Gene Details:
- MSU gene ID: LOC_Os03g19510
- RAPdb gene ID: Os03g0308100
- Gene Symbol: OsClpP5
- Genome: MSU7 , IRGSP-1.0
- Species: Oryza sativa
Functional Descriptions:
- Here, we show that a spontaneous mutable virescent allele, pyl-v, is caused by the disruption of the nuclear-coded essential chloroplast protease gene, OsClpP5, due to insertion of a 607-bp non-autonomous DNA transposon, non-autonomous DNA-based active rice transposon one (nDart1), belonging to the hAT superfamily.
Function-related keywords:
Literature:
- A rice virescent-yellow leaf mutant reveals new insights into the role and assembly of plastid caseinolytic protease in higher plants . DOI: 10.1104/pp.113.217604 ; PMID: 23803583
- An active DNA transposon nDart causing leaf variegation and mutable dwarfism and its related elements in rice . DOI: 10.1111/j.1365-313X.2005.02600.x ; PMID: 16367953
- Plastid caseinolytic protease OsClpR1 regulates chloroplast development and chloroplast RNA editing in rice . DOI: 10.1186/s12284-021-00489-6 ; PMID: 34018050
Related News:
Gene Resources:
- NCBI ID: AB116073
- UniProt accessions:
Sequences:
cDNA Sequence
- >LOC_Os03g19510.1 cDNA GTCGGCATGGCCCGCGTCTTCTCCTCGTCTTCCTCTCTCTCGAGTCTCGAAGAAGACACACACTATTCTCTCTTCTTCTTACCACCCTCTCCCGGATAAGAGGCGCAACCAAAGCCCCCACCCTCGCCCAAAACCCCCACGAGCCGCGGCCATGGCGACCACCACCACCACCCCCTCCTCCTCTCTCACCGCCCCTCTCCTCCGCCCGAGCTCGAACGCGAACCCCGCCCCGAGATCTCTGCCGCTCCTCAGGAGCCGGAGGTGCGCTCGGGCCGTGGCGACCGCCGCCGCCGCCGCTGGCCACGGGGCCGCTCATCAGAGGAGCGGGATTTGGTCGATCAGGGATGATTTGGTGGTGCCGAGGTCGCCCTACTTCCCTGTGGAGTATGCGTCGGGGCAGGAACGCGGGCCATCGCCCATGGTGATGGAGCGGTTCCAGAGCGTCGTCAGCCAGCTCTTCCAGCACAGGATTATCCGGTGTGGTGGACCCGTGGAGGATGATATGGCGAACATCATCGTTGCCCAGCTGCTATATCTCGATGCCATCGATCCTAACAAGGATATCATTATGTATGTGAATTCTCCTGGAGGATCAGTGACAGCTGGGATGGCCATATTCGACACGATGAAGCATATCAGACCTGATGTTTCCACAGTTTGTATTGGACTTGCTGCAAGTATGGGAGCTTTTCTGCTTAGTGCTGGGACAAAAGGGAAGCGATACAGCTTACCTAACTCAAGAATAATGATCCATCAACCTCTCGGAGGAGCCCAAGGACAAGAGACTGATCTTGAGATCCAGGCTAATGAGATGCTGCATCACAAGGCTAACCTGAATGGATACCTAGCATACCACACTGGGCAGCCCCTAGATAAGATCAACGTAGATACTGACCGTGATTACTTCATGAGCGCGAAGGAGGCAAAGGAGTATGGTCTAATTGATGGAGTTATCATGAATCCCCTTAAAGCCCTTCAACCGCTTCCTGCTTCTAGTTAGCCATGGAGTGCTCAATCTCCACGGAGCATTTTTTGGTTATCTTTTAGAACTGTTATTGCATCCACTGTTTTTATTAGCTTGGCAAGATAGTTTTGCGATTCCACAAGCAACCACATCCTGAGGCTTCAAAGTTTGTACAATACAGATGTACTACTAGGAGGATATCTTCTGCGATGAATATTGCAACTTATTTGATGTACTATTAGGAGGATATCTTCTGCGATGAATATTGCAACTTATTTGATACTCCCTCTGTTTCATGCCAAGTCGATTTGATTTTTTTTCCTTAGACAATTTTCTGTAGGTTTGACTAAATTTATCAAAAAATTAGCATAATCTACAACACTAAA
CDS Sequence
- >LOC_Os03g19510.1 CDS ATGGCGACCACCACCACCACCCCCTCCTCCTCTCTCACCGCCCCTCTCCTCCGCCCGAGCTCGAACGCGAACCCCGCCCCGAGATCTCTGCCGCTCCTCAGGAGCCGGAGGTGCGCTCGGGCCGTGGCGACCGCCGCCGCCGCCGCTGGCCACGGGGCCGCTCATCAGAGGAGCGGGATTTGGTCGATCAGGGATGATTTGGTGGTGCCGAGGTCGCCCTACTTCCCTGTGGAGTATGCGTCGGGGCAGGAACGCGGGCCATCGCCCATGGTGATGGAGCGGTTCCAGAGCGTCGTCAGCCAGCTCTTCCAGCACAGGATTATCCGGTGTGGTGGACCCGTGGAGGATGATATGGCGAACATCATCGTTGCCCAGCTGCTATATCTCGATGCCATCGATCCTAACAAGGATATCATTATGTATGTGAATTCTCCTGGAGGATCAGTGACAGCTGGGATGGCCATATTCGACACGATGAAGCATATCAGACCTGATGTTTCCACAGTTTGTATTGGACTTGCTGCAAGTATGGGAGCTTTTCTGCTTAGTGCTGGGACAAAAGGGAAGCGATACAGCTTACCTAACTCAAGAATAATGATCCATCAACCTCTCGGAGGAGCCCAAGGACAAGAGACTGATCTTGAGATCCAGGCTAATGAGATGCTGCATCACAAGGCTAACCTGAATGGATACCTAGCATACCACACTGGGCAGCCCCTAGATAAGATCAACGTAGATACTGACCGTGATTACTTCATGAGCGCGAAGGAGGCAAAGGAGTATGGTCTAATTGATGGAGTTATCATGAATCCCCTTAAAGCCCTTCAACCGCTTCCTGCTTCTAGTTAG
Protein Sequence
- >LOC_Os03g19510.1 protein MATTTTTPSSSLTAPLLRPSSNANPAPRSLPLLRSRRCARAVATAAAAAGHGAAHQRSGIWSIRDDLVVPRSPYFPVEYASGQERGPSPMVMERFQSVVSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAIDPNKDIIMYVNSPGGSVTAGMAIFDTMKHIRPDVSTVCIGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGQETDLEIQANEMLHHKANLNGYLAYHTGQPLDKINVDTDRDYFMSAKEAKEYGLIDGVIMNPLKALQPLPASS*