Gene Details:
- Gene ID: BnaA04g01810D
- Gene Symbol: BnaA04.SHP1
- Gene Name: Shatterproof
- Genome: B. napus reference genome Darmor v4.1
- Species: Brassica napus
Functional Descriptions:
- Shatterproof (SHP1) is a MADS-BOX transcript factor (TF), along with SHP2 control the lignification of dehiscence zone cells in plants
- The transcript level of BnaA04.SHP1 (BnaA04g01810D) is significantly negatively correlated with SOC.
- Haplotype analysis shows that haplotype N has a higher expression level of BnaA04.SHP1.
Function-related keywords:
Literature:
- Characterization of novel loci controlling seed oil content in Brassica napus by marker metabolite-based multi-omics analysis. DOI: 10.1186/s13059-023-02984-z ; PMID: 37337206
Related News:
Gene Resources:
Sequences:
cDNA Sequence
- >BnaA04g01810D
CTGAAAGTGGGGTCTTATACCTGCACAACAATATTCCTTCAAATGAAACTCAGAAACCAAAACAGAAATAACAAAAATAAAGAGAGATATTTTTACAAGAACAACATACTTTTTAGAAAAGCAGAAGCAGCAGTTAAGTGATATTGAGATAAATAATAATATATTATCTCTTCAAAAGAGTTTCTCATTAGTAACTTCTCCTTTGTGCTGATCTATCATATAATCTTCAAAACCCAGGTAAGGTTTTGAATACTATACATTAGAGACTAACCCTAAAAATACAAAGTTTATTTGTTTTTAATTCAGTTTCTGATCTTTGAGTTACCAATTCGTGGGTTTGATATGTTTCTTGGTTATTGTTTATTGTTTATCTACAAAGAGATTTGATCATTATACAGCAGAACATTAATTAGTTAACCCTAAAACACCAAGTTTTTTGATGAAAGTTTTTTTCCCTTTGAAGTAACAATCTCTTTTAATTTTTGAATGACCTAATCAACTATGATCTGTTAATTTCTAGGCTATTCTTGATCTGCAAAAATATTTAATCATCAAGCTTACCTACCCTCGCTCTCTCTAGATCAATCATCTCCCTCCTCTTTTTGTTGTTTTTATTCATTTCTTGATATTACAGAATCAATGGAGGAAGGTGGGAGTAGTCACGACGCAGAGAGTAACAAGAAGCTAGTGAGAGGGAAGATAGAGATAAAGAGGATAGAGAACACGACAAGTCGTCAGGTAACTTTCTGCAAACGACGCAATGGTCTTCTCAAGAAAGCTTATGAGCTCTCTGTCTTGTGTGATGCGGAAGTTGCACTTGTTGTCTTTTCCACTCGTGGCCGTCTCTATGAGTACGCTAACAACAGGAAATATTTGTCTTGTCTTCTCAACTCGTTAGCCGTTTTTAGTTTCACTCGTTTTATGAAACATTGGAACCTGATGCATGTCTGTGTGAAGGGTACAATTGAAAGGTACAAGAAAGCTTGTTCCGATGCCGTCAACCCTCCTACTGTGACCGAAGCTAATACTCAGTATTATCAGCAAGAAGCCTCTAAGCTTCGGAGGCAGATTCGGGACATTCAAAATTCTAACAGGCATATTGTTGGAGAATCACTTGGTTCCTTGAACTTCAAGGAACTCAAAAACCTAGAAGGAAGGCTTGAAAAAGGAATAAACCGCGTCCGATCCAAGAAGAATGAGTTGTTAGTGGCAGAGCTTGAGTATATGCAGAAGAGGGAGATAGAGTTGCAACATGATAACATGTACCTGAGAGCTAAGATAACACACTGCGCTAGGCTGGATCCGGAACAACAGGAATCGAGTGTGATACAAGGAACTGCGGTTTATGAATCTGGTCTGTCTTCTCATGATCAGTCGCAGAATTATAACCGGAGCTATATTCCGGTGAACCTTCTTGAACCGAATCAACAATTCTCCGGTCAAGACCAACCTCCTCTTCAACTTGTTTAAGCTTTAACATGATGAAAACTTGTTTCTTCCACTCGAAACGATCTAGAGAGCAGGAGTACATATATTTATGCGACTTCTTATGCATAGTTTAGGTTCCGATGATAATAAAACATAACTCTTGTTCCTATTGCCTTTTTTAGTTTTGTCAAAATAAAAATGATTTGACAAAACTTAACTTCATTATGGAATTATTCCATTTTATAC
CDS Sequence
- >BnaA04g01810D
ATGGAGGAAGGTGGGAGTAGTCACGACGCAGAGAGTAACAAGAAGCTAGTGAGAGGGAAGATAGAGATAAAGAGGATAGAGAACACGACAAGTCGTCAGGTAACTTTCTGCAAACGACGCAATGGTCTTCTCAAGAAAGCTTATGAGCTCTCTGTCTTGTGTGATGCGGAAGTTGCACTTGTTGTCTTTTCCACTCGTGGCCGTCTCTATGAGTACGCTAACAACAGGAAATATTTGTCTTGTCTTCTCAACTCGTTAGCCGTTTTTAGTTTCACTCGTTTTATGAAACATTGGAACCTGATGCATGTCTGTGTGAAGGGTACAATTGAAAGGTACAAGAAAGCTTGTTCCGATGCCGTCAACCCTCCTACTGTGACCGAAGCTAATACTCAGTATTATCAGCAAGAAGCCTCTAAGCTTCGGAGGCAGATTCGGGACATTCAAAATTCTAACAGGCATATTGTTGGAGAATCACTTGGTTCCTTGAACTTCAAGGAACTCAAAAACCTAGAAGGAAGGCTTGAAAAAGGAATAAACCGCGTCCGATCCAAGAAGAATGAGTTGTTAGTGGCAGAGCTTGAGTATATGCAGAAGAGGGAGATAGAGTTGCAACATGATAACATGTACCTGAGAGCTAAGATAACACACTGCGCTAGGCTGGATCCGGAACAACAGGAATCGAGTGTGATACAAGGAACTGCGGTTTATGAATCTGGTCTGTCTTCTCATGATCAGTCGCAGAATTATAACCGGAGCTATATTCCGGTGAACCTTCTTGAACCGAATCAACAATTCTCCGGTCAAGACCAACCTCCTCTTCAACTTGTTTAA
Protein Sequence
- >BnaA04g01810D
MEEGGSSHDAESNKKLVRGKIEIKRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSTRGRLYEYANNRKYLSCLLNSLAVFSFTRFMKHWNLMHVCVKGTIERYKKACSDAVNPPTVTEANTQYYQQEASKLRRQIRDIQNSNRHIVGESLGSLNFKELKNLEGRLEKGINRVRSKKNELLVAELEYMQKREIELQHDNMYLRAKITHCARLDPEQQESSVIQGTAVYESGLSSHDQSQNYNRSYIPVNLLEPNQQFSGQDQPPLQLV