Gene Details:
- MSU gene ID: LOC_Os03g51710
- RAPdb gene ID: Os03g0727200 ,Os03g0727150
- Gene Symbol: OSH3
- Genome: MSU7 , IRGSP-1.0
- Species: Oryza sativa
Functional Descriptions:
- The facts that these substitutions occurred specifically at the functionally important amino acids and the sequences are conserved in intron where neutral mutations accumulate suggest the substitutions at the invariant positions of OSH3 have been fixed by artificial selections during domestication.
- Based on these observations, we hypothesize that OSH3 is responsible for one of the traits that are selectively introduced during the domestication of most of Japonica and a part of Javanica type of rice.
- Mutations that cause amino acid substitutions at the invariant positions in homeodomain of OSH3 KNOX protein suggest artificial selection during rice domestication.
Function-related keywords:
Literature:
- Regional expression of the rice KN1-type homeobox gene family during embryo, shoot, and flower development . DOI: 10.1105/tpc.11.9.1651 ; PMID: 10488233
- Mutations that cause amino acid substitutions at the invariant positions in homeodomain of OSH3 KNOX protein suggest artificial selection during rice domestication . DOI: 10.1266/ggs.76.381 ; PMID: 11922107
- A loss-of-function mutation in the rice KNOX type homeobox gene, OSH3 . DOI: 10.1093/pcp/pcf003 ; PMID: 11828021
Related News:
Gene Resources:
Sequences:
cDNA Sequence
- >LOC_Os03g51710.2 cDNA ATAAAAACAAGCCATTCAAAATTATTACACCAGCCATTACACCAGCTGCGGCCGGCTGCTTTTATCTGATTTGACAATGGACGTGACGGCCACCCGACCTCTCTTTTCCTACTAGCTCTCCCCTACCCTACCCCTCTTTCCTTCTAGCAGTAGCCTCTACTACAGTCTACACACCCTCTCTATGCAAAACGCAATCTCATCTCTGTGCAGCCACTCATCCGATATTTCCCCCCATTTCTTTTCCTCTCCACTGTTTCCCTCCTCCTTTAATTATTCCCCCCCACTTCGCCTAGCTTTACAAACCCCCACAAATCGTCATTCTAACCAAAAGAAATCAGCAGGATTAGCCCTAGCTAAGTACTCCCAATAGCTGTGATAAACTGATAATTAGCCTTCTCTTCTTCCTTGCTGAGCTGGTCGGTGTCGTGTACCAAGAAACCCTCATCAAGCACATACGCTAATGGAGGAGCTTGAAGGCCACCGGGGTGAAGGCCGGCTGCCTCCTCCTCCTCCGTTGCTGCCGTTTCCCAAGGTCTCCGTGCAAGTCTACACCGTTCCTAGCTCGTCCACCGCCGCCTCCGCCGCCGCTGCAGGCGGAGCTCGTCAGGCTGTTGCACCGGCGACGCGGGACGGCGGCGACGGCGGCGGCCGCGCCGCCGGAGTTCTTGACGACCCTGTCAAGGCCAGGATCGTCTCCCACCCTCGCTACCACCGCCTCCTCGCCGCCTTCCTCGACTGCCACAAGGTTGGCTGCCCGGCGGAGGCGGCCGAGGAGATCGCGGCGGCGGCGCGGGTGCGGGAGGCGCGGCAGCGGGCGGCCGCGGCGGCGAGCCGCATGCCGCCGGCGCCGGAGGACCCGGAGCTCGACCAGTTCATGGAGGATTACTGCAAGCTGCTCGTGGAGTGTAAGGAGGAGCTCAGCCGGCCGCTCCAGGAGGCCGAGGAGTTCCTCAGGACGGTGGAGTCAGAGCTCAACTCCATCAATTCTGGGCCACCCCTTACAGCTCTAATCTCAGAATCCAAAGCCGGCCTCGATTCGTCGGACGACGACGAACACGAAGACGGCAGCGGCATGGAGATGATGGAGGCCGCGGAAGACGAGGACCTCGGCATCATCGACCCTCGCTCCGACGACAAAGCGCTGAAGAGGCACCTGCTGAGGAAGTACAGCGGTTACCTGGGAGGCCTGAGGAAGGAGCTGTCGAAGAAGAGGAAGAAAGGGAAGCTCCCCAAGGAGGCGAGGCAGAAGCTGCTCACCTGGTGGGAGCTCCATTACCGGTGGCCGAACCCGTCGGAGATGGAGAAGATCGCCCTCGCCGAGTCGACGGGGCTGGAGCAGAAGCAGATCAACAACTGTTTCATCAACCAGCGGAAGCGCCACTGGAAGCCCACGGAGGAGATGGAGTTCGCCGTCATGGAGGCCTACCACCACCAGAGCACCGATGCCGCGGCGGCGTTCTACGTCGACGTCGACGCCCGCCTCGTCGGAGCGACGGCGGCGGCTCCGGCATCGGCCGTGTACACCGCCAGGCCGGATCATGGCGTGTGGCGCGCATAGCCGTTGCTCGATTCGCCCGTTGCCGCCATCTGGAATTAATCTGAACTGCCCTTGCCTGTTACATATAGTAGGGTTGTTGATGATGGTTTCATATGTTTTTCCCCAAAGGGAAAGTCAGCTTGGACATTGGACCAATCAAGAAATGAAATCTCAGCATGTACCATATGTAAAGTTCTGGTCGGGAATGAATCAGACAGACACACGCTCTTGTTACTGTATATATGCAGTGAAGACAAGCAACTGAACCTAAATCATGCACTTCTGATGTTAATATTTGGTTGTACAGATCTGTGTACATGAACAGTTTAGCTTTACAAAAGATGGACGAATGTTGCAATAAGAGCTGAGAAGATCTGACGTCTAACCATACTGCCATAGTATGGATGTACAGAGAGGGTACACACTACACAGGGGGCATGGTGCAGCTACCCTTTGGAATTAGGAAATGTCAGTGTAGTTCCTTCTGATGCCTTTGATGGCGTACCAATCAGAGTATCAGACAGATTGTGTGCAATTCAGGACTGTGTTTTCAGATCAAGTGTTTCGCTCTCTCTTGGCTCCATTTTACTAGTGGTGAAAGGTTGAACAGACGATCGCAGACTTTCTGGACCTTCAGCGGCAATTCT
- >LOC_Os03g51710.1 cDNA ATAAAAACAAGCCATTCAAAATTATTACACCAGCCATTACACCAGCTGCGGCCGGCTGCTTTTATCTGATTTGACAATGGACGTGACGGCCACCCGACCTCTCTTTTCCTACTAGCTCTCCCCTACCCTACCCCTCTTTCCTTCTAGCAGTAGCCTCTACTACAGTCTACACACCCTCTCTATGCAAAACGCAATCTCATCTCTGTGCAGCCACTCATCCGATATTTCCCCCCATTTCTTTTCCTCTCCACTGTTTCCCTCCTCCTTTAATTATTCCCCCCCACTTCGCCTAGCTTTACAAACCCCCACAAATCGTCATTCTAACCAAAAGAAATCAGCAGGATTAGCCCTAGCTAAGTACTCCCAATAGCTGTGATAAACTGATAATTAGCCTTCTCTTCTTCCTTGCTGAGCTGGTCGGTGTCGTGTACCAAGAAACCCTCATCAAGCACATACGCTAATGGAGGAGCTTGAAGGCCACCGGGGTGAAGGCCGGCTGCCTCCTCCTCCTCCGTTGCTGCCGTTTCCCAAGGTCTCCGTGCAAGTCTACACCGTTCCTAGCTCGTCCACCGCCGCCTCCGCCGCCGCTGCAGGCGGAGCTCGTCAGGCTGTTGCACCGGCGACGCGGGACGGCGGCGACGGCGGCGGCCGCGCCGCCGGAGTTCTTGACGACCCTGTCAAGGCCAGGATCGTCTCCCACCCTCGCTACCACCGCCTCCTCGCCGCCTTCCTCGACTGCCACAAGGTTGGCTGCCCGGCGGAGGCGGCCGAGGAGATCGCGGCGGCGGCGCGGGTGCGGGAGGCGCGGCAGCGGGCGGCCGCGGCGGCGAGCCGCATGCCGCCGGCGCCGGAGGACCCGGAGCTCGACCAGTTCATGGAGGATTACTGCAAGCTGCTCGTGGAGTGTAAGGAGGAGCTCAGCCGGCCGCTCCAGGAGGCCGAGGAGTTCCTCAGGACGGTGGAGTCAGAGCTCAACTCCATCAATTCTGGGCCACCCCTTACAGCTCTAATCTCAGAATCCAAAGCCGGCCTCGATTCGTCGGACGACGACGAACACGAAGACGGCAGCGGCATGGAGATGATGGAGGCCGCGGAAGACGAGGACCTCGGCATCATCGACCCTCGCTCCGACGACAAAGCGCTGAAGAGGCACCTGCTGAGGAAGTACAGCGGTTACCTGGGAGGCCTGAGGAAGGAGCTGTCGAAGAAGAGGAAGAAAGGGAAGCTCCCCAAGGAGGCGAGGCAGAAGCTGCTCACCTGGTGGGAGCTCCATTACCGGTGGCCGAACCCGTCGGAGATGGAGAAGATCGCCCTCGCCGAGTCGACGGGGCTGGAGCAGAAGCAGATCAACAACTGTTTCATCAACCAGCGGAAGCGCCACTGGAAGCCCACGGAGGAGATGGAGTTCGCCGTCATGGAGGCCTACCACCACCAGAGCACCGATGCCGCGGCGGCGTTCTACGTCGACGTCGACGCCCGCCTCGTCGGAGCGACGGCGGCGGCTCCGGCATCGGCCGTGTACACCGCCAGGCCGGATCATGGCGTGTGGCGCGCATAGCCGTTGCTCGATTCGCCCGTTGCCGCCATCTGGAATTAATCTGAACTGCCCTTGCCTGTTACATATAGTAGGGTTGTTGATGATGGTTTCATATGTTTTTCCCCAAAGGGAAAGTCAGCTTGGACATTGGACCAATCAAGAAATGAAATCTCAGCATGTACCATATGTAAAGTTCTGGTCGGGAATGAATCAGACAGACACACGCTCTTGTTACTGTATATATGCAGTGAAGACAAGCAACTGAACCTAAATCATGCACTTCTGATGTTAATATTTGGTTGTACAGATCTGTGTACATGAACAGTTTAGCTTTACAAAAGATGGACGAATGTTGCAATAAGAGCTGAGAAGATCTGACGTCTAACCATACTGCCATAGTATGGATGTACAGAGAGGGTACACACTACACAGGGGGCATGGTGCAGCTACCCTTTGGAATTAGGAAATGTCAGTGTAGTTCCTTCTGATGCCTTTGATGGCGTACCAATCAGAGTATCAGACAGATTGTGTGCAATTCAGGACTGTGTTTTCAGATCAAGTGTTTCGCTCTCTCTTGGCTCCATTTTACTAGTGGTGAAAGGTTGAACAGACGATCGCAGACTTTCTGGACCTTCAGCGGCAATTCT
CDS Sequence
- >LOC_Os03g51710.2 CDS ATGGAGGAGCTTGAAGGCCACCGGGGTGAAGGCCGGCTGCCTCCTCCTCCTCCGTTGCTGCCGTTTCCCAAGGTCTCCGTGCAAGTCTACACCGTTCCTAGCTCGTCCACCGCCGCCTCCGCCGCCGCTGCAGGCGGAGCTCGTCAGGCTGTTGCACCGGCGACGCGGGACGGCGGCGACGGCGGCGGCCGCGCCGCCGGAGTTCTTGACGACCCTGTCAAGGCCAGGATCGTCTCCCACCCTCGCTACCACCGCCTCCTCGCCGCCTTCCTCGACTGCCACAAGGTTGGCTGCCCGGCGGAGGCGGCCGAGGAGATCGCGGCGGCGGCGCGGGTGCGGGAGGCGCGGCAGCGGGCGGCCGCGGCGGCGAGCCGCATGCCGCCGGCGCCGGAGGACCCGGAGCTCGACCAGTTCATGGAGGATTACTGCAAGCTGCTCGTGGAGTGTAAGGAGGAGCTCAGCCGGCCGCTCCAGGAGGCCGAGGAGTTCCTCAGGACGGTGGAGTCAGAGCTCAACTCCATCAATTCTGGGCCACCCCTTACAGCTCTAATCTCAGAATCCAAAGCCGGCCTCGATTCGTCGGACGACGACGAACACGAAGACGGCAGCGGCATGGAGATGATGGAGGCCGCGGAAGACGAGGACCTCGGCATCATCGACCCTCGCTCCGACGACAAAGCGCTGAAGAGGCACCTGCTGAGGAAGTACAGCGGTTACCTGGGAGGCCTGAGGAAGGAGCTGTCGAAGAAGAGGAAGAAAGGGAAGCTCCCCAAGGAGGCGAGGCAGAAGCTGCTCACCTGGTGGGAGCTCCATTACCGGTGGCCGAACCCGTCGGAGATGGAGAAGATCGCCCTCGCCGAGTCGACGGGGCTGGAGCAGAAGCAGATCAACAACTGTTTCATCAACCAGCGGAAGCGCCACTGGAAGCCCACGGAGGAGATGGAGTTCGCCGTCATGGAGGCCTACCACCACCAGAGCACCGATGCCGCGGCGGCGTTCTACGTCGACGTCGACGCCCGCCTCGTCGGAGCGACGGCGGCGGCTCCGGCATCGGCCGTGTACACCGCCAGGCCGGATCATGGCGTGTGGCGCGCATAG
- >LOC_Os03g51710.1 CDS ATGGAGGAGCTTGAAGGCCACCGGGGTGAAGGCCGGCTGCCTCCTCCTCCTCCGTTGCTGCCGTTTCCCAAGGTCTCCGTGCAAGTCTACACCGTTCCTAGCTCGTCCACCGCCGCCTCCGCCGCCGCTGCAGGCGGAGCTCGTCAGGCTGTTGCACCGGCGACGCGGGACGGCGGCGACGGCGGCGGCCGCGCCGCCGGAGTTCTTGACGACCCTGTCAAGGCCAGGATCGTCTCCCACCCTCGCTACCACCGCCTCCTCGCCGCCTTCCTCGACTGCCACAAGGTTGGCTGCCCGGCGGAGGCGGCCGAGGAGATCGCGGCGGCGGCGCGGGTGCGGGAGGCGCGGCAGCGGGCGGCCGCGGCGGCGAGCCGCATGCCGCCGGCGCCGGAGGACCCGGAGCTCGACCAGTTCATGGAGGATTACTGCAAGCTGCTCGTGGAGTGTAAGGAGGAGCTCAGCCGGCCGCTCCAGGAGGCCGAGGAGTTCCTCAGGACGGTGGAGTCAGAGCTCAACTCCATCAATTCTGGGCCACCCCTTACAGCTCTAATCTCAGAATCCAAAGCCGGCCTCGATTCGTCGGACGACGACGAACACGAAGACGGCAGCGGCATGGAGATGATGGAGGCCGCGGAAGACGAGGACCTCGGCATCATCGACCCTCGCTCCGACGACAAAGCGCTGAAGAGGCACCTGCTGAGGAAGTACAGCGGTTACCTGGGAGGCCTGAGGAAGGAGCTGTCGAAGAAGAGGAAGAAAGGGAAGCTCCCCAAGGAGGCGAGGCAGAAGCTGCTCACCTGGTGGGAGCTCCATTACCGGTGGCCGAACCCGTCGGAGATGGAGAAGATCGCCCTCGCCGAGTCGACGGGGCTGGAGCAGAAGCAGATCAACAACTGTTTCATCAACCAGCGGAAGCGCCACTGGAAGCCCACGGAGGAGATGGAGTTCGCCGTCATGGAGGCCTACCACCACCAGAGCACCGATGCCGCGGCGGCGTTCTACGTCGACGTCGACGCCCGCCTCGTCGGAGCGACGGCGGCGGCTCCGGCATCGGCCGTGTACACCGCCAGGCCGGATCATGGCGTGTGGCGCGCATAG
Protein Sequence
- >LOC_Os03g51710.2 protein MEELEGHRGEGRLPPPPPLLPFPKVSVQVYTVPSSSTAASAAAAGGARQAVAPATRDGGDGGGRAAGVLDDPVKARIVSHPRYHRLLAAFLDCHKVGCPAEAAEEIAAAARVREARQRAAAAASRMPPAPEDPELDQFMEDYCKLLVECKEELSRPLQEAEEFLRTVESELNSINSGPPLTALISESKAGLDSSDDDEHEDGSGMEMMEAAEDEDLGIIDPRSDDKALKRHLLRKYSGYLGGLRKELSKKRKKGKLPKEARQKLLTWWELHYRWPNPSEMEKIALAESTGLEQKQINNCFINQRKRHWKPTEEMEFAVMEAYHHQSTDAAAAFYVDVDARLVGATAAAPASAVYTARPDHGVWRA*
- >LOC_Os03g51710.1 protein MEELEGHRGEGRLPPPPPLLPFPKVSVQVYTVPSSSTAASAAAAGGARQAVAPATRDGGDGGGRAAGVLDDPVKARIVSHPRYHRLLAAFLDCHKVGCPAEAAEEIAAAARVREARQRAAAAASRMPPAPEDPELDQFMEDYCKLLVECKEELSRPLQEAEEFLRTVESELNSINSGPPLTALISESKAGLDSSDDDEHEDGSGMEMMEAAEDEDLGIIDPRSDDKALKRHLLRKYSGYLGGLRKELSKKRKKGKLPKEARQKLLTWWELHYRWPNPSEMEKIALAESTGLEQKQINNCFINQRKRHWKPTEEMEFAVMEAYHHQSTDAAAAFYVDVDARLVGATAAAPASAVYTARPDHGVWRA*