Gene Details:
- MSU gene ID: LOC_Os04g53060
- RAPdb gene ID: Os04g0621900
- Gene Symbol: RGAe Hwc3
- Genome: MSU7 , IRGSP-1.0
- Species: Oryza sativa
Functional Descriptions:
- A 4-kb DNA fragment from ‘CH7’ containing the Hwc3 gene with the inserted LTR retrotransposon was able to induce hybrid weakness in hybrids with ‘CH8’ plants carrying the Hwc1 gene by genetic complementation.
Function-related keywords:
Literature:
- A novel discovery of a long terminal repeat retrotransposon-induced hybrid weakness in rice . DOI: 10.1093/jxb/ery442 ; PMID: 30576523
- Multiple Alleles Encoding Atypical NLRs with Unique Central Tandem Repeats in Rice Confer Resistance to Xanthomonas oryzae pv. oryzae . DOI: 10.1016/j.xplc.2020.100088 ; PMID: 33367251
Related News:
Gene Resources:
- NCBI ID: AK288361
- UniProt accessions:
Sequences:
cDNA Sequence
- >LOC_Os04g53060.1 cDNA ATGGGGGACTTGAATTCCAGTTTAAGGGTCCTGAAGATTGAACAGTGCCCTGTTCTGAAGGTCTTTCCACTGTTTCAGAACTCCCAGCAATTTAAAATCGAGCGAATGTCATGGTTGTCTAGTCTTACCAAGCTTACCATCAATGATTGTCCTCATTTGCATGTGCACAATCCTCTTCCGCCTTCAACTATTGTTTCGGAATTATTTATCGCTGGAGTTTCAACACTTCCAAGGGTGGAGGGGTCATCCCACGGAACATTAAGAATTGGACGTCATCCTAATGATATTTTCAGTTTTGATTCCGATGATATTTTAGAGCTAATGATATTGGATGATAAATCTCTATCATTCCATAGCTTGAGGTCCCTAACTAGATTGGTAATAGATGGTTGCAAAAACCTTATGTCTGTTTTATTTGAAAGTTTAAGGCAACTCTTGCGTTTGAAGAGTTTGGGGATATACAACTGCCCACAACTTTTCTCTTCAAATGTCCCATCGGAGCTTACCAGTGAAGACACGACAGGTGCAAATCGCAACGCCCTCCCTTCTCTCGAATGTCTTGATATTGCTTCTTGTGGAATTAATGGGAAGTGGCTATCTCTGATGCTGCAACATGCGGAGGTCCTACAGAAATTGAGTATAACCTCGTGTTGGCAGATAAGAGGGCTATCAATAGGAGAGGAAGAAAATGGTCATCCAAATCTTATGTCAGCTACAGAGGCTTCGTCGTCAGGATATCCAAGTCGAGACGAACTTTTGCACCTTCCATTAAATCTCATCCCATCTCTGAAGAAGGTAACTATTAGATTCTGCAGTTTAAGATTTTATGGAAACAAGGAAGGTTTCGCTAGATTTACCTTCCTTGAGGGCATAGCAATTTCGCGATGCCCTGAGCTGATCTCGTCCTTGGTGCATAACAACAGAAAGGATGAGCAGGTGAACGGAAGATGGCTCCTCCCGCCATCAATTGTAGAACTTGAGATTCAAGATGATAATTATCTACAAATGTTGCAGCCCTGCTTTCCAGGGAGCCTCACCCACCTGAAAAGACTACAAGTACAGGGAAACCCAAATTTAACATCTCTGCAGCTGCATTCCTGCACAGAGCTCCAAGAGTTGATAATTCAAAGCTGTAGGTCACTTAATTCTCTACAAGGCTTGCAATCACTCTGCAACCTCAGGTTGCTGCGGGCATACAGATGCCTCGGCGATCTTGGAGGAGATGAAAGGTGTCTCCTTCCGCAATCAATTGAGGAACTTGATATCGACGAGTATTTTCAAGAAACTCTGCAGCCATTCTTTCCAAGGAATCTCACCTGCCTAAAAAAATTACGAGTATCAGGCACTACAAGTTTTAAATCTCTAGAACTGATGTCATGCACTGCACTCGAACATTTGAAGATTGAAGGTTGTGCATCGCTTGCTACATTAGTGGGCTTGCAATCCCTCCACAGCCTCAGGCATTTGGAAGTATTTAGATGCCCTAGCTTGCCTCTATGTTTGGAGAGTTTGTCAGGGCAGGGCTATGAGCTATGCCCTCGATTGGAAAGGCTCCAGATCGATGACCTCTCTATCCTTACTACGTCGCTCTGCCAGCACCTCATCTCAGTCCAATTCCTAGAGCTTTACGGAGATCCATACCTTTACATTCGTGGAGTCGAAGTGGCAAGACTAACGGATGAGCAAGAGAGAGCGCTTCAGCTCCTCACGTCCTTGCAAGAGCTCCAATTCAAGTCTCATGACAGTCTTGTAGATCTTCCTACAGGGCTGCATAACCTTCCTTCCCTCAAGAGGTTGAAGATCGATAATTGCAAGAGCATCATGAGGCTGCCAGAGAAGGGTCTCCCACCTTCGTTGGAAGAATTGCATATCAGCAATTGCAGCAAAGAGCTAGCTGACCATTGCAGAATGCTAGAAAGCAAGCTGATGGTATCAACTGATTGATGATGAATATGTGGATTAATTATTGGGTGGCTTGATAAGCACACCTTTTTCCACCAGCCCAAATGATACCGGCAGTTCGGCACACACCTTTCTAAGCTATACATTTAGGAGTAAGTATTTTCTGTTAAGACGTTCAAGCTGCTATACATATCACCGCCGCAGTGACCTGTTCAGGACCATTTCAAGGGGAAAATATGTAAGGCAAATTATATATGTAGTGAAAACGTGAAAACTACCGTTGGATCCATAAATGGATGTTTGATATTTGTCCATGTCACTAAAAGTAAAAAAAAAAAAACTCCCAGATTCAACTATGAGTAAAAATTTTATTGGGAGTAAAATTTGTACTATTGATGATATGGACAAATATTAGATGTTCATTTTTAAATCCAACAATAGTTTTTAGGTTTCCTCTGTATACGTGGTTGGCACTGTATATTTTCCTCCATTTCAAGTGCCATATAACTACATGTTGTTTCTCTGGATCAACTTTTTTTAAGGAAAAATATTGTAGGAGAGTATCCTACAGCGTGTGTGTCCATATAGTAAATTTGTTTGGTGCTCCATGGTGCCTGGGCACCATGATTGAAATTGAGTATATACCCAATTCAAATGAGTATGAAATTTTTTTAAATGTTTAGGTATTAACATTAACTACTTTACTAACTAGTTCAAAACAAGTTTGAACTGAATTTAAACATGTTTTTGTTAGATTTTGAATCTAGGTATATAGCATCCAAACATAAAATTAGTTAGGTATGTAAGATCATTAAAATTGTATCTTCCATATCACATCCTTCTATATTTTAATAATATCTTCCAACTAACTTTACATTTGTATTTGAAGGGATATATTTTGAATGACTTAATTTAACGGTGTTATTTATCACGATAATATTTAGAAATGAGTAAATTTTAACGGATATATTTAAAATGAGTATAAAAGCAATGCAAGTAACATCTACTACTATATTTATTCTCTACTAGTACTACTGCTGAACTATTCCTTCTCTCTTCTACTAGTACTACTACTCTACATCGAGGGAGCGGTGGCGANGGGGCNGGGTCNGGGCNGGGAGAGGGACGGGGACGGCATGGCCANGGCNGGGTGAGGGGCCGGTGATGGTCGGGCNGGGCGAGGGGCGGCNGGGACGGNACAACCGGAGAGGGCGTGGGAGAAGCTACGAGCGGCAACGATGCCTGGGACGGCGGGGGCAAAGCTGCGGGCGGCGGCGATGGCTGGGACGGCCGAGCGGCGGGGGCGACGGCGGGCGCGGGCCTCTCCGCCAAATCCGCTGCCTTTCCACCTACACCAGCGATCTCCACCGCGAGTTCCGGTACACACCTCCTTTCTTCCGTCACTTCCAGTAGTCTTGATGGTGGCATAAGTTGGATTGGAACATGGGTAGTTGGAGGATGACGTGAGGAGAGAGAACCGCCATATTTGGCTTGTGAAGGTCTCCGTTTGGAGGACCTCCAAATATGGCGTGTGTGATGGAGCCTCTGCTGGCCCCTTTTTCCCCTTCTATACGCCAAAAATGGGATGGAGGACGGGATAGCGCTACTGCTGGGGATGCTCTAAGAGACTTGCTCCGGCCCGGTACCAAATCGTTTCCAAACGTTGGATCTAACTGGGCAGGATAGATATTTTTAGATCCAACGATTGGAAACGATTTGGTATCATGAGGTACTGATACTTCAAGGTACTTTTTGATGGACCGGAGCAAATCTCAACAATACAACTGCATTGAGAAGAATAGACAGCCACTTCTTCAGATCAGAAAGCCTGGTGAACTACCAGTCAGTAAATGGCTACCGTAATCTCCACTTTTCACTTATATGTACAAAGGACACCTGCACTATCAGAACACCCACAAAGCCAGTTCACTCACTACAAACTATCTTGACTAAATCCAAGCAGATACCGACTCCTCTTAGGCCTTGTTTAGATTTCAACTTTTTTCTTCAAACTTTCAACTTTTTCGTCACATCGAACTTTTCTACACACGTAAACTTCCAACTTTTCCGTCATATCGTTCCAATTTCTTCAAACTTCCAATTTTGGCGTGGAAAAACACACCCTTAATCAACTTACAAAACACCAACACTTTGGTGTATCCACAGCACCAATCACACAAGGAAATTTACCATCCACCTACTCGTATCCTACTGTTAGATTGGCCACCTTACACCAGAGAAAGGGCATTGCCAAATTCTGAGACGCTGTCCTTTGAGCTCCCCGAATCTGAACAAATAACATAAATCAGATAGAACACAACACAAAAATTTCCATTCATCAAGAAGTTGGTTGTTCTAATTATAAAGTGGCAGTGATGAGGACCCACCGCTCGCGACCTCAGTATCCTTCTCAATCTCCACTGATTGGTAAGTTGCTGTTGGCATTTTTTTCGCCGGGCCGGCGAATAACCGGCCGATGTATATTAAGAGAAAGAGTTGCTGTTGGCATTTCATCCCCGATATCTACATACTCATCCAACTGCTCGGCCTGTGTAGTGATCTTGTCA
CDS Sequence
- >LOC_Os04g53060.1 CDS ATGGGGGACTTGAATTCCAGTTTAAGGGTCCTGAAGATTGAACAGTGCCCTGTTCTGAAGGTCTTTCCACTGTTTCAGAACTCCCAGCAATTTAAAATCGAGCGAATGTCATGGTTGTCTAGTCTTACCAAGCTTACCATCAATGATTGTCCTCATTTGCATGTGCACAATCCTCTTCCGCCTTCAACTATTGTTTCGGAATTATTTATCGCTGGAGTTTCAACACTTCCAAGGGTGGAGGGGTCATCCCACGGAACATTAAGAATTGGACGTCATCCTAATGATATTTTCAGTTTTGATTCCGATGATATTTTAGAGCTAATGATATTGGATGATAAATCTCTATCATTCCATAGCTTGAGGTCCCTAACTAGATTGGTAATAGATGGTTGCAAAAACCTTATGTCTGTTTTATTTGAAAGTTTAAGGCAACTCTTGCGTTTGAAGAGTTTGGGGATATACAACTGCCCACAACTTTTCTCTTCAAATGTCCCATCGGAGCTTACCAGTGAAGACACGACAGGTGCAAATCGCAACGCCCTCCCTTCTCTCGAATGTCTTGATATTGCTTCTTGTGGAATTAATGGGAAGTGGCTATCTCTGATGCTGCAACATGCGGAGGTCCTACAGAAATTGAGTATAACCTCGTGTTGGCAGATAAGAGGGCTATCAATAGGAGAGGAAGAAAATGGTCATCCAAATCTTATGTCAGCTACAGAGGCTTCGTCGTCAGGATATCCAAGTCGAGACGAACTTTTGCACCTTCCATTAAATCTCATCCCATCTCTGAAGAAGGTAACTATTAGATTCTGCAGTTTAAGATTTTATGGAAACAAGGAAGGTTTCGCTAGATTTACCTTCCTTGAGGGCATAGCAATTTCGCGATGCCCTGAGCTGATCTCGTCCTTGGTGCATAACAACAGAAAGGATGAGCAGGTGAACGGAAGATGGCTCCTCCCGCCATCAATTGTAGAACTTGAGATTCAAGATGATAATTATCTACAAATGTTGCAGCCCTGCTTTCCAGGGAGCCTCACCCACCTGAAAAGACTACAAGTACAGGGAAACCCAAATTTAACATCTCTGCAGCTGCATTCCTGCACAGAGCTCCAAGAGTTGATAATTCAAAGCTGTAGGTCACTTAATTCTCTACAAGGCTTGCAATCACTCTGCAACCTCAGGTTGCTGCGGGCATACAGATGCCTCGGCGATCTTGGAGGAGATGAAAGGTGTCTCCTTCCGCAATCAATTGAGGAACTTGATATCGACGAGTATTTTCAAGAAACTCTGCAGCCATTCTTTCCAAGGAATCTCACCTGCCTAAAAAAATTACGAGTATCAGGCACTACAAGTTTTAAATCTCTAGAACTGATGTCATGCACTGCACTCGAACATTTGAAGATTGAAGGTTGTGCATCGCTTGCTACATTAGTGGGCTTGCAATCCCTCCACAGCCTCAGGCATTTGGAAGTATTTAGATGCCCTAGCTTGCCTCTATGTTTGGAGAGTTTGTCAGGGCAGGGCTATGAGCTATGCCCTCGATTGGAAAGGCTCCAGATCGATGACCTCTCTATCCTTACTACGTCGCTCTGCCAGCACCTCATCTCAGTCCAATTCCTAGAGCTTTACGGAGATCCATACCTTTACATTCGTGGAGTCGAAGTGGCAAGACTAACGGATGAGCAAGAGAGAGCGCTTCAGCTCCTCACGTCCTTGCAAGAGCTCCAATTCAAGTCTCATGACAGTCTTGTAGATCTTCCTACAGGGCTGCATAACCTTCCTTCCCTCAAGAGGTTGAAGATCGATAATTGCAAGAGCATCATGAGGCTGCCAGAGAAGGGTCTCCCACCTTCGTTGGAAGAATTGCATATCAGCAATTGCAGCAAAGAGCTAGCTGACCATTGCAGAATGCTAGAAAGCAAGCTGATGGTATCAACTGATTGA
Protein Sequence
- >LOC_Os04g53060.1 protein MGDLNSSLRVLKIEQCPVLKVFPLFQNSQQFKIERMSWLSSLTKLTINDCPHLHVHNPLPPSTIVSELFIAGVSTLPRVEGSSHGTLRIGRHPNDIFSFDSDDILELMILDDKSLSFHSLRSLTRLVIDGCKNLMSVLFESLRQLLRLKSLGIYNCPQLFSSNVPSELTSEDTTGANRNALPSLECLDIASCGINGKWLSLMLQHAEVLQKLSITSCWQIRGLSIGEEENGHPNLMSATEASSSGYPSRDELLHLPLNLIPSLKKVTIRFCSLRFYGNKEGFARFTFLEGIAISRCPELISSLVHNNRKDEQVNGRWLLPPSIVELEIQDDNYLQMLQPCFPGSLTHLKRLQVQGNPNLTSLQLHSCTELQELIIQSCRSLNSLQGLQSLCNLRLLRAYRCLGDLGGDERCLLPQSIEELDIDEYFQETLQPFFPRNLTCLKKLRVSGTTSFKSLELMSCTALEHLKIEGCASLATLVGLQSLHSLRHLEVFRCPSLPLCLESLSGQGYELCPRLERLQIDDLSILTTSLCQHLISVQFLELYGDPYLYIRGVEVARLTDEQERALQLLTSLQELQFKSHDSLVDLPTGLHNLPSLKRLKIDNCKSIMRLPEKGLPPSLEELHISNCSKELADHCRMLESKLMVSTD*