Gene Details:

Functional Descriptions:

  • COLD1 Confers Chilling Tolerance in Rice.
  • Here, we identify the quantitative trait locus COLD1 that confers chilling tolerance in japonica rice.
  • We further identify that a SNP in COLD1, SNP2, originated from Chinese Oryza rufipogon, is responsible for the ability of COLD(jap/ind) to confer chilling tolerance, supporting the importance of COLD1 in plant adaptation.
  • COLD1 encodes a regulator of G-protein signaling that localizes on plasma membrane and endoplasmic reticulum (ER).

Literature:

Gene Resources:

  • NCBI ID:
  • UniProt accessions:

Sequences:

cDNA Sequence
  • >LOC_Os04g51180.2 cDNA AGATCCATCTCCGGCTCCGGCGCCGGCGCGCGCGCGAGGCGTGGAGGTGGGGTGGGGGAGGGGGGAATGGGTTGGGGCGCGGTGGTGTACGGTGGCGGCGTGGTGGGGGCGTCGCTGGTGGGGCTCGGCTGGGCGGGGCTGTGGTTCCTCAACCGGCGGCTGTACAAGGAGTACGAGGAGCGGCGGGCGCTGGTGCAGATCCTCTTCGGCCTCGTCTTCGCCTTCTCCTGCAACCTCTTCCAGCTCGTCCTCTTCGAGATCCTCCCCGTCCTCTCCAAGCACGCCCGCTTCCTCAACTGGCACCTCGACCTCTTCTGCCTCATCCTCCTCCTCGTCTTCGTCCTCCCCTACTACCACTGCTACCTGCTGCTGCGCAACTCAGGGGTGCGGAGGGAGCGGGCTCTGCTCGTCGCGGCGCTGTTCCTGCTGGTCTTCCTCTATGGCTTCTGGCGCATGGGGATTCATTTCCCCATGCCTTCTCCGGAAAAAGGGTTTTTCACGATGCCCCAGTTGGTTAGTAGGATTGGCGTGATTGGAGTAAGTGTCATGGCTGTTCTTTCTGGTTTTGGTGCCGTCAATCTGCCTTACAGCTATCTGTCACTGTTTATCAGGGAAATTGATGAAAAGGACATCAAAACATTGGAAAGGCAGCTCATGCAATCCATGGAGACATGCATCGCTAAGAAAAAGAAAATTGTTCTGTCCAAAATGGAGATGGAGAGGATTCAAGGATCAGAAGAGAAGCTAAAAGCCAGATCATTTCTAAAGCGTATCGTTGGGACAGTTGTTCGATCTGTGCAAGAAGATCAAACTGAGCAGGATATCAAAAGCTTGGATGCAGAGGTCCAGGCACTAGAAGAACTTTCCAAACAACTATTTCTTGAGATATATGAACTCCGTCAAGCAAAGATAGCTGCTGCGTTTTCTCGAACTTGGAGAGGCCATGCTCAGAATCTACTAGGATATGCTTTGTCAGTGTATTGTGTTTATAAGATGCTCAAGTCCTTGCAGAGTGTTGTCTTTAAAGAGGTAAAATCACTTCTTTCCTTCGTCAAACTCAAACCAATTGCTTGTTTCTTTTTTCCTAATTCTGGAAATTTCCATTGTTAACCTACATACTATTTCCCCCCTTTCCAGGCAGGTTCTGTTGATCCAGTAACCATGACAATTACCATCTTCTTGAGGCATTTTGACATTGGTATTGATGTCACTCTTTTATCACAGGTACACATGCTAAAATTAAAAGGTGAACAATTCCAGAATCGAGAATAAATTCATTATTACTCTGAACTGCAGTTCTCTGTACATTTGATGTTAATTGGAACCGCTATGTAAGTTGTAAGCAATTTTCAAAATTCCCATAAAATAGGTATACAGATATTTTTTGGCATGTCCTTTGCGTTTTGGCTCTTTCCATAAAGTACCATATGTAGATTAAACATTAATTTTGAGGTGCTTTGAATTGGCTTGGTTTGACTTTCATGCAACCTGGTTACCTCCTTTCCTTTTTGCTTCTTTGTTCATGTTCTATAGCTTACATGTGTCCTGCCTGTTCACTTTTTGTTGCAGTATATATCTCTCATATTTATCGGGATGTTGGTTGTCATATCTGTTCGAGGTTTCTTGGCAAATGTTATGAAGGTGAGTTATTTCTTTCAGTTATCTATACATACAGCTGTTAGTTGTTACTGTACCCTTGTTAATAGAGCATTAGAACGCAATTCTATGGTGTCTCACTTTCTATGCAGTTCTTCTTTGCTGTTTCTAGAGTTGGGAGTGGTTCAACAACCAATGTTGTCCTTTTTCTATCTGAGATCATGGGAATGTACTTCATATCATCTATTCTTCTCATAAGGAAAAGCCTGGCAAATGAGTATAGGGTGATCATTACAGATGTTTTGGGTGGTGATATCCAGTTTGACTTTTACCACCGCTGGTTTGATGCTATATTTGTGGCTAGTGCATTTCTGTCCTTGCTTCTGATTTCTGCCCAATACACCTCCCGGCAAACAGACAAGCACCCAATTGATTGATGCTTTTGTACCATTTGTGCATAGTGTTCTTTTAACCACTTTGTCCAAGGTTGACCCATTCATTCTACCAGTTTCCAAAGGTTGTCGTTTCTCCATGGACTTCCATATACAGTTACAGAACATAATACATCAGTTAACTTGAAGGTGTCTCCTTGTTTTGGAGTATGTTTCCTGACGTTGAATCATGGTGAAACAGTTTCTCCATATGCAAGTCATTAGGAATGCTTTGCATCGTGATGATGCAGAACTGCAAATGGGGCCGGTTGTAATGTTGTGTCCACATGATAATTGTTTTTTGAAGACAAGAGGATGTCCTTTCTTAGGAATGAAGTATTGACTATGTAAAATAGCTTGAGAATAGCGTTGCTAGCATGATATGAAGTCGGTGTATCTCCCACAATTCTTTTTTGGCTATTACTACTACATGTGTAGTGTAACATTTGCCCAACTTCAAAAGGTAGATATTATTCATGTGACAGCAATCTCTTCGTTAGTACTCTCTCCATCAAAAAAAAAAAAGTACTCTCTCTATCAT
  • >LOC_Os04g51180.1 cDNA AGATCCATCTCCGGCTCCGGCGCCGGCGCGCGCGCGAGGCGTGGAGGTGGGGTGGGGGAGGGGGGAATGGGTTGGGGCGCGGTGGTGTACGGTGGCGGCGTGGTGGGGGCGTCGCTGGTGGGGCTCGGCTGGGCGGGGCTGTGGTTCCTCAACCGGCGGCTGTACAAGGAGTACGAGGAGCGGCGGGCGCTGGTGCAGATCCTCTTCGGCCTCGTCTTCGCCTTCTCCTGCAACCTCTTCCAGCTCGTCCTCTTCGAGATCCTCCCCGTCCTCTCCAAGCACGCCCGCTTCCTCAACTGGCACCTCGACCTCTTCTGCCTCATCCTCCTCCTCGTCTTCGTCCTCCCCTACTACCACTGCTACCTGCTGCTGCGCAACTCAGGGGTGCGGAGGGAGCGGGCTCTGCTCGTCGCGGCGCTGTTCCTGCTGGTCTTCCTCTATGGCTTCTGGCGCATGGGGATTCATTTCCCCATGCCTTCTCCGGAAAAAGGGTTTTTCACGATGCCCCAGTTGGTTAGTAGGATTGGCGTGATTGGAGTAAGTGTCATGGCTGTTCTTTCTGGTTTTGGTGCCGTCAATCTGCCTTACAGCTATCTGTCACTGTTTATCAGGGAAATTGATGAAAAGGACATCAAAACATTGGAAAGGCAGCTCATGCAATCCATGGAGACATGCATCGCTAAGAAAAAGAAAATTGTTCTGTCCAAAATGGAGATGGAGAGGATTCAAGGATCAGAAGAGAAGCTAAAAGCCAGATCATTTCTAAAGCGTATCGTTGGGACAGTTGTTCGATCTGTGCAAGAAGATCAAACTGAGCAGGATATCAAAAGCTTGGATGCAGAGGTCCAGGCACTAGAAGAACTTTCCAAACAACTATTTCTTGAGATATATGAACTCCGTCAAGCAAAGATAGCTGCTGCGTTTTCTCGAACTTGGAGAGGCCATGCTCAGAATCTACTAGGATATGCTTTGTCAGTGTATTGTGTTTATAAGATGCTCAAGTCCTTGCAGAGTGTTGTCTTTAAAGAGGTAAAATCACTTCTTTCCTTCGTCAAACTCAAACCAATTGCTTGTTTCTTTTTTCCTAATTCTGGAAATTTCCATTGTTAACCTACATACTATTTCCCCCCTTTCCAGGCAGGTTCTGTTGATCCAGTAACCATGACAATTACCATCTTCTTGAGGCATTTTGACATTGGTATTGATGTCACTCTTTTATCACAGGTACACATGCTAAAATTAAAAGGTGAACAATTCCAGAATCGAGAATAAATTCATTATTACTCTGAACTGCAGTTCTCTGTACATTTGATGTTAATTGGAACCGCTATGTAAGTTGTAAGCAATTTTCAAAATTCCCATAAAATAGGTATACAGATATTTTTTGGCATGTCCTTTGCGTTTTGGCTCTTTCCATAAAGTACCATATGTAGATTAAACATTAATTTTGAGGTGCTTTGAATTGGCTTGGTTTGACTTTCATGCAACCTGGTTACCTCCTTTCCTTTTTGCTTCTTTGTTCATGTTCTATAGCTTACATGTGTCCTGCCTGTTCACTTTTTGTTGCAGTATATATCTCTCATATTTATCGGGATGTTGGTTGTCATATCTGTTCGAGGTTTCTTGGCAAATGTTATGAAGGTGAGTTATTTCTTTCAGTTATCTATACATACAGCTGTTAGTTGTTACTGTACCCTTGTTAATAGAGCATTAGAACGCAATTCTATGGTGTCTCACTTTCTATGCAGTTCTTCTTTGCTGTTTCTAGAGTTGGGAGTGGTTCAACAACCAATGTTGTCCTTTTTCTATCTGAGATCATGGGAATGTACTTCATATCATCTATTCTTCTCATAAGGAAAAGCCTGGCAAATGAGTATAGGGTGATCATTACAGATGTTTTGGGTGGTGATATCCAGTTTGACTTTTACCACCGCTGGTTTGATGCTATATTTGTGGCTAGTGCATTTCTGTCCTTGCTTCTGATTTCTGCCCAATACACCTCCCGGCAAACAGACAAGCACCCAATTGATTGATGCTTTTGTACCATTTGTGCATAGTGTTCTTTTAACCACTTTGTCCAAGGTTGACCCATTCATTCTACCAGTTTCCAAAGGTTGTCGTTTCTCCATGGACTTCCATATACAGTTACAGAACATAATACATCAGTTAACTTGAAGGTGTCTCCTTGTTTTGGAGTATGTTTCCTGACGTTGAATCATGGTGAAACAGTTTCTCCATATGCAAGTCATTAGGAATGCTTTGCATCGTGATGATGCAGAACTGCAAATGGGGCCGGTTGTAATGTTGTGTCCACATGATAATTGTTTTTTGAAGACAAGAGGATGTCCTTTCTTAGGAATGAAGTATTGACTATGTAAAATAGCTTGAGAATAGCGTTGCTAGCATGATATGAAGTCGGTGTATCTCCCACAATTCTTTTTTGGCTATTACTACTACATGTGTAGTGTAACATTTGCCCAACTTCAAAAGGTAGATATTATTCATGTGACAGCAATCTCTTCGTTAGTACTCTCTCCATCAAAAAAAAAAAAGTACTCTCTCTATCAT
CDS Sequence
  • >LOC_Os04g51180.2 CDS ATGGGTTGGGGCGCGGTGGTGTACGGTGGCGGCGTGGTGGGGGCGTCGCTGGTGGGGCTCGGCTGGGCGGGGCTGTGGTTCCTCAACCGGCGGCTGTACAAGGAGTACGAGGAGCGGCGGGCGCTGGTGCAGATCCTCTTCGGCCTCGTCTTCGCCTTCTCCTGCAACCTCTTCCAGCTCGTCCTCTTCGAGATCCTCCCCGTCCTCTCCAAGCACGCCCGCTTCCTCAACTGGCACCTCGACCTCTTCTGCCTCATCCTCCTCCTCGTCTTCGTCCTCCCCTACTACCACTGCTACCTGCTGCTGCGCAACTCAGGGGTGCGGAGGGAGCGGGCTCTGCTCGTCGCGGCGCTGTTCCTGCTGGTCTTCCTCTATGGCTTCTGGCGCATGGGGATTCATTTCCCCATGCCTTCTCCGGAAAAAGGGTTTTTCACGATGCCCCAGTTGGTTAGTAGGATTGGCGTGATTGGAGTAAGTGTCATGGCTGTTCTTTCTGGTTTTGGTGCCGTCAATCTGCCTTACAGCTATCTGTCACTGTTTATCAGGGAAATTGATGAAAAGGACATCAAAACATTGGAAAGGCAGCTCATGCAATCCATGGAGACATGCATCGCTAAGAAAAAGAAAATTGTTCTGTCCAAAATGGAGATGGAGAGGATTCAAGGATCAGAAGAGAAGCTAAAAGCCAGATCATTTCTAAAGCGTATCGTTGGGACAGTTGTTCGATCTGTGCAAGAAGATCAAACTGAGCAGGATATCAAAAGCTTGGATGCAGAGGTCCAGGCACTAGAAGAACTTTCCAAACAACTATTTCTTGAGATATATGAACTCCGTCAAGCAAAGATAGCTGCTGCGTTTTCTCGAACTTGGAGAGGCCATGCTCAGAATCTACTAGGATATGCTTTGTCAGTGTATTGTGTTTATAAGATGCTCAAGTCCTTGCAGAGTGTTGTCTTTAAAGAGGTAAAATCACTTCTTTCCTTCGTCAAACTCAAACCAATTGCTTGTTTCTTTTTTCCTAATTCTGGAAATTTCCATTGTTAA
  • >LOC_Os04g51180.1 CDS ATGGGTTGGGGCGCGGTGGTGTACGGTGGCGGCGTGGTGGGGGCGTCGCTGGTGGGGCTCGGCTGGGCGGGGCTGTGGTTCCTCAACCGGCGGCTGTACAAGGAGTACGAGGAGCGGCGGGCGCTGGTGCAGATCCTCTTCGGCCTCGTCTTCGCCTTCTCCTGCAACCTCTTCCAGCTCGTCCTCTTCGAGATCCTCCCCGTCCTCTCCAAGCACGCCCGCTTCCTCAACTGGCACCTCGACCTCTTCTGCCTCATCCTCCTCCTCGTCTTCGTCCTCCCCTACTACCACTGCTACCTGCTGCTGCGCAACTCAGGGGTGCGGAGGGAGCGGGCTCTGCTCGTCGCGGCGCTGTTCCTGCTGGTCTTCCTCTATGGCTTCTGGCGCATGGGGATTCATTTCCCCATGCCTTCTCCGGAAAAAGGGTTTTTCACGATGCCCCAGTTGGTTAGTAGGATTGGCGTGATTGGAGTAAGTGTCATGGCTGTTCTTTCTGGTTTTGGTGCCGTCAATCTGCCTTACAGCTATCTGTCACTGTTTATCAGGGAAATTGATGAAAAGGACATCAAAACATTGGAAAGGCAGCTCATGCAATCCATGGAGACATGCATCGCTAAGAAAAAGAAAATTGTTCTGTCCAAAATGGAGATGGAGAGGATTCAAGGATCAGAAGAGAAGCTAAAAGCCAGATCATTTCTAAAGCGTATCGTTGGGACAGTTGTTCGATCTGTGCAAGAAGATCAAACTGAGCAGGATATCAAAAGCTTGGATGCAGAGGTCCAGGCACTAGAAGAACTTTCCAAACAACTATTTCTTGAGATATATGAACTCCGTCAAGCAAAGATAGCTGCTGCGTTTTCTCGAACTTGGAGAGGCCATGCTCAGAATCTACTAGGATATGCTTTGTCAGTGTATTGTGTTTATAAGATGCTCAAGTCCTTGCAGAGTGTTGTCTTTAAAGAGGTAAAATCACTTCTTTCCTTCGTCAAACTCAAACCAATTGCTTGTTTCTTTTTTCCTAATTCTGGAAATTTCCATTGTTAA
Protein Sequence
  • >LOC_Os04g51180.2 protein MGWGAVVYGGGVVGASLVGLGWAGLWFLNRRLYKEYEERRALVQILFGLVFAFSCNLFQLVLFEILPVLSKHARFLNWHLDLFCLILLLVFVLPYYHCYLLLRNSGVRRERALLVAALFLLVFLYGFWRMGIHFPMPSPEKGFFTMPQLVSRIGVIGVSVMAVLSGFGAVNLPYSYLSLFIREIDEKDIKTLERQLMQSMETCIAKKKKIVLSKMEMERIQGSEEKLKARSFLKRIVGTVVRSVQEDQTEQDIKSLDAEVQALEELSKQLFLEIYELRQAKIAAAFSRTWRGHAQNLLGYALSVYCVYKMLKSLQSVVFKEVKSLLSFVKLKPIACFFFPNSGNFHC*
  • >LOC_Os04g51180.1 protein MGWGAVVYGGGVVGASLVGLGWAGLWFLNRRLYKEYEERRALVQILFGLVFAFSCNLFQLVLFEILPVLSKHARFLNWHLDLFCLILLLVFVLPYYHCYLLLRNSGVRRERALLVAALFLLVFLYGFWRMGIHFPMPSPEKGFFTMPQLVSRIGVIGVSVMAVLSGFGAVNLPYSYLSLFIREIDEKDIKTLERQLMQSMETCIAKKKKIVLSKMEMERIQGSEEKLKARSFLKRIVGTVVRSVQEDQTEQDIKSLDAEVQALEELSKQLFLEIYELRQAKIAAAFSRTWRGHAQNLLGYALSVYCVYKMLKSLQSVVFKEVKSLLSFVKLKPIACFFFPNSGNFHC*