Gene Details:
- MSU gene ID: LOC_Os03g38740
- RAPdb gene ID: Os03g0583900
- Gene Symbol: OsDCL2a
- Genome: MSU7 , IRGSP-1.0
- Species: Oryza sativa
Functional Descriptions:
Function-related keywords:
Literature:
- Identification of precursor transcripts for 6 novel miRNAs expands the diversity on the genomic organisation and expression of miRNA genes in rice . DOI: 10.1186/1471-2229-8-123 ; PMID: 19055717
- Knock-down of OsDCL2 in rice negatively affects maintenance of the endogenous dsRNA virus, Oryza sativa endornavirus . DOI: 10.1093/pcp/pcp167 ; PMID: 19933266
- DCL2 is highly expressed in the egg cell in both rice and Arabidopsis . DOI: 10.4161/psb.6.4.14650 ; PMID: 21673515
- Genome-wide identification, organization and phylogenetic analysis of Dicer-like, Argonaute and RNA-dependent RNA Polymerase gene families and their expression analysis during reproductive development and stress in rice . DOI: 10.1186/1471-2164-9-451 ; PMID: 18826656
Related News:
Gene Resources:
Sequences:
cDNA Sequence
- >LOC_Os03g38740.1 cDNA ACTCGAACGAACCGGCGGGGGCGAATCCTTCGCCCCGAAGCCTCCCACTACCAATTGGTCCCATCCCTCCTCCTCCCGCTTCCCCCCCATAAGATCATTTATCTCTCGTCATTGTTCGAGCCCAACACACGCGCGCGCGACTCGTAGGAATTCGGTTCGGATTCGTGCGTGCACCGAAGGAGGCGGAGGCGGAGGCGGCCCAAGCGTCGGCGCCACCTCACTCTCCCACCCCCATCCCGCCGCCTCCCCCGATTCCTCCCCCAAACCCCTCCTCCTCCTCCGCCGCCGCCGCCGTCGCCATGGGTGGCCCCCTCACCGCCGCCGGAGGTCGAGGAGATGGGGGCGCCAAGGCGGTGGAACCGCTCCGGCCTCCGCCGCCGCCCGACCCGAAGACAATGGCCAGATGGTACCAGCTGGAGGCGCTGGAGCGGGCGGTGCGGGGGAACACCCTGGCGTTCCTGGAGACCGGGAGCGGGAAGACGCTCATCGCGGTGATGCTGCTCCGGGCGTACGCGCACCGCGTGCGGAGGCCGGACTCGCGCCGCTTCGCCGTCTTCCTCGTCCCCACCGTCGTCCTCGTGGGCCAGCAGGCGCGCGTCGTCGAGCAGCACACCGACCTCGTCGTCAAGCAGTTCTGCGGCGAGATGGGGGTCGACTTCTGGGACGCCGCCACCTGGCGATCCCAACTGGAGGACGGCGAGGTGCTCGTCATGACGCCGCAGATCCTGCTCGACAACCTCCGCCACAGCTTCTTCCGCCTCCAGGACATCGCGCTGCTCATCTTCGACGAGTGTCACCACGCCAGGGGCAATACGCCGTACGCCTGCATTTTCAAGGAATTTTATCACCCCCAGTTGAATTCTAGTGCGTCAGACCCTCTGCCAAGGATATTTGGGATGTCTGCTTCGCTCATTTATTCAAAAGATTTGAATCCGCACAATTATTCAAAGCAAATTTCTGAGATTGAGAATCTCATGAATTCCAAGGTGTACACTGTTGATAGTGAATCAGCTTTGTCGGAGTACATACCATTTGCTTCTACAAAAATAGTGGACTTTGACGATTCCAACATTTCATCTGAGCTGCATGCCAATATTCTCAGTTGTTTGAATAGATTGAATAAAAAGCATATAGAAGCTCTGGACAGAAAACTACATGGTTCATCTCTGGAAAACGCTAAGCAAAGGATATCAAAATTGCATCATACATTTGTATATTGTTTATATAATCTAGGAGTATGGCTGGCAGCAAAGGCTGCTGAGGTACAATCATACGAGGAAAACAGCCTATCCTTCTGGGGTGAAACATTGGATAAAAATGTTGAGGGCTTCATTAGAAACTACAGCGAAGAAGTACATAGAGAACTTTCATGTTTCTTGAAGAATGGTCATATTGGTGAAAAATTTCCAGCTGATTCTCAAGATGGGATATTGACACCCAAAGTTCATTGCCTTATTCGAACTCTTCTGCAGTACAGGCATATGCAAGACTTAAGATGCATTGTGTTTGTTGAGAGAGTTATCACAAGCATAGTATTAGAGCACCTACTTTCATCTATTCATCAAATGTCTGGGTGGAATGTTAAGCACATGGCAGGAAGCCGTCCTGGTTTGCTATCTCAGAGCAGGAAAAATCATACAGAAATTGTTGAATCTTTTCGAAAAGGAAAGGTACATATAATTATTGCCACACAAATTTTGGAGGAGGGTTTAGATGTGCCAAGTTGTAACTTGGTAATTCGCTTTGATCCATCAGCAACAGTATGCAGCTTTATACAGTCCCGTGGTCGAGCTAGGATGGAAAACTCTGACTATCTTTTACTTGTCGGAAGGGGGGATGTGGAAGCTCAAACTAATGCAGAGAAGTTTCTCGCAAGTGGGCAAATAATGCGGGAGGAATCTCTGAGATTGGGATCAATTTCTTGTCAACCACTTGAGAACACCTTGTGCGAGGATACCTATTACCGTGTCGAGTCAACTAGAGCAATTGTGACACTAAACTCCAGCGTTCCATTAATTCATTTTTTCTGCTCAAAGCTTCCATCGGATGAATATTTTAATCCTCTACCAAGATTCGATATAGACAAGGCATCTGGCACATGCACTCTGCATCTTCCTAAGAGCAGTCCTGTGCAGACAGTTAATGTAGAAGGAGAAGGTTCTATTCTCAAGGAGACAGTTTGTCTTAAGGCCTGCCAAGAACTACATGCCATTGGTGCACTCACAGATTCTCTTTTACCAGAATTAGATGTTCCATGTGATGAAGAACCTGACATCGTTGTTGAGAACAAAATTGAGCAGCCTTCTTACTTTCCAGAAGAATTTGTGGATAATTGGCGCTCCTTTTCTCGTCTTGGCATATATTATTGCTATAAGATCTCATTGGAAGGATGTCCCAAAACAGCTTCTCCAACTGACATACTGTTAGCTTTGAAGTGTGATTTGGGATCTGACTTTACTTCTAGCTCATTTAAATTGCCAGGTGGGCAAGACAATGCTAGTGTTACCATGAAATATGTTGGCATCATCCATCTCAATCAAGAACAGGTAATTATTGCTAGAAGATTTCAGACAACTATTCTTTCGTTTCTTATTGGTGATGACCATTTGGAGGTTAGCAATGGTATTAAATACTTCCATGAGATGCAAGTGCCTATTGGAGTAGTCTATCTACTTCTGCCTTTAGTTTCTGGCAGAATTGATTGGTGCAGTATGAAGTTCTCATCCTCACCAATATATGAAGCTAACAACAAACATATGACACATTGCCATTCTTGTAAAGATATTGATTTACTGCAGACAAAAGATGGTCCTTTCTGCAGGTGCATCCTTAAAAATTCCATTGTGTGTACCCCTCATAATAACATCTTTTATGTTATTAGTGGGTTTCTTGACTTAGATGCAAATTCCTGTTTGCCTCAACATGATGGGACTGTTGTTACCTACAAAGATTATTTTAAGACTAGGCATGGTCTTACTTTGACTTTTGAAAATCAGCCGCTCTTGGCTGGCAGTAAACATGTGAAAGTGCGGAACTTCCTCCACAACTGCTACTCTAAAAAAGAAAAAGAACCTGGTGATAGATATAGTGTTGAGTTGCCACCTGAACTCTGCAGAATTATCATGTCACCAGTGTCCGCCAATAATTTGCACATCTTCTCATATGTTCCTTCCATAATGTTCCGCATCCAGTGCATGCTTCTTTCTGTGAAATTAAAGGTCCAATTAGGCCCAACAGTGCAGCAGTTTGACGTACCGGTTTTGAAGATCCTGGAAGCATTAACAACAAAGAAATGCCAAGAAGAATTTTCACAGGAATCATTAGAAACACTTGGGGATTCTTTCCTCAAATATGTTACAACTCGGCACCTTTTTAGTGAATACAGGCTTCAACATGAAGGCATATTAACAAAAATGAAGAAAAACTTGATCTCCAATGCAGCTCTGTGCCAGCTGGCCTGCAGCAGTAATCTTGTGGGTTACATTCATGCTGAGGAGTTTAATCCAAGAGATTGGATCATCCCTTGCTTGGACTATGATGAGCGTGATAACAAAAAAATTTCCTTTCTGGCACCCAATGGTATGTACAGCCAAAGGAAAATGTCTATTAAAAGTAAGAGGATTGCGGATTCAGTTGAGGCCTTAATTGGGGCTTACCTCAGTACTGCTGGGGAAAAGGCAGCATTTCTTTTGATGAAATCATTAGGGATGAATATAGAATTTCACACTGAAATTCCAGTTGAAAGGAAAATTTCAATGAAAGCTGAAGAGTTCATTAATGTGAGGAGCTTAGAGGGAATGCTTGGTTACAAGTTCAATGATTCTTTATTATTGCTCGAAGCATTGACACATGGCTCATATCAGACTTCTGGCCCTACTTCATGCTATCAGAGGCTCGAGTTTCTTGGAGATGCTATTTTGGATCATCTTTTCACTGAATATTACTACAGCAAATACCCTGACTGTACTCCAGAATTGTTGACAGATCTTAGATCTGCCTCTGTGAACAACAATTGTTACGCGCATGCAGCTGTTAAATCAGGATTAAACAAGCATATCCTTCACTCATCATCAGAACTGCATAGGAAGATGAGCTACTACCTTGAGGAATTTGGGCAGTCATTTACAGGTCCATCTTATGGCTGGGAAGCGGGCATTGGTCTACCAAAGGTTCTCGGGGATGTGATTGAATCAATAGCTGGTGCCATTTATCTCGACAGCAAGTGTGACAAGGAGGTTGTTTGGAGAAGCATGAAGCGGCTATTGGAACCTCTTGCCACCCCCGAAACCATCGAGCCTGACCCGGTGAAAGGGCTGCAAGAATTTTGTGATCGTAGATCATTCAAAATAACCTACGAAAAAAACCATGTTGATGGAGTCTCATCGGTCATTGCTCGGGTGAAGGCTGGAGAGACTACATACTCCGCAACAAAATCAGGTCCCTGCAAGTTGGTGGCGAAAAAGTTGGCATCAAAGGCTGTGCTTAAAGATCTGATTGCTGGTCACAAAGATACAGAGGCTGCTGCAGTATAGTGATACTTAACTATTTAAGCGTGCAACAGTAGCTAACAATTGATATAGATAGTTGCGCACAATAGAAAAGTTTTGGTTGGATTCATACATGTAATTTGGAAATGCTCCTTTTTGTGTGCTCGCAAACGATGCGTGTGAACGGCCTCATGAATTCTGGTAGGTTTTCATGCTTCAAACTTACAAGTATCGCAATTTTGTAAATTACAAATACGGGCATAGCACACCTGCCCATGCCATGCAGTAGTTTTTTTTTTCCTCGAAATAGTAGCATTAGTTGTATATTACTCATAGCATCAGATTGTACAGAAAGCATGCCAGCAAAAACGAAAAAATGTACAGACAGCATTTTGTTCGCATCAAGGGAAAACTTGTTTTAAGATGTTCTGTCTGATGATGAGCAAGCTGTTTGTTTGCTAGCGTCTATAGAATACTGTGTAAATTGTAACCACCCCAAAATATTGTATAGGTTTTGCTCCT
CDS Sequence
- >LOC_Os03g38740.1 CDS ATGGGTGGCCCCCTCACCGCCGCCGGAGGTCGAGGAGATGGGGGCGCCAAGGCGGTGGAACCGCTCCGGCCTCCGCCGCCGCCCGACCCGAAGACAATGGCCAGATGGTACCAGCTGGAGGCGCTGGAGCGGGCGGTGCGGGGGAACACCCTGGCGTTCCTGGAGACCGGGAGCGGGAAGACGCTCATCGCGGTGATGCTGCTCCGGGCGTACGCGCACCGCGTGCGGAGGCCGGACTCGCGCCGCTTCGCCGTCTTCCTCGTCCCCACCGTCGTCCTCGTGGGCCAGCAGGCGCGCGTCGTCGAGCAGCACACCGACCTCGTCGTCAAGCAGTTCTGCGGCGAGATGGGGGTCGACTTCTGGGACGCCGCCACCTGGCGATCCCAACTGGAGGACGGCGAGGTGCTCGTCATGACGCCGCAGATCCTGCTCGACAACCTCCGCCACAGCTTCTTCCGCCTCCAGGACATCGCGCTGCTCATCTTCGACGAGTGTCACCACGCCAGGGGCAATACGCCGTACGCCTGCATTTTCAAGGAATTTTATCACCCCCAGTTGAATTCTAGTGCGTCAGACCCTCTGCCAAGGATATTTGGGATGTCTGCTTCGCTCATTTATTCAAAAGATTTGAATCCGCACAATTATTCAAAGCAAATTTCTGAGATTGAGAATCTCATGAATTCCAAGGTGTACACTGTTGATAGTGAATCAGCTTTGTCGGAGTACATACCATTTGCTTCTACAAAAATAGTGGACTTTGACGATTCCAACATTTCATCTGAGCTGCATGCCAATATTCTCAGTTGTTTGAATAGATTGAATAAAAAGCATATAGAAGCTCTGGACAGAAAACTACATGGTTCATCTCTGGAAAACGCTAAGCAAAGGATATCAAAATTGCATCATACATTTGTATATTGTTTATATAATCTAGGAGTATGGCTGGCAGCAAAGGCTGCTGAGGTACAATCATACGAGGAAAACAGCCTATCCTTCTGGGGTGAAACATTGGATAAAAATGTTGAGGGCTTCATTAGAAACTACAGCGAAGAAGTACATAGAGAACTTTCATGTTTCTTGAAGAATGGTCATATTGGTGAAAAATTTCCAGCTGATTCTCAAGATGGGATATTGACACCCAAAGTTCATTGCCTTATTCGAACTCTTCTGCAGTACAGGCATATGCAAGACTTAAGATGCATTGTGTTTGTTGAGAGAGTTATCACAAGCATAGTATTAGAGCACCTACTTTCATCTATTCATCAAATGTCTGGGTGGAATGTTAAGCACATGGCAGGAAGCCGTCCTGGTTTGCTATCTCAGAGCAGGAAAAATCATACAGAAATTGTTGAATCTTTTCGAAAAGGAAAGGTACATATAATTATTGCCACACAAATTTTGGAGGAGGGTTTAGATGTGCCAAGTTGTAACTTGGTAATTCGCTTTGATCCATCAGCAACAGTATGCAGCTTTATACAGTCCCGTGGTCGAGCTAGGATGGAAAACTCTGACTATCTTTTACTTGTCGGAAGGGGGGATGTGGAAGCTCAAACTAATGCAGAGAAGTTTCTCGCAAGTGGGCAAATAATGCGGGAGGAATCTCTGAGATTGGGATCAATTTCTTGTCAACCACTTGAGAACACCTTGTGCGAGGATACCTATTACCGTGTCGAGTCAACTAGAGCAATTGTGACACTAAACTCCAGCGTTCCATTAATTCATTTTTTCTGCTCAAAGCTTCCATCGGATGAATATTTTAATCCTCTACCAAGATTCGATATAGACAAGGCATCTGGCACATGCACTCTGCATCTTCCTAAGAGCAGTCCTGTGCAGACAGTTAATGTAGAAGGAGAAGGTTCTATTCTCAAGGAGACAGTTTGTCTTAAGGCCTGCCAAGAACTACATGCCATTGGTGCACTCACAGATTCTCTTTTACCAGAATTAGATGTTCCATGTGATGAAGAACCTGACATCGTTGTTGAGAACAAAATTGAGCAGCCTTCTTACTTTCCAGAAGAATTTGTGGATAATTGGCGCTCCTTTTCTCGTCTTGGCATATATTATTGCTATAAGATCTCATTGGAAGGATGTCCCAAAACAGCTTCTCCAACTGACATACTGTTAGCTTTGAAGTGTGATTTGGGATCTGACTTTACTTCTAGCTCATTTAAATTGCCAGGTGGGCAAGACAATGCTAGTGTTACCATGAAATATGTTGGCATCATCCATCTCAATCAAGAACAGGTAATTATTGCTAGAAGATTTCAGACAACTATTCTTTCGTTTCTTATTGGTGATGACCATTTGGAGGTTAGCAATGGTATTAAATACTTCCATGAGATGCAAGTGCCTATTGGAGTAGTCTATCTACTTCTGCCTTTAGTTTCTGGCAGAATTGATTGGTGCAGTATGAAGTTCTCATCCTCACCAATATATGAAGCTAACAACAAACATATGACACATTGCCATTCTTGTAAAGATATTGATTTACTGCAGACAAAAGATGGTCCTTTCTGCAGGTGCATCCTTAAAAATTCCATTGTGTGTACCCCTCATAATAACATCTTTTATGTTATTAGTGGGTTTCTTGACTTAGATGCAAATTCCTGTTTGCCTCAACATGATGGGACTGTTGTTACCTACAAAGATTATTTTAAGACTAGGCATGGTCTTACTTTGACTTTTGAAAATCAGCCGCTCTTGGCTGGCAGTAAACATGTGAAAGTGCGGAACTTCCTCCACAACTGCTACTCTAAAAAAGAAAAAGAACCTGGTGATAGATATAGTGTTGAGTTGCCACCTGAACTCTGCAGAATTATCATGTCACCAGTGTCCGCCAATAATTTGCACATCTTCTCATATGTTCCTTCCATAATGTTCCGCATCCAGTGCATGCTTCTTTCTGTGAAATTAAAGGTCCAATTAGGCCCAACAGTGCAGCAGTTTGACGTACCGGTTTTGAAGATCCTGGAAGCATTAACAACAAAGAAATGCCAAGAAGAATTTTCACAGGAATCATTAGAAACACTTGGGGATTCTTTCCTCAAATATGTTACAACTCGGCACCTTTTTAGTGAATACAGGCTTCAACATGAAGGCATATTAACAAAAATGAAGAAAAACTTGATCTCCAATGCAGCTCTGTGCCAGCTGGCCTGCAGCAGTAATCTTGTGGGTTACATTCATGCTGAGGAGTTTAATCCAAGAGATTGGATCATCCCTTGCTTGGACTATGATGAGCGTGATAACAAAAAAATTTCCTTTCTGGCACCCAATGGTATGTACAGCCAAAGGAAAATGTCTATTAAAAGTAAGAGGATTGCGGATTCAGTTGAGGCCTTAATTGGGGCTTACCTCAGTACTGCTGGGGAAAAGGCAGCATTTCTTTTGATGAAATCATTAGGGATGAATATAGAATTTCACACTGAAATTCCAGTTGAAAGGAAAATTTCAATGAAAGCTGAAGAGTTCATTAATGTGAGGAGCTTAGAGGGAATGCTTGGTTACAAGTTCAATGATTCTTTATTATTGCTCGAAGCATTGACACATGGCTCATATCAGACTTCTGGCCCTACTTCATGCTATCAGAGGCTCGAGTTTCTTGGAGATGCTATTTTGGATCATCTTTTCACTGAATATTACTACAGCAAATACCCTGACTGTACTCCAGAATTGTTGACAGATCTTAGATCTGCCTCTGTGAACAACAATTGTTACGCGCATGCAGCTGTTAAATCAGGATTAAACAAGCATATCCTTCACTCATCATCAGAACTGCATAGGAAGATGAGCTACTACCTTGAGGAATTTGGGCAGTCATTTACAGGTCCATCTTATGGCTGGGAAGCGGGCATTGGTCTACCAAAGGTTCTCGGGGATGTGATTGAATCAATAGCTGGTGCCATTTATCTCGACAGCAAGTGTGACAAGGAGGTTGTTTGGAGAAGCATGAAGCGGCTATTGGAACCTCTTGCCACCCCCGAAACCATCGAGCCTGACCCGGTGAAAGGGCTGCAAGAATTTTGTGATCGTAGATCATTCAAAATAACCTACGAAAAAAACCATGTTGATGGAGTCTCATCGGTCATTGCTCGGGTGAAGGCTGGAGAGACTACATACTCCGCAACAAAATCAGGTCCCTGCAAGTTGGTGGCGAAAAAGTTGGCATCAAAGGCTGTGCTTAAAGATCTGATTGCTGGTCACAAAGATACAGAGGCTGCTGCAGTATAG
Protein Sequence
- >LOC_Os03g38740.1 protein MGGPLTAAGGRGDGGAKAVEPLRPPPPPDPKTMARWYQLEALERAVRGNTLAFLETGSGKTLIAVMLLRAYAHRVRRPDSRRFAVFLVPTVVLVGQQARVVEQHTDLVVKQFCGEMGVDFWDAATWRSQLEDGEVLVMTPQILLDNLRHSFFRLQDIALLIFDECHHARGNTPYACIFKEFYHPQLNSSASDPLPRIFGMSASLIYSKDLNPHNYSKQISEIENLMNSKVYTVDSESALSEYIPFASTKIVDFDDSNISSELHANILSCLNRLNKKHIEALDRKLHGSSLENAKQRISKLHHTFVYCLYNLGVWLAAKAAEVQSYEENSLSFWGETLDKNVEGFIRNYSEEVHRELSCFLKNGHIGEKFPADSQDGILTPKVHCLIRTLLQYRHMQDLRCIVFVERVITSIVLEHLLSSIHQMSGWNVKHMAGSRPGLLSQSRKNHTEIVESFRKGKVHIIIATQILEEGLDVPSCNLVIRFDPSATVCSFIQSRGRARMENSDYLLLVGRGDVEAQTNAEKFLASGQIMREESLRLGSISCQPLENTLCEDTYYRVESTRAIVTLNSSVPLIHFFCSKLPSDEYFNPLPRFDIDKASGTCTLHLPKSSPVQTVNVEGEGSILKETVCLKACQELHAIGALTDSLLPELDVPCDEEPDIVVENKIEQPSYFPEEFVDNWRSFSRLGIYYCYKISLEGCPKTASPTDILLALKCDLGSDFTSSSFKLPGGQDNASVTMKYVGIIHLNQEQVIIARRFQTTILSFLIGDDHLEVSNGIKYFHEMQVPIGVVYLLLPLVSGRIDWCSMKFSSSPIYEANNKHMTHCHSCKDIDLLQTKDGPFCRCILKNSIVCTPHNNIFYVISGFLDLDANSCLPQHDGTVVTYKDYFKTRHGLTLTFENQPLLAGSKHVKVRNFLHNCYSKKEKEPGDRYSVELPPELCRIIMSPVSANNLHIFSYVPSIMFRIQCMLLSVKLKVQLGPTVQQFDVPVLKILEALTTKKCQEEFSQESLETLGDSFLKYVTTRHLFSEYRLQHEGILTKMKKNLISNAALCQLACSSNLVGYIHAEEFNPRDWIIPCLDYDERDNKKISFLAPNGMYSQRKMSIKSKRIADSVEALIGAYLSTAGEKAAFLLMKSLGMNIEFHTEIPVERKISMKAEEFINVRSLEGMLGYKFNDSLLLLEALTHGSYQTSGPTSCYQRLEFLGDAILDHLFTEYYYSKYPDCTPELLTDLRSASVNNNCYAHAAVKSGLNKHILHSSSELHRKMSYYLEEFGQSFTGPSYGWEAGIGLPKVLGDVIESIAGAIYLDSKCDKEVVWRSMKRLLEPLATPETIEPDPVKGLQEFCDRRSFKITYEKNHVDGVSSVIARVKAGETTYSATKSGPCKLVAKKLASKAVLKDLIAGHKDTEAAAV*