Gene Details:
- MSU gene ID: LOC_Os02g57270
- RAPdb gene ID: Os02g0817800
- Gene Symbol: RTBP1
- Genome: MSU7 , IRGSP-1.0
- Species: Oryza sativa
Functional Descriptions:
- RTBP1 plants displayed progressive and severe developmental abnormalities in both germination and postgermination growth of vegetative organs over four generations (G1 to G4).
- Furthermore, 35S:anti-RTBP1 plants expressing lower levels of RTBP1 mRNA exhibited developmental phenotypes intermediate between the wild type and mutants in all aspects examined, including telomere length, vegetative and reproductive growth, and degree of genomic anomaly.
- These results suggest that RTBP1 plays dual roles in rice (Oryza sativa), as both a negative regulator of telomere length and one of positive and functional components for proper architecture of telomeres.
Function-related keywords:
Literature:
- Solution structure of the DNA binding domain of rice telomere binding protein RTBP1 . DOI: 10.1021/bi801270g ; PMID: 19152316
- Suppression of RICE TELOMERE BINDING PROTEIN 1 results in severe and gradual developmental defects accompanied by genome instability in rice . DOI: 10.1105/tpc.107.051953 ; PMID: 17586654
Related News:
Gene Resources:
- NCBI ID: AF242298
- UniProt accessions:
Sequences:
cDNA Sequence
- >LOC_Os02g57270.1 cDNA ACGGGGTTTTTCTCCTCCAATCCTTTCCCCTCTCCCTCTCCTCCTCCTCCTCCTCCCTGCGCCTTCCACTTGCAGCGATTCCTCCTCCCCGCCCGCTCTTCTCGAACCTTCTGGAACCTTCCCCCATCCCCCACAAGCAGAAGCAGCAGATGGGCATCGTCGTCGTCGTCGTCAACCAATCCTAGGCGACGAGCGCTGCGGCGGCGCGCGCCATCTGCTCCCCTCCGCCGTGCTCCGGTGCTCCCCGATCTGCGCCTCCCGCTCCGGTTGGTCGGCTGTCGGAACACGCAGCTGCAAAACCCTAGCCGAGCTGCGGCGATCTCAACGCTGGCGGCGAGGCCCTCCTCTTCGTCGGCGTCGACGGAAAAATATGGCGCATGTTTTATTTACTTCCCCTTGCTGTCACTGAACACATTTCCTAAAGTCAAGGACAAGACATGGTGTTGCAGAAGAGGTTGGACTATGGATCCCATGGCCATCGTGCTCCCATTAAGCCACGTGTCGCAACATTGGCGCCGGTTAAACGCTCCACAAGAATAAGGAAAAAGCAGATGTATGCACTTGATTTGCTTGCGACAGCTGCAGAAAAATTGTTGGCTGATCAAGACAATTTATCTAGTGGACCTAACATAAATGAAACACCAGAAGGTTATGTTACAAGCATGAAACCAGTTAAAGCAGAACAGTTTGATGAAGCGTTTCCGTTGAGAAGCGTGGCTGTGAAAAAAGATGACTGCAAAGGTTGTACAGTAGGCTGTGCAGGCATCTGTGGCTTTCTCAGACAAGCTAATATGTGCTTGGCTGAAAACTCGTCGACTCAAAATCTAGCTGATTCAGTACTAGAGTCACTAACAGCAAAGCCTGATGTGTTGGCTAAGGACTCATTTGTTAGCAGTAAAAAATCATGTCGATTGGGTTTTGGTCTTGGCACAATTCCGGAGTATGGATCTGTTGGAGTATGCCAACCTTGGTCCACAAGATCAGCAGAGGTTAAACAAGTGCATCGGGCGAGACCAACAGCAATCAGAAGTCAAGAAGATAGTGATGCTGCAGCTCTATGTGCTTTGGTCGAGACCATGGATTTGGACACCAAACCTCTTGCTGAGGCTAGCTCTGGTAGTAACTCAGGAGTGCACATCTGCGGCCCTGACAGGGGGCATAACTCCCATCCCTCGTGTTTGGCTAAAGTGCAGCATGCTGCAGACAGAGATGATGACGAAAATTCTTCTGGGTGTGTACATCCAAGCACCTCAGGAAATAACCGTGGTTATATTCCACATTATATAGGTGACCGCAGGATAAGGAGATTGTTTGCCTCCAGGTTAAGGAAGGCAGCTCGCAACAGGATATGTGGAGAGATGTCTTGTAAAGGTAACAAGCTGAGTTTGTGTGAAAAGAAGATGCCCACTACGCGCCGAAGAGTGCAACAAACAACTTTGAAGAGGAAAAGACTTGCTCAACTTTACTCCGAAAAATCATCTGATGAAGTCAAGTTAACCATCAAATCTTTCAACATCCCTGAACTACTAATTGAGATCCCTGAAAATGCAACAGTTGGTTCATTGAAGAAAACTGTGTCAGATGCTGTTACTACTATAATTGAACGCGGTCTCCGTGTCGGTATACTTCTTCAAGGAAAAAATATTCAAAATGACAACAAGACGCTTCGTCAGGCTGGGATTTGCCGTGGTAAAAAACTAAATGACATAGGCTTTACTCTGGAATGTGAAGCTGGGCAAGATTCTCACCCTGGTGTAATAGTGCCAGAAGAAATGGATTTTGTTGGTGCATCTGTTGTGGACAAGTCTGCTACGGTGAAATGCGAAGAACCTGCTGAGAACCAGCAGCTTATGCAAGATTTTCCAGGCTGCAGCTTGAGTGATCCTGGTTCTGTTGATTATCCCGTGGAATGGAGCACACAAGAAACATCAGCAAGCTCCCAAGCCATCGTCCCTTTTGCAGATCCAAACTCACTGGCGCTGGCCAATGTGCCGCTTTCTAGGTCAAAGCGACCAGATTTTGGGCAAAGACGGATAAGGAGGCCTTTCACTGTTGCTGAAGTGGAGTTGCTGGTGGAAGCCGTCGAGCACCTTGGAACAGGAAGGTGGAGGGACGTCAAATTCCGCGCATTTGAAAATGTTCATCATAGGACCTATGTTGATCTGAAGGACAAGTGGAAGACCCTGGTGCACACGGCGAGCATAGCGCCGCAGCAAAGAAGGGGAGCTCCAGTTCCACAGGAACTCCTGGACCGTGTGCTCGCCGCACAGGCCTACTGGTCGGAGCAGCAGGCAAAGCTCCATGGCGATCCCCCTGTTCCTGAAATCTGCCCTACCTGATCCTGATGATGATTGATGGAGAAGGCAAGAATGGCCCTCGTGTACAAATCGGTGTAAAAATTGTTCAGAAGGGATTGGTTGGTTGACGTTTGATTGAAATTTGTCGACAGTTGAAAACTCACAACTTGGTCCTTCCTACTGTTGGTTCGTTAACAGGAGGAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGCTTATTTGTAAATTTCAGCAGAGTTTACTGTCTTTGCAAAAATGCAAGTCGTTTTGGACAAG
- >LOC_Os02g57270.2 cDNA ACGGGGTTTTTCTCCTCCAATCCTTTCCCCTCTCCCTCTCCTCCTCCTCCTCCTCCCTGCGCCTTCCACTTGCAGCGATTCCTCCTCCCCGCCCGCTCTTCTCGAACCTTCTGGAACCTTCCCCCATCCCCCACAAGCAGAAGCAGCAGATGGGCATCGTCGTCGTCGTCGTCAACCAATCCTAGGCGACGAGCGCTGCGGCGGCGCGCGCCATCTGCTCCCCTCCGCCGTGCTCCGGTGCTCCCCGATCTGCGCCTCCCGCTCCGGTTGGTCGGCTGTCGGAACACGCAGCTGCAAAACCCTAGCCGAGCTGCGGCGATCTCAACGCTGGCGGCGAGGCCCTCCTCTTCGTCGGCGTCGACGGAAAAATATGGCGCATGTTTTATTTACTTCCCCTTGCTGTCACTGAACACATTTCCTAAAGTCAAGGACAAGACATGGTGTTGCAGAAGAGGTTGGACTATGGATCCCATGGCCATCGTGCTCCCATTAAGCCACGTGTCGCAACATTGGCGCCGGTTAAACGCTCCACAAGAATAAGGAAAAAGCAGATGTATGCACTTGATTTGCTTGCGACAGCTGCAGAAAAATTGTTGGCTGATCAAGACAATTTATCTAGTGGACCTAACATAAATGAAACACCAGAAGGTTATGTTACAAGCATGAAACCAGTTAAAGCAGAACAGTTTGATGAAGCGTTTCCGTTGAGAAGCGTGGCTGTGAAAAAAGATGACTGCAAAGGTTGTACAGTAGGCTGTGCAGGCATCTGTGGCTTTCTCAGACAAGCTAATATGTGCTTGGCTGAAAACTCGTCGACTCAAAATCTAGCTGATTCAGTACTAGAGTCACTAACAGCAAAGCCTGATGTGTTGGCTAAGGACTCATTTGTTAGCAGTAAAAAATCATGTCGATTGGGTTTTGGTCTTGGCACAATTCCGGAGTATGGATCTGTTGGAGTATGCCAACCTTGGTCCACAAGATCAGCAGAGGTTAAACAAGTGCATCGGGCGAGACCAACAGCAATCAGAAGTCAAGAAGATAGTGATGCTGCAGCTCTATGTGCTTTGGTCGAGACCATGGATTTGGACACCAAACCTCTTGCTGAGGCTAGCTCTGGTAGTAACTCAGGAGTGCACATCTGCGGCCCTGACAGGGGGCATAACTCCCATCCCTCGTGTTTGGCTAAAGTGCAGCATGCTGCAGACAGAGATGATGACGAAAATTCTTCTGGGTGTGTACATCCAAGCACCTCAGGAAATAACCGTGGTTATATTCCACATTATATAGGTGACCGCAGGATAAGGAGATTGTTTGCCTCCAGGTTAAGGAAGGCAGCTCGCAACAGGATATGTGGAGAGATGTCTTGTAAAGGTAACAAGCTGAGTTTGTGTGAAAAGAAGATGCCCACTACGCGCCGAAGAGTGCAACAAACAACTTTGAAGAGGAAAAGACTTGCTCAACTTTACTCCGAAAAATCATCTGATGAAGTCAAGTTAACCATCAAATCTTTCAACATCCCTGAACTACTAATTGAGATCCCTGAAAATGCAACAGTTGGTTCATTGAAGAAAACTGTGTCAGATGCTGTTACTACTATAATTGAACGCGGTCTCCGTGTCGGTATACTTCTTCAAGGAAAAAATATTCAAAATGACAACAAGACGCTTCGTCAGGCTGGGATTTGCCGTGGTAAAAAACTAAATGACATAGGCTTTACTCTGGAATGTGAAGCTGGGCAAGATTCTCACCCTGGTGTAATAGTGCCAGAAGAAATGGATTTTGTTGGTGCATCTGTTGTGGACAAGTCTGCTACGGTGAAATGCGAAGAACCTGCTGAGAACCAGCAGCTTATGCAAGATTTTCCAGGCTGCAGCTTGAGTGATCCTGGTTCTGTTGATTATCCCGTGGAATGGAGCACACAAGAAACATCAGCAAGCTCCCAAGCCATCGTCCCTTTTGCAGATCCAAACTCACTGGCGCTGGCCAATGTGCCGCTTTCTAGGTCAAAGCGACCAGATTTTGGGCAAAGACGGATAAGGAGGCCTTTCACTGTTGCTGAAGTGGAGTTGCTGGTGGAAGCCGTCGAGCACCTTGGAACAGGAAGGTGGAGGGACGTCAAATTCCGCGCATTTGAAAATGTTCATCATAGGACCTATGTTGATCTGAAGGACAAGTGGAAGACCCTGGTGCACACGGCGAGCATAGCGCCGCAGCAAAGAAGGGGAGCTCCAGTTCCACAGGAACTCCTGGACCGTGTGCTCGCCGCACAGGCCTACTGGTCGGAGCAGCAGGCAAAGCTCCATGGCGATCCCCCTGTTCCTGAAATCTGCCCTACCTGATCCTGATGATGATTGATGGAGAAGGCAAGAATGGCCCTCGTGTACAAATCGGTGTAAAAATTGTTCAGAAGGGATTGGTTGGTTGACGTTTGATTGAAATTTGTCGACAGTTGAAAACTCACAACTTGGTCCTTCCTACTGTTGGTTCGTTAACAGGAGGAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGCTTATTTGTAAATTTCAGCAGAGTTTACTGTCTTTGCAAAAATGCAAGTCGTTTTGGACAAG
CDS Sequence
- >LOC_Os02g57270.1 CDS ATGGTGTTGCAGAAGAGGTTGGACTATGGATCCCATGGCCATCGTGCTCCCATTAAGCCACGTGTCGCAACATTGGCGCCGGTTAAACGCTCCACAAGAATAAGGAAAAAGCAGATGTATGCACTTGATTTGCTTGCGACAGCTGCAGAAAAATTGTTGGCTGATCAAGACAATTTATCTAGTGGACCTAACATAAATGAAACACCAGAAGGTTATGTTACAAGCATGAAACCAGTTAAAGCAGAACAGTTTGATGAAGCGTTTCCGTTGAGAAGCGTGGCTGTGAAAAAAGATGACTGCAAAGGTTGTACAGTAGGCTGTGCAGGCATCTGTGGCTTTCTCAGACAAGCTAATATGTGCTTGGCTGAAAACTCGTCGACTCAAAATCTAGCTGATTCAGTACTAGAGTCACTAACAGCAAAGCCTGATGTGTTGGCTAAGGACTCATTTGTTAGCAGTAAAAAATCATGTCGATTGGGTTTTGGTCTTGGCACAATTCCGGAGTATGGATCTGTTGGAGTATGCCAACCTTGGTCCACAAGATCAGCAGAGGTTAAACAAGTGCATCGGGCGAGACCAACAGCAATCAGAAGTCAAGAAGATAGTGATGCTGCAGCTCTATGTGCTTTGGTCGAGACCATGGATTTGGACACCAAACCTCTTGCTGAGGCTAGCTCTGGTAGTAACTCAGGAGTGCACATCTGCGGCCCTGACAGGGGGCATAACTCCCATCCCTCGTGTTTGGCTAAAGTGCAGCATGCTGCAGACAGAGATGATGACGAAAATTCTTCTGGGTGTGTACATCCAAGCACCTCAGGAAATAACCGTGGTTATATTCCACATTATATAGGTGACCGCAGGATAAGGAGATTGTTTGCCTCCAGGTTAAGGAAGGCAGCTCGCAACAGGATATGTGGAGAGATGTCTTGTAAAGGTAACAAGCTGAGTTTGTGTGAAAAGAAGATGCCCACTACGCGCCGAAGAGTGCAACAAACAACTTTGAAGAGGAAAAGACTTGCTCAACTTTACTCCGAAAAATCATCTGATGAAGTCAAGTTAACCATCAAATCTTTCAACATCCCTGAACTACTAATTGAGATCCCTGAAAATGCAACAGTTGGTTCATTGAAGAAAACTGTGTCAGATGCTGTTACTACTATAATTGAACGCGGTCTCCGTGTCGGTATACTTCTTCAAGGAAAAAATATTCAAAATGACAACAAGACGCTTCGTCAGGCTGGGATTTGCCGTGGTAAAAAACTAAATGACATAGGCTTTACTCTGGAATGTGAAGCTGGGCAAGATTCTCACCCTGGTGTAATAGTGCCAGAAGAAATGGATTTTGTTGGTGCATCTGTTGTGGACAAGTCTGCTACGGTGAAATGCGAAGAACCTGCTGAGAACCAGCAGCTTATGCAAGATTTTCCAGGCTGCAGCTTGAGTGATCCTGGTTCTGTTGATTATCCCGTGGAATGGAGCACACAAGAAACATCAGCAAGCTCCCAAGCCATCGTCCCTTTTGCAGATCCAAACTCACTGGCGCTGGCCAATGTGCCGCTTTCTAGGTCAAAGCGACCAGATTTTGGGCAAAGACGGATAAGGAGGCCTTTCACTGTTGCTGAAGTGGAGTTGCTGGTGGAAGCCGTCGAGCACCTTGGAACAGGAAGGTGGAGGGACGTCAAATTCCGCGCATTTGAAAATGTTCATCATAGGACCTATGTTGATCTGAAGGACAAGTGGAAGACCCTGGTGCACACGGCGAGCATAGCGCCGCAGCAAAGAAGGGGAGCTCCAGTTCCACAGGAACTCCTGGACCGTGTGCTCGCCGCACAGGCCTACTGGTCGGAGCAGCAGGCAAAGCTCCATGGCGATCCCCCTGTTCCTGAAATCTGCCCTACCTGA
- >LOC_Os02g57270.2 CDS ATGGTGTTGCAGAAGAGGTTGGACTATGGATCCCATGGCCATCGTGCTCCCATTAAGCCACGTGTCGCAACATTGGCGCCGGTTAAACGCTCCACAAGAATAAGGAAAAAGCAGATGTATGCACTTGATTTGCTTGCGACAGCTGCAGAAAAATTGTTGGCTGATCAAGACAATTTATCTAGTGGACCTAACATAAATGAAACACCAGAAGGTTATGTTACAAGCATGAAACCAGTTAAAGCAGAACAGTTTGATGAAGCGTTTCCGTTGAGAAGCGTGGCTGTGAAAAAAGATGACTGCAAAGGTTGTACAGTAGGCTGTGCAGGCATCTGTGGCTTTCTCAGACAAGCTAATATGTGCTTGGCTGAAAACTCGTCGACTCAAAATCTAGCTGATTCAGTACTAGAGTCACTAACAGCAAAGCCTGATGTGTTGGCTAAGGACTCATTTGTTAGCAGTAAAAAATCATGTCGATTGGGTTTTGGTCTTGGCACAATTCCGGAGTATGGATCTGTTGGAGTATGCCAACCTTGGTCCACAAGATCAGCAGAGGTTAAACAAGTGCATCGGGCGAGACCAACAGCAATCAGAAGTCAAGAAGATAGTGATGCTGCAGCTCTATGTGCTTTGGTCGAGACCATGGATTTGGACACCAAACCTCTTGCTGAGGCTAGCTCTGGTAGTAACTCAGGAGTGCACATCTGCGGCCCTGACAGGGGGCATAACTCCCATCCCTCGTGTTTGGCTAAAGTGCAGCATGCTGCAGACAGAGATGATGACGAAAATTCTTCTGGGTGTGTACATCCAAGCACCTCAGGAAATAACCGTGGTTATATTCCACATTATATAGGTGACCGCAGGATAAGGAGATTGTTTGCCTCCAGGTTAAGGAAGGCAGCTCGCAACAGGATATGTGGAGAGATGTCTTGTAAAGGTAACAAGCTGAGTTTGTGTGAAAAGAAGATGCCCACTACGCGCCGAAGAGTGCAACAAACAACTTTGAAGAGGAAAAGACTTGCTCAACTTTACTCCGAAAAATCATCTGATGAAGTCAAGTTAACCATCAAATCTTTCAACATCCCTGAACTACTAATTGAGATCCCTGAAAATGCAACAGTTGGTTCATTGAAGAAAACTGTGTCAGATGCTGTTACTACTATAATTGAACGCGGTCTCCGTGTCGGTATACTTCTTCAAGGAAAAAATATTCAAAATGACAACAAGACGCTTCGTCAGGCTGGGATTTGCCGTGGTAAAAAACTAAATGACATAGGCTTTACTCTGGAATGTGAAGCTGGGCAAGATTCTCACCCTGGTGTAATAGTGCCAGAAGAAATGGATTTTGTTGGTGCATCTGTTGTGGACAAGTCTGCTACGGTGAAATGCGAAGAACCTGCTGAGAACCAGCAGCTTATGCAAGATTTTCCAGGCTGCAGCTTGAGTGATCCTGGTTCTGTTGATTATCCCGTGGAATGGAGCACACAAGAAACATCAGCAAGCTCCCAAGCCATCGTCCCTTTTGCAGATCCAAACTCACTGGCGCTGGCCAATGTGCCGCTTTCTAGGTCAAAGCGACCAGATTTTGGGCAAAGACGGATAAGGAGGCCTTTCACTGTTGCTGAAGTGGAGTTGCTGGTGGAAGCCGTCGAGCACCTTGGAACAGGAAGGTGGAGGGACGTCAAATTCCGCGCATTTGAAAATGTTCATCATAGGACCTATGTTGATCTGAAGGACAAGTGGAAGACCCTGGTGCACACGGCGAGCATAGCGCCGCAGCAAAGAAGGGGAGCTCCAGTTCCACAGGAACTCCTGGACCGTGTGCTCGCCGCACAGGCCTACTGGTCGGAGCAGCAGGCAAAGCTCCATGGCGATCCCCCTGTTCCTGAAATCTGCCCTACCTGA
Protein Sequence
- >LOC_Os02g57270.1 protein MVLQKRLDYGSHGHRAPIKPRVATLAPVKRSTRIRKKQMYALDLLATAAEKLLADQDNLSSGPNINETPEGYVTSMKPVKAEQFDEAFPLRSVAVKKDDCKGCTVGCAGICGFLRQANMCLAENSSTQNLADSVLESLTAKPDVLAKDSFVSSKKSCRLGFGLGTIPEYGSVGVCQPWSTRSAEVKQVHRARPTAIRSQEDSDAAALCALVETMDLDTKPLAEASSGSNSGVHICGPDRGHNSHPSCLAKVQHAADRDDDENSSGCVHPSTSGNNRGYIPHYIGDRRIRRLFASRLRKAARNRICGEMSCKGNKLSLCEKKMPTTRRRVQQTTLKRKRLAQLYSEKSSDEVKLTIKSFNIPELLIEIPENATVGSLKKTVSDAVTTIIERGLRVGILLQGKNIQNDNKTLRQAGICRGKKLNDIGFTLECEAGQDSHPGVIVPEEMDFVGASVVDKSATVKCEEPAENQQLMQDFPGCSLSDPGSVDYPVEWSTQETSASSQAIVPFADPNSLALANVPLSRSKRPDFGQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRVLAAQAYWSEQQAKLHGDPPVPEICPT*
- >LOC_Os02g57270.2 protein MVLQKRLDYGSHGHRAPIKPRVATLAPVKRSTRIRKKQMYALDLLATAAEKLLADQDNLSSGPNINETPEGYVTSMKPVKAEQFDEAFPLRSVAVKKDDCKGCTVGCAGICGFLRQANMCLAENSSTQNLADSVLESLTAKPDVLAKDSFVSSKKSCRLGFGLGTIPEYGSVGVCQPWSTRSAEVKQVHRARPTAIRSQEDSDAAALCALVETMDLDTKPLAEASSGSNSGVHICGPDRGHNSHPSCLAKVQHAADRDDDENSSGCVHPSTSGNNRGYIPHYIGDRRIRRLFASRLRKAARNRICGEMSCKGNKLSLCEKKMPTTRRRVQQTTLKRKRLAQLYSEKSSDEVKLTIKSFNIPELLIEIPENATVGSLKKTVSDAVTTIIERGLRVGILLQGKNIQNDNKTLRQAGICRGKKLNDIGFTLECEAGQDSHPGVIVPEEMDFVGASVVDKSATVKCEEPAENQQLMQDFPGCSLSDPGSVDYPVEWSTQETSASSQAIVPFADPNSLALANVPLSRSKRPDFGQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRVLAAQAYWSEQQAKLHGDPPVPEICPT*