Gene Details:

Functional Descriptions:

  • In this study, we revealed that nucleoporin-coding gene OsSEH1 was a positive regulator of cold stress in rice.
  • Physiological assays showed that the activity of antioxidant enzymes showed a significant difference between OsSEH1 knock-out lines and wild type under cold stress.
  • Metabolome analysis revealed that the contents of large-scale flavonoids serving as ROS scavengers were lower in OsSEH1 mutants compared with wild type under cold stress.
  • Transcriptome analysis indicated that the DEGs between OsSEH1 knock-out lines and wild type plants were enriched in defense response, regulation of hormone levels and oxidation-reduction process.
  • In addition, Exogenous ABA application assays indicated that OsSEH1 lines had hypersensitive phenotypes compared with wild type plants, suggesting that OsSEH1 may mediate cold tolerance by regulating ABA levels.
  • Multi-omics approach reveals the contribution of OsSEH1 to rice cold tolerance.
  • Integration of transcriptomic and metabolic profiling revealed that OsSEH1 plays a role in the oxidation-reduction process by coordinately regulating genes expression and metabolite accumulation involved in phenylpropanoid and flavonoid biosynthetic pathway.

Literature:

Gene Resources:

  • NCBI ID:
  • UniProt accessions:

Sequences:

cDNA Sequence
  • >LOC_Os01g43250.1 cDNA AGTGTCCGTACACCCAACCCACCTGGGCCGCCGCGTCTCGTTCTCTCCTCCAACAAACCCACCTCCGAGCAGGCTGCGTGCTCTCGCCGCCGCCGCCACCGTAGGCGAGGGCATCTCATCTCAGGGAGGAATGGCGGAGCGGCAGGTGGCGGAGCTGGGGGCCGGCGCGGCGTGCGTAGGCTGGAACCACTGCGGCCGCCGCCTCGCCGCCGGCGCCGTCGACGGCTTCGTCTCCGTCTACGACTCCCAGTCCCAGCCGTCGCCTTCCTCCAAGTGGCAGGCCCACAAGCATGCGATCCTGAATATCGTGTGGCTTCCTCCGGACTATGGGGATGCTATAGCTTGTGTTTGTGCTGATGGGACGCTATCTTTGTGGGAGGAGGTCAGTGAAGATGATCAACTTCCAACCTGGAGGAAATGTAAAGTATTTGAGAGTGGCAATTCTCACATACTACACGTACAGTTTGGATTACAACTGTCTAGTCTAAAAATGGTTACTGCATACTCAGATGGCCAAGTGAAGGTTTATGAGCTCTTGGACTCGTTGGAATTAGACAAGTGGCAGCTTCAGGCGGAGTTCCAGAACATTACAGATCCTGTTTCCCGATCTGGGAAGCCAGCATGTACTTCTGCATCAATTGCATGGAGTCCAAGAAGAGGTGAAAGTCAGCAGGCTAGTTTTGCTATTGGTTTCAATTCAGACTCTCCAAATTTCAACTCTTGTAAGATTTGGGAGTTCGAAGAAGCTCACCAGCGTTGGCTCCCCCTTGTTGAGCTTGGCTCACCTCAGGATAAGGGGGATATAGTGCATGCTGTAGCATGGGCTCCTAACATCGGCAGACCATATGAGATCATAGCAGTTGCGACATGTAAAGGAATCGCAATCTGGCATATAGGCTTAAGCGCTGAATCTGACGGCAGCCTGTCAACTGAGAATGTGGCTGTACTTTCTGGCCATGATGGGGAGGTCCTGCAACTGGAATGGGACATGGGCGGTATGACACTCGCATCGACCGGAGGTGATGGCATGGTTAAGCTATGGCAGGCTAACCTGAATGGAGTTTGGCATGAACAAGCTGTGCTTGACTGCAATGTGTCTCACTAGGGTTGCATATCTTTTTTTTCTGGTTGGAACTGGGGCCTTGGGGGATTCCCAGCTCCCAAGTTGTGCAAACAAGCATTTAAGTGGATTGCTTATCAATGTTAAAGAATTCTGCAAGATCTCTTTCAATTATACTGTCGTGCACGTGGTTGGTTTT
CDS Sequence
  • >LOC_Os01g43250.1 CDS ATGGCGGAGCGGCAGGTGGCGGAGCTGGGGGCCGGCGCGGCGTGCGTAGGCTGGAACCACTGCGGCCGCCGCCTCGCCGCCGGCGCCGTCGACGGCTTCGTCTCCGTCTACGACTCCCAGTCCCAGCCGTCGCCTTCCTCCAAGTGGCAGGCCCACAAGCATGCGATCCTGAATATCGTGTGGCTTCCTCCGGACTATGGGGATGCTATAGCTTGTGTTTGTGCTGATGGGACGCTATCTTTGTGGGAGGAGGTCAGTGAAGATGATCAACTTCCAACCTGGAGGAAATGTAAAGTATTTGAGAGTGGCAATTCTCACATACTACACGTACAGTTTGGATTACAACTGTCTAGTCTAAAAATGGTTACTGCATACTCAGATGGCCAAGTGAAGGTTTATGAGCTCTTGGACTCGTTGGAATTAGACAAGTGGCAGCTTCAGGCGGAGTTCCAGAACATTACAGATCCTGTTTCCCGATCTGGGAAGCCAGCATGTACTTCTGCATCAATTGCATGGAGTCCAAGAAGAGGTGAAAGTCAGCAGGCTAGTTTTGCTATTGGTTTCAATTCAGACTCTCCAAATTTCAACTCTTGTAAGATTTGGGAGTTCGAAGAAGCTCACCAGCGTTGGCTCCCCCTTGTTGAGCTTGGCTCACCTCAGGATAAGGGGGATATAGTGCATGCTGTAGCATGGGCTCCTAACATCGGCAGACCATATGAGATCATAGCAGTTGCGACATGTAAAGGAATCGCAATCTGGCATATAGGCTTAAGCGCTGAATCTGACGGCAGCCTGTCAACTGAGAATGTGGCTGTACTTTCTGGCCATGATGGGGAGGTCCTGCAACTGGAATGGGACATGGGCGGTATGACACTCGCATCGACCGGAGGTGATGGCATGGTTAAGCTATGGCAGGCTAACCTGAATGGAGTTTGGCATGAACAAGCTGTGCTTGACTGCAATGTGTCTCACTAG
Protein Sequence
  • >LOC_Os01g43250.1 protein MAERQVAELGAGAACVGWNHCGRRLAAGAVDGFVSVYDSQSQPSPSSKWQAHKHAILNIVWLPPDYGDAIACVCADGTLSLWEEVSEDDQLPTWRKCKVFESGNSHILHVQFGLQLSSLKMVTAYSDGQVKVYELLDSLELDKWQLQAEFQNITDPVSRSGKPACTSASIAWSPRRGESQQASFAIGFNSDSPNFNSCKIWEFEEAHQRWLPLVELGSPQDKGDIVHAVAWAPNIGRPYEIIAVATCKGIAIWHIGLSAESDGSLSTENVAVLSGHDGEVLQLEWDMGGMTLASTGGDGMVKLWQANLNGVWHEQAVLDCNVSH*