Gene Details:
- MSU gene ID: LOC_Os01g55974
- RAPdb gene ID: Os01g0765000
- Gene Symbol: ST2 OsDCD ALR
- Genome: MSU7 , IRGSP-1.0
- Species: Oryza sativa
Functional Descriptions:
- Subcellular localization assay showed that the ST2 protein was located in mitochondria.
- The ST2 gene was finely confined to a 27-kb region on chromosome 1 by the map-based cloning strategy and a 5-bp deletion in Os01g0765000 was identified by sequence analysis.
- The expression of nuclear and plastid genome replication genes was down-regulated under decreased dTTP, and together with decreased cell proliferation and defective chloroplast development in the ALR mutant this demonstrated the molecular and physiological roles of DCD-mediated dNTP pool balance in plant development.
- ALR encoding dCMP deaminase is critical for DNA damage repair, cell cycle progression and plant development in rice.
- Map-based cloning and complementation revealed that ALR encodes a DCD protein.
Function-related keywords:
- mitochondria , map-based-cloning , chloroplast , development , plant-development , cell-cycle , chloroplast-development , cell-proliferation
Literature:
- STRIPE2 encodes a putative dCMP deaminase that plays an important role in chloroplast development in rice . DOI: 10.1016/j.jgg.2014.05.008 ; PMID: 25438698
- ALR encoding dCMP deaminase is critical for DNA damage repair, cell cycle progression and plant development in rice . DOI: 10.1093/jxb/erx380 ; PMID: 29186482
Related News:
Gene Resources:
Sequences:
cDNA Sequence
- >LOC_Os01g55974.2 cDNA AGTCTCCCTCCGGACCCAAGCCCCGCTCGAGCGAGCGCGATGGCCTCGGCGAGGGACCTCGCCGTAGCGTCCATCTCCGCCGCCGTGGGCGCCGCAGCCGCCGCGGCCGCGCTGCGCTTCCTGTCATCCTACGGGGCCAGCTCTGCCAAGCAGCGGAGCCCGCCCACGCCGTGCGCCGAGCACCTCGCGGTCAACGGATGCGCCGCCGAGCGCCCGCCGGTGCAGTCCCCCTTCGATCCCGCCAAGAGGGAAGGGTATATCTCCTGGGACGACTACTTCATGGCGATCGCGTTCCTTTCGGCCAAGCGGTCCAAGGATCCTAATCGGCAGGTTGGAGCATGCTTGGTTAGCCAAGAGGGGATAATCCTAGGAATAGGGTATAATGGATTTCCTAGAGGTTGTTCTGACAATAAGCTACCCTGGGCAAAGAAATCTGCCAAGGGAGATCCATTGGAGACAAAATACCCCTATGTTGTTCATGCTGAGGTTAATGCTATTTTAAATACAAACCATGCTTCAGCGGCTGGACAGAAATTATATGTTACCATGTTCCCCTGCAATGAGTGTGCTAAGATTATTATCCAGTCAGGTGTATCTGAAGTCATATATTTTGTAGAGAAAAGGATTGACAACTCTGATTATGTTTACGTAGCCTCGCACAAGTTGTTATCAATGGCTGGTGTAAAGGTTAGGAAACACCAACCACAGATGTCACAAATACCAATCAAGTTTCAGGAGCCTCGAAACGATTTCTGTTGATCATGGCATCAAAGAACAAATGCTTGTCAGTCATTCAACGTCATCGATTGCCATATCCTCCGGGGTGCTGTTGACCGTCTTGTTGTAAACTTGTAATCCGTGAGACTACTAGATCATCAAAACAAATTATGGCTGTGTTTAGTTCAGCGCAAAATTTAGATTTTGGTTGAAATTGAAGATGATGTGACTGAAAAGTTGTGTATATGACAGGTTGATGTGATAGAAAAGGACTGAAGTTTGGATTCAAACTTTAGATCTAAACACAGCGTATATATATACTTCTTCCAACAACATTA
- >LOC_Os01g55974.3 cDNA AGTCTCCCTCCGGACCCAAGCCCCGCTCGAGCGAGCGCGATGGCCTCGGCGAGGGACCTCGCCGTAGCGTCCATCTCCGCCGCCGTGGGCGCCGCAGCCGCCGCGGCCGCGCTGCGCTTCCTGTCATCCTACGGGGCCAGCTCTGCCAAGCAGCGGAGCCCGCCCACGCCGTGCGCCGAGCACCTCGCGGTCAACGGATGCGCCGCCGAGCGCCCGCCGGTGCAGTCCCCCTTCGATCCCGCCAAGAGGGAAGGGTATATCTCCTGGGACGACTACTTCATGGCGATCGCGTTCCTTTCGGCCAAGCGGTCCAAGGATCCTAATCGGCAGGTTGGAGCATGCTTGGTTAGCCAAGAGGGGATAATCCTAGGAATAGGGTATAATGGATTTCCTAGAGGTTGTTCTGACAATAAGCTACCCTGGGCAAAGAAATCTGCCAAGGGAGATCCATTGGAGACAAAATACCCCTATGTTGTTCATGCTGAGGTTAATGCTATTTTAAATACAAACCATGCTTCAGCGGCTGGACAGAAATTATATGTTACCATGTTCCCCTGCAATGAGTGTGCTAAGATTATTATCCAGTCAGGTGTATCTGAAGTCATATATTTTGTAGAGAAAAGGATTGACAACTCTGATTATGTTTACGTAGCCTCGCACAAGTTGTTATCAATGGCTGGTGTAAAGGTTAGGAAACACCAACCACAGATGTCACAAATACCAATCAAGTTTCAGGAGCCTCGAAACGATTTCTGTTGATCATGGCATCAAAGAACAAATGCTTGTCAGTCATTCAACGTCATCGATTGCCATATCCTCCGGGGTGCTGTTGACCGTCTTGTTGTAAACTTGTAATCCGTGAGACTACTAGATCATCAAAACAAATTATGGCTGTGTTTAGTTCAGCGCAAAATTTAGATTTTGGTTGAAATTGAAGATGATGTGACTGAAAAGTTGTGTATATGACAGGTTGATGTGATAGAAAAGGACTGAAGTTTGGATTCAAACTTTAGATCTAAACACAGCGTATATATATACTTCTTCCAACAACATTA
- >LOC_Os01g55974.1 cDNA AGTCTCCCTCCGGACCCAAGCCCCGCTCGAGCGAGCGCGATGGCCTCGGCGAGGGACCTCGCCGTAGCGTCCATCTCCGCCGCCGTGGGCGCCGCAGCCGCCGCGGCCGCGCTGCGCTTCCTGTCATCCTACGGGGCCAGCTCTGCCAAGCAGCGGAGCCCGCCCACGCCGTGCGCCGAGCACCTCGCGGTCAACGGATGCGCCGCCGAGCGCCCGCCGGTGCAGTCCCCCTTCGATCCCGCCAAGAGGGAAGGGTATATCTCCTGGGACGACTACTTCATGGCGATCGCGTTCCTTTCGGCCAAGCGGTCCAAGGATCCTAATCGGCAGGTTGGAGCATGCTTGGTTAGCCAAGAGGGGATAATCCTAGGAATAGGGTATAATGGATTTCCTAGAGGTTGTTCTGACAATAAGCTACCCTGGGCAAAGAAATCTGCCAAGGGAGATCCATTGGAGACAAAATACCCCTATGTTGTTCATGCTGAGGTTAATGCTATTTTAAATACAAACCATGCTTCAGCGGCTGGACAGAAATTATATGTTACCATGTTCCCCTGCAATGAGTGTGCTAAGATTATTATCCAGTCAGGTGTATCTGAAGTCATATATTTTGTAGAGAAAAGGATTGACAACTCTGATTATGTTTACGTAGCCTCGCACAAGTTGTTATCAATGGCTGGTGTAAAGGTTAGGAAACACCAACCACAGATGTCACAAATACCAATCAAGTTTCAGGAGCCTCGAAACGATTTCTGTTGATCATGGCATCAAAGAACAAATGCTTGTCAGTCATTCAACGTCATCGATTGCCATATCCTCCGGGGTGCTGTTGACCGTCTTGTTGTAAACTTGTAATCCGTGAGACTACTAGATCATCAAAACAAATTATGGCTGTGTTTAGTTCAGCGCAAAATTTAGATTTTGGTTGAAATTGAAGATGATGTGACTGAAAAGTTGTGTATATGACAGGTTGATGTGATAGAAAAGGACTGAAGTTTGGATTCAAACTTTAGATCTAAACACAGCGTATATATATACTTCTTCCAACAACATTA
CDS Sequence
- >LOC_Os01g55974.2 CDS ATGGCCTCGGCGAGGGACCTCGCCGTAGCGTCCATCTCCGCCGCCGTGGGCGCCGCAGCCGCCGCGGCCGCGCTGCGCTTCCTGTCATCCTACGGGGCCAGCTCTGCCAAGCAGCGGAGCCCGCCCACGCCGTGCGCCGAGCACCTCGCGGTCAACGGATGCGCCGCCGAGCGCCCGCCGGTGCAGTCCCCCTTCGATCCCGCCAAGAGGGAAGGGTATATCTCCTGGGACGACTACTTCATGGCGATCGCGTTCCTTTCGGCCAAGCGGTCCAAGGATCCTAATCGGCAGGTTGGAGCATGCTTGGTTAGCCAAGAGGGGATAATCCTAGGAATAGGGTATAATGGATTTCCTAGAGGTTGTTCTGACAATAAGCTACCCTGGGCAAAGAAATCTGCCAAGGGAGATCCATTGGAGACAAAATACCCCTATGTTGTTCATGCTGAGGTTAATGCTATTTTAAATACAAACCATGCTTCAGCGGCTGGACAGAAATTATATGTTACCATGTTCCCCTGCAATGAGTGTGCTAAGATTATTATCCAGTCAGGTGTATCTGAAGTCATATATTTTGTAGAGAAAAGGATTGACAACTCTGATTATGTTTACGTAGCCTCGCACAAGTTGTTATCAATGGCTGGTGTAAAGGTTAGGAAACACCAACCACAGATGTCACAAATACCAATCAAGTTTCAGGAGCCTCGAAACGATTTCTGTTGA
- >LOC_Os01g55974.3 CDS ATGGCCTCGGCGAGGGACCTCGCCGTAGCGTCCATCTCCGCCGCCGTGGGCGCCGCAGCCGCCGCGGCCGCGCTGCGCTTCCTGTCATCCTACGGGGCCAGCTCTGCCAAGCAGCGGAGCCCGCCCACGCCGTGCGCCGAGCACCTCGCGGTCAACGGATGCGCCGCCGAGCGCCCGCCGGTGCAGTCCCCCTTCGATCCCGCCAAGAGGGAAGGGTATATCTCCTGGGACGACTACTTCATGGCGATCGCGTTCCTTTCGGCCAAGCGGTCCAAGGATCCTAATCGGCAGGTTGGAGCATGCTTGGTTAGCCAAGAGGGGATAATCCTAGGAATAGGGTATAATGGATTTCCTAGAGGTTGTTCTGACAATAAGCTACCCTGGGCAAAGAAATCTGCCAAGGGAGATCCATTGGAGACAAAATACCCCTATGTTGTTCATGCTGAGGTTAATGCTATTTTAAATACAAACCATGCTTCAGCGGCTGGACAGAAATTATATGTTACCATGTTCCCCTGCAATGAGTGTGCTAAGATTATTATCCAGTCAGGTGTATCTGAAGTCATATATTTTGTAGAGAAAAGGATTGACAACTCTGATTATGTTTACGTAGCCTCGCACAAGTTGTTATCAATGGCTGGTGTAAAGGTTAGGAAACACCAACCACAGATGTCACAAATACCAATCAAGTTTCAGGAGCCTCGAAACGATTTCTGTTGA
- >LOC_Os01g55974.1 CDS ATGGCCTCGGCGAGGGACCTCGCCGTAGCGTCCATCTCCGCCGCCGTGGGCGCCGCAGCCGCCGCGGCCGCGCTGCGCTTCCTGTCATCCTACGGGGCCAGCTCTGCCAAGCAGCGGAGCCCGCCCACGCCGTGCGCCGAGCACCTCGCGGTCAACGGATGCGCCGCCGAGCGCCCGCCGGTGCAGTCCCCCTTCGATCCCGCCAAGAGGGAAGGGTATATCTCCTGGGACGACTACTTCATGGCGATCGCGTTCCTTTCGGCCAAGCGGTCCAAGGATCCTAATCGGCAGGTTGGAGCATGCTTGGTTAGCCAAGAGGGGATAATCCTAGGAATAGGGTATAATGGATTTCCTAGAGGTTGTTCTGACAATAAGCTACCCTGGGCAAAGAAATCTGCCAAGGGAGATCCATTGGAGACAAAATACCCCTATGTTGTTCATGCTGAGGTTAATGCTATTTTAAATACAAACCATGCTTCAGCGGCTGGACAGAAATTATATGTTACCATGTTCCCCTGCAATGAGTGTGCTAAGATTATTATCCAGTCAGGTGTATCTGAAGTCATATATTTTGTAGAGAAAAGGATTGACAACTCTGATTATGTTTACGTAGCCTCGCACAAGTTGTTATCAATGGCTGGTGTAAAGGTTAGGAAACACCAACCACAGATGTCACAAATACCAATCAAGTTTCAGGAGCCTCGAAACGATTTCTGTTGA
Protein Sequence
- >LOC_Os01g55974.2 protein MASARDLAVASISAAVGAAAAAAALRFLSSYGASSAKQRSPPTPCAEHLAVNGCAAERPPVQSPFDPAKREGYISWDDYFMAIAFLSAKRSKDPNRQVGACLVSQEGIILGIGYNGFPRGCSDNKLPWAKKSAKGDPLETKYPYVVHAEVNAILNTNHASAAGQKLYVTMFPCNECAKIIIQSGVSEVIYFVEKRIDNSDYVYVASHKLLSMAGVKVRKHQPQMSQIPIKFQEPRNDFC*
- >LOC_Os01g55974.3 protein MASARDLAVASISAAVGAAAAAAALRFLSSYGASSAKQRSPPTPCAEHLAVNGCAAERPPVQSPFDPAKREGYISWDDYFMAIAFLSAKRSKDPNRQVGACLVSQEGIILGIGYNGFPRGCSDNKLPWAKKSAKGDPLETKYPYVVHAEVNAILNTNHASAAGQKLYVTMFPCNECAKIIIQSGVSEVIYFVEKRIDNSDYVYVASHKLLSMAGVKVRKHQPQMSQIPIKFQEPRNDFC*
- >LOC_Os01g55974.1 protein MASARDLAVASISAAVGAAAAAAALRFLSSYGASSAKQRSPPTPCAEHLAVNGCAAERPPVQSPFDPAKREGYISWDDYFMAIAFLSAKRSKDPNRQVGACLVSQEGIILGIGYNGFPRGCSDNKLPWAKKSAKGDPLETKYPYVVHAEVNAILNTNHASAAGQKLYVTMFPCNECAKIIIQSGVSEVIYFVEKRIDNSDYVYVASHKLLSMAGVKVRKHQPQMSQIPIKFQEPRNDFC*