGAGATAGGTAAGTCGCTGAAGCTTTCGAGAGAGAGGGTGAGACAAATCAATGGCATTGCTTTGAAGAAGCTACGGAATGTACATAATGTGAATGATTTGAAAATATACTATTCCTCTAGTGAATAAAAAGCAAATAAATTGGTTCTTCATAATCATTAATAGC
CDS Sequence
Protein Sequence