Gene Details:

• Gene ID: AT5G39550
• Gene Symbol: ORTH1, VIM3
• Gene Name: ORTHRUS 1, VARIANT IN METHYLATION 3
• Description: Zinc finger (C3HC4-type RING finger) family protein;(source:Araport11)
• TAIR Accession:
• Genome: Araport11_genome_release
• Species: Arabidopsis thaliana

Transcripts:

• AT5G39550.1

Literature:

• Evaluation and classification of RING-finger domains encoded by the Arabidopsis genome.   DOI:  10.1186/gb-2002-3-4-research0016 ;  PMID:  11983057
• DNA array analyses of Arabidopsis thaliana lacking a vacuolar Na+/H+ antiporter: impact of AtNHX1 on gene expression.   DOI:  10.1111/j.1365-313X.2004.02253.x ;  PMID:  15546358
• Functional analysis of the RING-type ubiquitin ligase family of Arabidopsis.   DOI:  10.1104/pp.104.052423 ;  PMID:  15644464
• VIM1, a methylcytosine-binding protein required for centromeric heterochromatinization.   DOI:  10.1101/gad.1512007 ;  PMID:  17242155
• The SRA methyl-cytosine-binding domain links DNA and histone methylation.   DOI:  10.1016/j.cub.2007.01.009 ;  PMID:  17239600
• ATR and ATM play both distinct and additive roles in response to ionizing radiation.   DOI:  10.1111/j.1365-313X.2006.02931.x ;  PMID:  17227549
• Three SRA-domain methylcytosine-binding proteins cooperate to maintain global CpG methylation and epigenetic silencing in Arabidopsis.   DOI:  10.1371/journal.pgen.1000156 ;  PMID:  18704160
• Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis.   DOI:  10.1104/pp.108.126375 ;  PMID:  18775970
• Functional compensation of primary and secondary metabolites by duplicate genes in Arabidopsis thaliana.   DOI:  10.1093/molbev/msq204 ;  PMID:  20736450
• Identification and structural characterization of FYVE domain-containing proteins of Arabidopsis thaliana.   DOI:  10.1186/1471-2229-10-157 ;  PMID:  20678208
• Regulation of imprinted gene expression in Arabidopsis endosperm.   DOI:  10.1073/pnas.1019273108 ;  PMID:  21257907
• Comprehensive analysis of silencing mutants reveals complex regulation of the Arabidopsis methylome.   DOI:  10.1016/j.cell.2012.10.054 ;  PMID:  23313553
• VIM proteins regulate transcription exclusively through the MET1 cytosine methylation pathway.   DOI:  10.4161/epi.28906 ;  PMID:  24762702
• Arabidopsis VIM proteins regulate epigenetic silencing by modulating DNA methylation and histone modification in cooperation with MET1.   DOI:  10.1093/mp/ssu079 ;  PMID:  25009302
• APURINIC/APYRIMIDINIC ENDONUCLEASE2 and ZINC FINGER DNA 3'-PHOSPHOESTERASE Play Overlapping Roles in the Maintenance of Epigenome and Genome Stability.   DOI:  10.1105/tpc.18.00287 ;  PMID:  30135084
• Helical and β-Turn Conformations in the Peptide Recognition Regions of the VIM1 PHD Finger Abrogate H3K4 Peptide Recognition.   DOI:  10.1021/acs.biochem.1c00191 ;  PMID:  34404204
• ORTH/VIM proteins that regulate DNA methylation are functional ubiquitin E3 ligases.   DOI:  10.1111/j.1365-313X.2008.03631.x ;  PMID:  18643997
• Repertoire of plant RING E3 ubiquitin ligases revisited: New groups counting gene families and single genes.   DOI:  10.1371/journal.pone.0203442 ;  PMID:  30169501

Sequence: