Gene Details:
- MSU gene ID: LOC_Os03g50560
- RAPdb gene ID: Os03g0713600
- Gene Symbol: PIBP1
- Genome: MSU7 , IRGSP-1.0
- Species: Oryza sativa
Functional Descriptions:
- We find that PIBP1 and a homolog, Os06 g02240, bind DNA and function as unconventional transcription factors at the promoters of the defense genes OsWAK14 and OsPAL1, activating their expression.
- Here, we identify PIBP1 (PigmR-INTERACTING and BLAST RESISTANCE PROTEIN 1), an RRM (RNA-recognition motif) protein that specifically interacts with PigmR and other similar NLRs to trigger blast resistance.
- PigmR-promoted nuclear accumulation of PIBP1 ensures full blast resistance.
- Knockout of PIBP1 and Os06 g02240 greatly attenuated blast resistance.
Function-related keywords:
Literature:
- RRM Transcription Factors Interact with NLRs and Regulate Broad-Spectrum Blast Resistance in Rice . DOI: 10.1016/j.molcel.2019.03.013 ; PMID: 30975460
Related News:
Gene Resources:
Sequences:
cDNA Sequence
- >LOC_Os03g50560.1 cDNA CCGGCACGACCCCGTCGCGAGACCGAAAAAAAAAAACCACCGTGCCGTGGCCAGCAACCTACCTCCTCGGCTTCTCTCTCTCTCTCTCTCGGTCTCCCACCTCCTCATCCCGCTCGCCCGCTCGCCGACACGGCGCAAATCCAAGAACCCCCCACGCCGTGCGTGGACACCTCGCCTCGCCTCGTCCTCGCCCATCTCTCTCCTTTTGCCCGCATCCGCGGCCTCGCCTCGTAGTCCCCGCCGCATCTCGCCATTCCGCTACGCGCCCAAGCTACTGCTAGTAGTACTATCTGCTCCCCCGTGCGTGGTCGGGTCAGGTGGGTCGGCCGCGAGATCCCGCCATGGAGGTCAGGACAGTAAAAGTTAGCAACATTTCATTGAATGCTTCAAAAAGGGAGATCACAGAGTTCTTCTCTTTCTCTGGAGATATAGAATATGTTGAGATGCAAAGTGAATCTGAAAGGTCACAGCTTGCTTATGTTACATTTAAGGACTCACAAGGAGCAGATACTGCTGTGCTTCTCTCAGGGGCAACAATTGTTGACCGTTCTGTCATCATAACTCCAGTTGTGAACTATCAACTGCCTCCTGATGCACGCAAACAATCCGCAGGAGAGAAATCTTCCTCTGCTGAATCTGTAGTCAGGAAGGCAGAGGATGTTGTGAGCAGCATGTTGGCAAAGGGCTTTGTCCTCAGCAAGGATGCTCTGAACGTAGCAAGATCTTTTGACGAGCGTCACAACATACTGTCCAATGCTACAGCTACTGTCGCATCTCTAGACCGCCAGTATGGCGTGAGTGAAAAGATCAGTTTGGGCCGTGCAATTGTTGGTAGCAAGGTCAAGGAGGTGGATGATCGTTATCAGGTGTCAGAACTCACAAAGTCCGCTTTAGCGGCTGCGGAGCAGAAAGCCAGCATTGCAAGCTCTGCTATCATGAATAACCAGTATGTCTCAGCTGGTGCTTCCTGGTTAACAAGCGCATTTGGCATGGTAACCAAGGCGGCAGGTGACATGAGCTCCATGACCAAAGATAAGGTAGACAGGGCCGAAGAGGAGAGGAAAGCGATCATGTGGGAAGAGAGGAATGGGCTTGTAAGTGATTATGCCAAGATCCATCTTGATGAACCCTCTTCATGGGAGCCTGCAGTTCTTCCGTTGGAATCTGTGGATGAGCAGAAGCTCCAGGCTGTGTGATCTGCACAATCCAATGGTGGTCGTTTCTCTGCACGTCATTCTTTTGTTCATGTCCAATATAGAAGATTGTTTTTCACCGCTGCACGGTAGCAAAAATATTGAGCTTATTGCCTATAGTATGATGTAAATTTTAGAAATTCCCCATGTGTTTTCTTCCAGCTTTGTTATAGACCACTGAAAGGCTTACTTGTTCAGTGTTAGACATGGAAATGAAAGTTGTTCCAGACTTCCAGGCATACCTCTTGTTATGGTAGAACATGTTTCTGTGAGTTATCTCAGAACTATTTGTGCTCTGATATTCTGAAGCTACATGTGTAAGGCCCAAATCTGGGAAATAATCAAGGTCAAAATGAAATGCAGACAATATTTCCTAATCCTA
- >LOC_Os03g50560.2 cDNA CCGGCACGACCCCGTCGCGAGACCGAAAAAAAAAAACCACCGTGCCGTGGCCAGCAACCTACCTCCTCGGCTTCTCTCTCTCTCTCTCTCGGTCTCCCACCTCCTCATCCCGCTCGCCCGCTCGCCGACACGGCGCAAATCCAAGAACCCCCCACGCCGTGCGTGGACACCTCGCCTCGCCTCGTCCTCGCCCATCTCTCTCCTTTTGCCCGCATCCGCGGCCTCGCCTCGTAGTCCCCGCCGCATCTCGCCATTCCGCTACGCGCCCAAGCTACTGCTAGTAGTACTATCTGCTCCCCCGTGCGTGGTCGGGTCAGGTGGGTCGGCCGCGAGATCCCGCCATGGAGGTCAGGACAGTAAAAGTTAGCAACATTTCATTGAATGCTTCAAAAAGGGAGATCACAGAGTTCTTCTCTTTCTCTGGAGATATAGAATATGTTGAGATGCAAAGTGAATCTGAAAGGTCACAGCTTGCTTATGTTACATTTAAGGACTCACAAGGAGCAGATACTGCTGTGCTTCTCTCAGGGGCAACAATTGTTGACCGTTCTGTCATCATAACTCCAGTTGTGAACTATCAACTGCCTCCTGATGCACGCAAACAATCCGCAGGAGAGAAATCTTCCTCTGCTGAATCTGTAGTCAGGAAGGCAGAGGATGTTGTGAGCAGCATGTTGGCAAAGGGCTTTGTCCTCAGCAAGGATGCTCTGAACGTAGCAAGATCTTTTGACGAGCGTCACAACATACTGTCCAATGCTACAGCTACTGTCGCATCTCTAGACCGCCAGTATGGCGTGAGTGAAAAGATCAGTTTGGGCCGTGCAATTGTTGGTAGCAAGGTCAAGGAGGTGGATGATCGTTATCAGGTGTCAGAACTCACAAAGTCCGCTTTAGCGGCTGCGGAGCAGAAAGCCAGCATTGCAAGCTCTGCTATCATGAATAACCAGTATGTCTCAGCTGGTGCTTCCTGGTTAACAAGCGCATTTGGCATGGTAACCAAGGCGGCAGGTGACATGAGCTCCATGACCAAAGATAAGGTAGACAGGGCCGAAGAGGAGAGGAAAGCGATCATGTGGGAAGAGAGGAATGGGCTTGTAAGTGATTATGCCAAGATCCATCTTGATGAACCCTCTTCATGGGAGCCTGCAGTTCTTCCGTTGGAATCTGTGGATGAGCAGAAGCTCCAGGCTGTGTGATCTGCACAATCCAATGGTGGTCGTTTCTCTGCACGTCATTCTTTTGTTCATGTCCAATATAGAAGATTGTTTTTCACCGCTGCACGGTAGCAAAAATATTGAGCTTATTGCCTATAGTATGATGTAAATTTTAGAAATTCCCCATGTGTTTTCTTCCAGCTTTGTTATAGACCACTGAAAGGCTTACTTGTTCAGTGTTAGACATGGAAATGAAAGTTGTTCCAGACTTCCAGGCATACCTCTTGTTATGGTAGAACATGTTTCTGTGAGTTATCTCAGAACTATTTGTGCTCTGATATTCTGAAGCTACATGTGTAAGGCCCAAATCTGGGAAATAATCAAGGTCAAAATGAAATGCAGACAATATTTCCTAATCCTA
- >LOC_Os03g50560.3 cDNA CCGGCACGACCCCGTCGCGAGACCGAAAAAAAAAAACCACCGTGCCGTGGCCAGCAACCTACCTCCTCGGCTTCTCTCTCTCTCTCTCTCGGTCTCCCACCTCCTCATCCCGCTCGCCCGCTCGCCGACACGGCGCAAATCCAAGAACCCCCCACGCCGTGCGTGGACACCTCGCCTCGCCTCGTCCTCGCCCATCTCTCTCCTTTTGCCCGCATCCGCGGCCTCGCCTCGTAGTCCCCGCCGCATCTCGCCATTCCGCTACGCGCCCAAGCTACTGCTAGTAGTACTATCTGCTCCCCCGTGCGTGGTCGGGTCAGGTGGGTCGGCCGCGAGATCCCGCCATGGAGGTCAGGACAGTAAAAGTTAGCAACATTTCATTGAATGCTTCAAAAAGGGAGATCACAGAGTTCTTCTCTTTCTCTGGAGATATAGAATATGTTGAGATGCAAAGTGAATCTGAAAGGTCACAGCTTGCTTATGTTACATTTAAGGACTCACAAGGAGCAGATACTGCTGTGCTTCTCTCAGGGGCAACAATTGTTGACCGTTCTGTCATCATAACTCCAGTTGTGAACTATCAACTGCCTCCTGATGCACGCAAACAATCCGCAGGAGAGAAATCTTCCTCTGCTGAATCTGTAGTCAGGAAGGCAGAGGATGTTGTGAGCAGCATGTTGGCAAAGGGCTTTGTCCTCAGCAAGGATGCTCTGAACGTAGCAAGATCTTTTGACGAGCGTCACAACATACTGTCCAATGCTACAGCTACTGTCGCATCTCTAGACCGCCAGTATGGCGTGAGTGAAAAGATCAGTTTGGGCCGTGCAATTGTTGGTAGCAAGGTCAAGGAGGTGGATGATCGTTATCAGGTGTCAGAACTCACAAAGTCCGCTTTAGCGGCTGCGGAGCAGAAAGCCAGCATTGCAAGCTCTGCTATCATGAATAACCAGTATGTCTCAGCTGGTGCTTCCTGGTTAACAAGCGCATTTGGCATGGTAACCAAGGCGGCAGGTGACATGAGCTCCATGACCAAAGATAAGGTAGACAGGGCCGAAGAGGAGAGGAAAGCGATCATGTGGGAAGAGAGGAATGGGCTTGTAAGTGATTATGCCAAGATCCATCTTGATGAACCCTCTTCATGGGAGCCTGCAGTTCTTCCGTTGGAATCTGTGGATGAGCAGAAGCTCCAGGCTGTGTGATCTGCACAATCCAATGGTGGTCGTTTCTCTGCACGTCATTCTTTTGTTCATGTCCAATATAGAAGATTGTTTTTCACCGCTGCACGGTAGCAAAAATATTGAGCTTATTGCCTATAGTATGATGTAAATTTTAGAAATTCCCCATGTGTTTTCTTCCAGCTTTGTTATAGACCACTGAAAGGCTTACTTGTTCAGTGTTAGACATGGAAATGAAAGTTGTTCCAGACTTCCAGGCATACCTCTTGTTATGGTAGAACATGTTTCTGTGAGTTATCTCAGAACTATTTGTGCTCTGATATTCTGAAGCTACATGTGTAAGGCCCAAATCTGGGAAATAATCAAGGTCAAAATGAAATGCAGACAATATTTCCTAATCCTA
CDS Sequence
- >LOC_Os03g50560.1 CDS ATGGAGGTCAGGACAGTAAAAGTTAGCAACATTTCATTGAATGCTTCAAAAAGGGAGATCACAGAGTTCTTCTCTTTCTCTGGAGATATAGAATATGTTGAGATGCAAAGTGAATCTGAAAGGTCACAGCTTGCTTATGTTACATTTAAGGACTCACAAGGAGCAGATACTGCTGTGCTTCTCTCAGGGGCAACAATTGTTGACCGTTCTGTCATCATAACTCCAGTTGTGAACTATCAACTGCCTCCTGATGCACGCAAACAATCCGCAGGAGAGAAATCTTCCTCTGCTGAATCTGTAGTCAGGAAGGCAGAGGATGTTGTGAGCAGCATGTTGGCAAAGGGCTTTGTCCTCAGCAAGGATGCTCTGAACGTAGCAAGATCTTTTGACGAGCGTCACAACATACTGTCCAATGCTACAGCTACTGTCGCATCTCTAGACCGCCAGTATGGCGTGAGTGAAAAGATCAGTTTGGGCCGTGCAATTGTTGGTAGCAAGGTCAAGGAGGTGGATGATCGTTATCAGGTGTCAGAACTCACAAAGTCCGCTTTAGCGGCTGCGGAGCAGAAAGCCAGCATTGCAAGCTCTGCTATCATGAATAACCAGTATGTCTCAGCTGGTGCTTCCTGGTTAACAAGCGCATTTGGCATGGTAACCAAGGCGGCAGGTGACATGAGCTCCATGACCAAAGATAAGGTAGACAGGGCCGAAGAGGAGAGGAAAGCGATCATGTGGGAAGAGAGGAATGGGCTTGTAAGTGATTATGCCAAGATCCATCTTGATGAACCCTCTTCATGGGAGCCTGCAGTTCTTCCGTTGGAATCTGTGGATGAGCAGAAGCTCCAGGCTGTGTGA
- >LOC_Os03g50560.2 CDS ATGGAGGTCAGGACAGTAAAAGTTAGCAACATTTCATTGAATGCTTCAAAAAGGGAGATCACAGAGTTCTTCTCTTTCTCTGGAGATATAGAATATGTTGAGATGCAAAGTGAATCTGAAAGGTCACAGCTTGCTTATGTTACATTTAAGGACTCACAAGGAGCAGATACTGCTGTGCTTCTCTCAGGGGCAACAATTGTTGACCGTTCTGTCATCATAACTCCAGTTGTGAACTATCAACTGCCTCCTGATGCACGCAAACAATCCGCAGGAGAGAAATCTTCCTCTGCTGAATCTGTAGTCAGGAAGGCAGAGGATGTTGTGAGCAGCATGTTGGCAAAGGGCTTTGTCCTCAGCAAGGATGCTCTGAACGTAGCAAGATCTTTTGACGAGCGTCACAACATACTGTCCAATGCTACAGCTACTGTCGCATCTCTAGACCGCCAGTATGGCGTGAGTGAAAAGATCAGTTTGGGCCGTGCAATTGTTGGTAGCAAGGTCAAGGAGGTGGATGATCGTTATCAGGTGTCAGAACTCACAAAGTCCGCTTTAGCGGCTGCGGAGCAGAAAGCCAGCATTGCAAGCTCTGCTATCATGAATAACCAGTATGTCTCAGCTGGTGCTTCCTGGTTAACAAGCGCATTTGGCATGGTAACCAAGGCGGCAGGTGACATGAGCTCCATGACCAAAGATAAGGTAGACAGGGCCGAAGAGGAGAGGAAAGCGATCATGTGGGAAGAGAGGAATGGGCTTGTAAGTGATTATGCCAAGATCCATCTTGATGAACCCTCTTCATGGGAGCCTGCAGTTCTTCCGTTGGAATCTGTGGATGAGCAGAAGCTCCAGGCTGTGTGA
- >LOC_Os03g50560.3 CDS ATGGAGGTCAGGACAGTAAAAGTTAGCAACATTTCATTGAATGCTTCAAAAAGGGAGATCACAGAGTTCTTCTCTTTCTCTGGAGATATAGAATATGTTGAGATGCAAAGTGAATCTGAAAGGTCACAGCTTGCTTATGTTACATTTAAGGACTCACAAGGAGCAGATACTGCTGTGCTTCTCTCAGGGGCAACAATTGTTGACCGTTCTGTCATCATAACTCCAGTTGTGAACTATCAACTGCCTCCTGATGCACGCAAACAATCCGCAGGAGAGAAATCTTCCTCTGCTGAATCTGTAGTCAGGAAGGCAGAGGATGTTGTGAGCAGCATGTTGGCAAAGGGCTTTGTCCTCAGCAAGGATGCTCTGAACGTAGCAAGATCTTTTGACGAGCGTCACAACATACTGTCCAATGCTACAGCTACTGTCGCATCTCTAGACCGCCAGTATGGCGTGAGTGAAAAGATCAGTTTGGGCCGTGCAATTGTTGGTAGCAAGGTCAAGGAGGTGGATGATCGTTATCAGGTGTCAGAACTCACAAAGTCCGCTTTAGCGGCTGCGGAGCAGAAAGCCAGCATTGCAAGCTCTGCTATCATGAATAACCAGTATGTCTCAGCTGGTGCTTCCTGGTTAACAAGCGCATTTGGCATGGTAACCAAGGCGGCAGGTGACATGAGCTCCATGACCAAAGATAAGGTAGACAGGGCCGAAGAGGAGAGGAAAGCGATCATGTGGGAAGAGAGGAATGGGCTTGTAAGTGATTATGCCAAGATCCATCTTGATGAACCCTCTTCATGGGAGCCTGCAGTTCTTCCGTTGGAATCTGTGGATGAGCAGAAGCTCCAGGCTGTGTGA
Protein Sequence
- >LOC_Os03g50560.1 protein MEVRTVKVSNISLNASKREITEFFSFSGDIEYVEMQSESERSQLAYVTFKDSQGADTAVLLSGATIVDRSVIITPVVNYQLPPDARKQSAGEKSSSAESVVRKAEDVVSSMLAKGFVLSKDALNVARSFDERHNILSNATATVASLDRQYGVSEKISLGRAIVGSKVKEVDDRYQVSELTKSALAAAEQKASIASSAIMNNQYVSAGASWLTSAFGMVTKAAGDMSSMTKDKVDRAEEERKAIMWEERNGLVSDYAKIHLDEPSSWEPAVLPLESVDEQKLQAV*
- >LOC_Os03g50560.2 protein MEVRTVKVSNISLNASKREITEFFSFSGDIEYVEMQSESERSQLAYVTFKDSQGADTAVLLSGATIVDRSVIITPVVNYQLPPDARKQSAGEKSSSAESVVRKAEDVVSSMLAKGFVLSKDALNVARSFDERHNILSNATATVASLDRQYGVSEKISLGRAIVGSKVKEVDDRYQVSELTKSALAAAEQKASIASSAIMNNQYVSAGASWLTSAFGMVTKAAGDMSSMTKDKVDRAEEERKAIMWEERNGLVSDYAKIHLDEPSSWEPAVLPLESVDEQKLQAV*
- >LOC_Os03g50560.3 protein MEVRTVKVSNISLNASKREITEFFSFSGDIEYVEMQSESERSQLAYVTFKDSQGADTAVLLSGATIVDRSVIITPVVNYQLPPDARKQSAGEKSSSAESVVRKAEDVVSSMLAKGFVLSKDALNVARSFDERHNILSNATATVASLDRQYGVSEKISLGRAIVGSKVKEVDDRYQVSELTKSALAAAEQKASIASSAIMNNQYVSAGASWLTSAFGMVTKAAGDMSSMTKDKVDRAEEERKAIMWEERNGLVSDYAKIHLDEPSSWEPAVLPLESVDEQKLQAV*