Gene Details:
- MSU gene ID: LOC_Os01g62244
- RAPdb gene ID: Os01g0839700
- Gene Symbol: OsUBC11
- Genome: MSU7 , IRGSP-1.0
- Species: Oryza sativa
Functional Descriptions:
- OsUBC11 overexpression lines showed the same root phenotypes.
- These results demonstrated that OsUBC11 was involved in root development.
- Expression of the auxin synthesis regulating gene OsYUCCA4/6/7/9, the auxin transport gene OsAUX1, auxin/indole-3-acetic acid (Aux/IAA) family gene OsIAA31, auxin response factor OsARF16 and root regulator key genes, including OsWOX11, OsCRL1, OsCRL5 was significantly down-regulated in OsUBC11 overexpressing plants.
- Collectively, these results indicate that OsUBC11 modulates auxin signaling, ultimately affecting root development at the rice seedling stage.
- Ubiquitin-Conjugating Enzyme OsUBC11 Affects the Development of Roots via Auxin Pathway.
- In the present study, a T-DNA insertional mutant named R164, which exhibited a significant decrease in the length of primary and lateral roots, was used as the experimental material to explore the potential function of OsUBC11.
- Biochemical experiments showed that OsUBC11 is a lysine-48-linked ubiquitin chain-forming conjugase.
- Application of exogenous NAA restored the length of lateral and primary roots in R164 and OsUBC11 overexpression lines.
Function-related keywords:
- root , development , auxin , seedling , root-development , auxin-response , auxin-transport , lateral-root , Ubiquitin , primary-root
Literature:
- Ubiquitin-Conjugating Enzyme OsUBC11 Affects the Development of Roots via Auxin Pathway . DOI: 10.1186/s12284-023-00626-3 ; PMID: 36808375
Related News:
Gene Resources:
Sequences:
cDNA Sequence
- >LOC_Os01g62244.3 cDNA CTTATTTCAGATATAGAGCCCTTTTCATGTGCTTGCTGATTTGTCATCTATTCATCTTTGGTGTTTGGGCTGTTAGCTTGATGATCTAAACTGTTCTTTCTCAAACTGCCTTGTGACAATGACATTTATTTTCAGTGATGGAGGTTACTTTAATGCAATAATGAGCTTTCCACAGAATTATCCTAACAGTCCTCCAACTGTCAGATTTACCTCAGAAATGTGGCATCCAAATGTTTATCCGGATGGACGTGTATGCATTTCTATTCTTCATCCGCCTGGTGATGATCCCAATGGTTATGAGCTTGCGAGTGAGCGTTGGACACCAGTGCATACGGTTGAGAGCATAGTTCTGAGCATCATTTCGATGCTTTCTGGTCCAAATGATGAATCACCAGCAAATATTGAAGCAGCTAAGGAATGGAGAGAGAAGAGGGATGACTTCAAGAAAAAGGTTAGGCGCCTTGTAAGGAAATCACAAGAAATGCTCTGAAGAAACCGGCAGTACTGGGGAAAGTTAACCATACCACGTCACATGTGCATGATTTGGCTGTCGATTTCCAAATGTCAGTTGACACTAGCAATTCACTTCTCCCCCTCTGTACTTCCCATAGTGTGCCTGGTGGTGGTCGCGGTTTCGTCTCCCAGGAAGGCTGAATAGCACTGGGACATGTTTGTCACCTATTCTAAAGCTCTGGTTGTATTTGTGTGGCTTGGGCTGTAAACGTTGAGAAACTTTGAAATACTGCCACTCATCACAATTTTCGTAACAAACGTCATATAAGCAGGCACCTGCCTGATCTGCTAGCTGTTGAACGTTGAAACACAATGTCTGCAAACTGGTTTCAGTCCGTTCTTTGTAATATGTTCTTATAAATGGAGCAATACTCGGTGCTGTACAAAAATACTTGCTGGAGTTTACTCATTCATCAGTTATAAATCTATATTGGCTTA
- >LOC_Os01g62244.1 cDNA CTTATTTCAGATATAGAGCCCTTTTCATGTGCTTGCTGATTTGTCATCTATTCATCTTTGGTGTTTGGGCTGTTAGCTTGATGATCTAAACTGTTCTTTCTCAAACTGCCTTGTGACAATGACATTTATTTTCAGTGATGGAGGTTACTTTAATGCAATAATGAGCTTTCCACAGAATTATCCTAACAGTCCTCCAACTGTCAGATTTACCTCAGAAATGTGGCATCCAAATGTTTATCCGGATGGACGTGTATGCATTTCTATTCTTCATCCGCCTGGTGATGATCCCAATGGTTATGAGCTTGCGAGTGAGCGTTGGACACCAGTGCATACGGTTGAGAGCATAGTTCTGAGCATCATTTCGATGCTTTCTGGTCCAAATGATGAATCACCAGCAAATATTGAAGCAGCTAAGGAATGGAGAGAGAAGAGGGATGACTTCAAGAAAAAGGTTAGGCGCCTTGTAAGGAAATCACAAGAAATGCTCTGAAGAAACCGGCAGTACTGGGGAAAGTTAACCATACCACGTCACATGTGCATGATTTGGCTGTCGATTTCCAAATGTCAGTTGACACTAGCAATTCACTTCTCCCCCTCTGTACTTCCCATAGTGTGCCTGGTGGTGGTCGCGGTTTCGTCTCCCAGGAAGGCTGAATAGCACTGGGACATGTTTGTCACCTATTCTAAAGCTCTGGTTGTATTTGTGTGGCTTGGGCTGTAAACGTTGAGAAACTTTGAAATACTGCCACTCATCACAATTTTCGTAACAAACGTCATATAAGCAGGCACCTGCCTGATCTGCTAGCTGTTGAACGTTGAAACACAATGTCTGCAAACTGGTTTCAGTCCGTTCTTTGTAATATGTTCTTATAAATGGAGCAATACTCGGTGCTGTACAAAAATACTTGCTGGAGTTTACTCATTCATCAGTTATAAATCTATATTGGCTTA
- >LOC_Os01g62244.2 cDNA CTTATTTCAGATATAGAGCCCTTTTCATGTGCTTGCTGATTTGTCATCTATTCATCTTTGGTGTTTGGGCTGTTAGCTTGATGATCTAAACTGTTCTTTCTCAAACTGCCTTGTGACAATGACATTTATTTTCAGTGATGGAGGTTACTTTAATGCAATAATGAGCTTTCCACAGAATTATCCTAACAGTCCTCCAACTGTCAGATTTACCTCAGAAATGTGGCATCCAAATGTTTATCCGGATGGACGTGTATGCATTTCTATTCTTCATCCGCCTGGTGATGATCCCAATGGTTATGAGCTTGCGAGTGAGCGTTGGACACCAGTGCATACGGTTGAGAGCATAGTTCTGAGCATCATTTCGATGCTTTCTGGTCCAAATGATGAATCACCAGCAAATATTGAAGCAGCTAAGGAATGGAGAGAGAAGAGGGATGACTTCAAGAAAAAGGTTAGGCGCCTTGTAAGGAAATCACAAGAAATGCTCTGAAGAAACCGGCAGTACTGGGGAAAGTTAACCATACCACGTCACATGTGCATGATTTGGCTGTCGATTTCCAAATGTCAGTTGACACTAGCAATTCACTTCTCCCCCTCTGTACTTCCCATAGTGTGCCTGGTGGTGGTCGCGGTTTCGTCTCCCAGGAAGGCTGAATAGCACTGGGACATGTTTGTCACCTATTCTAAAGCTCTGGTTGTATTTGTGTGGCTTGGGCTGTAAACGTTGAGAAACTTTGAAATACTGCCACTCATCACAATTTTCGTAACAAACGTCATATAAGCAGGCACCTGCCTGATCTGCTAGCTGTTGAACGTTGAAACACAATGTCTGCAAACTGGTTTCAGTCCGTTCTTTGTAATATGTTCTTATAAATGGAGCAATACTCGGTGCTGTACAAAAATACTTGCTGGAGTTTACTCATTCATCAGTTATAAATCTATATTGGCTTA
CDS Sequence
- >LOC_Os01g62244.3 CDS ATGACATTTATTTTCAGTGATGGAGGTTACTTTAATGCAATAATGAGCTTTCCACAGAATTATCCTAACAGTCCTCCAACTGTCAGATTTACCTCAGAAATGTGGCATCCAAATGTTTATCCGGATGGACGTGTATGCATTTCTATTCTTCATCCGCCTGGTGATGATCCCAATGGTTATGAGCTTGCGAGTGAGCGTTGGACACCAGTGCATACGGTTGAGAGCATAGTTCTGAGCATCATTTCGATGCTTTCTGGTCCAAATGATGAATCACCAGCAAATATTGAAGCAGCTAAGGAATGGAGAGAGAAGAGGGATGACTTCAAGAAAAAGGTTAGGCGCCTTGTAAGGAAATCACAAGAAATGCTCTGA
- >LOC_Os01g62244.1 CDS ATGACATTTATTTTCAGTGATGGAGGTTACTTTAATGCAATAATGAGCTTTCCACAGAATTATCCTAACAGTCCTCCAACTGTCAGATTTACCTCAGAAATGTGGCATCCAAATGTTTATCCGGATGGACGTGTATGCATTTCTATTCTTCATCCGCCTGGTGATGATCCCAATGGTTATGAGCTTGCGAGTGAGCGTTGGACACCAGTGCATACGGTTGAGAGCATAGTTCTGAGCATCATTTCGATGCTTTCTGGTCCAAATGATGAATCACCAGCAAATATTGAAGCAGCTAAGGAATGGAGAGAGAAGAGGGATGACTTCAAGAAAAAGGTTAGGCGCCTTGTAAGGAAATCACAAGAAATGCTCTGA
- >LOC_Os01g62244.2 CDS ATGACATTTATTTTCAGTGATGGAGGTTACTTTAATGCAATAATGAGCTTTCCACAGAATTATCCTAACAGTCCTCCAACTGTCAGATTTACCTCAGAAATGTGGCATCCAAATGTTTATCCGGATGGACGTGTATGCATTTCTATTCTTCATCCGCCTGGTGATGATCCCAATGGTTATGAGCTTGCGAGTGAGCGTTGGACACCAGTGCATACGGTTGAGAGCATAGTTCTGAGCATCATTTCGATGCTTTCTGGTCCAAATGATGAATCACCAGCAAATATTGAAGCAGCTAAGGAATGGAGAGAGAAGAGGGATGACTTCAAGAAAAAGGTTAGGCGCCTTGTAAGGAAATCACAAGAAATGCTCTGA
Protein Sequence
- >LOC_Os01g62244.3 protein MTFIFSDGGYFNAIMSFPQNYPNSPPTVRFTSEMWHPNVYPDGRVCISILHPPGDDPNGYELASERWTPVHTVESIVLSIISMLSGPNDESPANIEAAKEWREKRDDFKKKVRRLVRKSQEML*
- >LOC_Os01g62244.1 protein MTFIFSDGGYFNAIMSFPQNYPNSPPTVRFTSEMWHPNVYPDGRVCISILHPPGDDPNGYELASERWTPVHTVESIVLSIISMLSGPNDESPANIEAAKEWREKRDDFKKKVRRLVRKSQEML*
- >LOC_Os01g62244.2 protein MTFIFSDGGYFNAIMSFPQNYPNSPPTVRFTSEMWHPNVYPDGRVCISILHPPGDDPNGYELASERWTPVHTVESIVLSIISMLSGPNDESPANIEAAKEWREKRDDFKKKVRRLVRKSQEML*