Gene Details:
- MSU gene ID: LOC_Os04g59570
- RAPdb gene ID: Os04g0692200
- Gene Symbol: YSS1
- Genome: MSU7 , IRGSP-1.0
- Species: Oryza sativa
Functional Descriptions:
- Furthermore, levels of chloroplast proteins are mostly reduced in YSS1 seedlings.
- Together, our findings identify YSS1 as a novel regulator of PEP activity essential for chloroplast development at rice seedling stage.
- YSS1 encodes a chloroplast nucleoid-localized protein belonging to the DUF3727 superfamily.
Function-related keywords:
Literature:
- Young Seedling Stripe1 encodes a chloroplast nucleoid-associated protein required for chloroplast development in rice seedlings . DOI: 10.1007/s00425-016-2590-7 ; PMID: 27578095
Related News:
Gene Resources:
- NCBI ID: NM_001060901.1
- UniProt accessions:
Sequences:
cDNA Sequence
- >LOC_Os04g59570.1 cDNA CTCGAGTCCTCCCCCACAGCAGCAGCTGCTTGTACCTATCCTCCACCACCACCAGCAGCGAGTCATGGCGGCCATGGCGATGGTGTCCGTGCAACTCACAGTCGCGGCGAGGCCCCTGCGCTCCCGCCGCGCGCTCTCCGTCTTCACCTGCGCCGCACCCCCGAGGCAGCGGCCTCCTCCAGGCCCAACCAAGCACCGCCGCCTCCGCCACGACGCCGACGCGCAGCCTCCCAGGAAGCGAGGTCATCCTCCTCCTCCTCCTCCCAGGCGCACCCGCACCCGGGGCCCTCCCGCTCGCCCCCAACAATCCTACACTGACGACGACGAGGAAGAGGACGACCAAGACGAGGAGGAGGGGAGCTTCGGTGGGGGCACCCGGGCTGCCGCCATGCCCAAGCCGCCAGCGGGCTTCGTGCTGGACGACCAGGGAAGGTGCATCGCCGCCGCCTCCAAGCGCATCGTCACCATCATTGATGACACCAACAACCGGCCCTTGGAGTGCATCATCAGGAGGGTGTTCCGAAGCACGCTAGACCACGACTGCATGCTCCTTTGCCCAGTTGACATGCCTGTGCAGGTCCTTAAGAGTGCCAATTTCAGTGGCTGGATTGCTGTTGATGATGACCAGATTAAGGAAATCATTCCATCCGTTGCATATGCCCTCGCTAGAGTGCATATGCACTTTGTAGAGAGTGGATTTTGTTATACAGCACGGGGTGGCTTTTGCTTTCCTGAAGACGCGATTCAAGAATTTCATGATTCTGGTGACGGCGGTGATAGTGTACCTTTTGAAGGTGTAGAGATTTGTTGTTTCAATTTGGATGGCGCACATTATATGATTTATACACCAGTTGATCCTCTTCTGTTCGTTGCAGTGAAGGATAAAGATGGCGTGCTACGCATTGCTGAAGATGAACTCATGGACGACCCTGCTGTTGTCGGTGCCATAGACGAAGAGACAGAATTCACAGCTTTGGTGGAGGAGGAAGAGGCCCTTCTTGAATCGGTGCTGGGTGAAAGATGACCATGCCGCGGCCTGTATTGATGGTCGATCAGAGGCGGAGACTGCAATGGTGGGCGTCCATCGATCATCATTCCCACCCACCAATTAAGTAGCAGAAGCAAGCTCCCCGCAAAAAAAAAAAAAAAAAAAAAAAAAAGAAGGTAGCAGAAGCAAGCTAAGATAGACTGCGAGAAGATTTGTACTACAACCAACAATAGGGATATATATAGAATGGAGCACTGTGATGTTAGATGTGCAAAGTAGCTTGAACTAGGGACTCATATTAAGCTGCTTCTCTCCGATGAAGCTTGCAAACTCAGTCTGTTGTTCTTGCTGGCCTCGCATGATGGTGATCTTGCACTTGTTTAGGGGTACTAGTACCATAGCCCTTCTTGGGGAGGGAGT
- >LOC_Os04g59570.2 cDNA CTCGAGTCCTCCCCCACAGCAGCAGCTGCTTGTACCTATCCTCCACCACCACCAGCAGCGAGTCATGGCGGCCATGGCGATGGTGTCCGTGCAACTCACAGTCGCGGCGAGGCCCCTGCGCTCCCGCCGCGCGCTCTCCGTCTTCACCTGCGCCGCACCCCCGAGGCAGCGGCCTCCTCCAGGCCCAACCAAGCACCGCCGCCTCCGCCACGACGCCGACGCGCAGCCTCCCAGGAAGCGAGGTCATCCTCCTCCTCCTCCTCCCAGGCGCACCCGCACCCGGGGCCCTCCCGCTCGCCCCCAACAATCCTACACTGACGACGACGAGGAAGAGGACGACCAAGACGAGGAGGAGGGGAGCTTCGGTGGGGGCACCCGGGCTGCCGCCATGCCCAAGCCGCCAGCGGGCTTCGTGCTGGACGACCAGGGAAGGTGCATCGCCGCCGCCTCCAAGCGCATCGTCACCATCATTGATGACACCAACAACCGGCCCTTGGAGTGCATCATCAGGAGGGTGTTCCGAAGCACGCTAGACCACGACTGCATGCTCCTTTGCCCAGTTGACATGCCTGTGCAGGTCCTTAAGAGTGCCAATTTCAGTGGCTGGATTGCTGTTGATGATGACCAGATTAAGGAAATCATTCCATCCGTTGCATATGCCCTCGCTAGAGTGCATATGCACTTTGTAGAGAGTGGATTTTGTTATACAGCACGGGGTGGCTTTTGCTTTCCTGAAGACGCGATTCAAGAATTTCATGATTCTGGTGACGGCGGTGATAGTGTACCTTTTGAAGGTGTAGAGATTTGTTGTTTCAATTTGGATGGCGCACATTATATGATTTATACACCAGTTGATCCTCTTCTGTTCGTTGCAGTGAAGGATAAAGATGGCGTGCTACGCATTGCTGAAGATGAACTCATGGACGACCCTGCTGTTGTCGGTGCCATAGACGAAGAGACAGAATTCACAGCTTTGGTGGAGGAGGAAGAGGCCCTTCTTGAATCGGTGCTGGGTGAAAGATGACCATGCCGCGGCCTGTATTGATGGTCGATCAGAGGCGGAGACTGCAATGGTGGGCGTCCATCGATCATCATTCCCACCCACCAATTAAGTAGCAGAAGCAAGCTCCCCGCAAAAAAAAAAAAAAAAAAAAAAAAAAGAAGGTAGCAGAAGCAAGCTAAGATAGACTGCGAGAAGATTTGTACTACAACCAACAATAGGGATATATATAGAATGGAGCACTGTGATGTTAGATGTGCAAAGTAGCTTGAACTAGGGACTCATATTAAGCTGCTTCTCTCCGATGAAGCTTGCAAACTCAGTCTGTTGTTCTTGCTGGCCTCGCATGATGGTGATCTTGCACTTGTTTAGGGGTACTAGTACCATAGCCCTTCTTGGGGAGGGAGT
CDS Sequence
- >LOC_Os04g59570.1 CDS ATGGCGGCCATGGCGATGGTGTCCGTGCAACTCACAGTCGCGGCGAGGCCCCTGCGCTCCCGCCGCGCGCTCTCCGTCTTCACCTGCGCCGCACCCCCGAGGCAGCGGCCTCCTCCAGGCCCAACCAAGCACCGCCGCCTCCGCCACGACGCCGACGCGCAGCCTCCCAGGAAGCGAGGTCATCCTCCTCCTCCTCCTCCCAGGCGCACCCGCACCCGGGGCCCTCCCGCTCGCCCCCAACAATCCTACACTGACGACGACGAGGAAGAGGACGACCAAGACGAGGAGGAGGGGAGCTTCGGTGGGGGCACCCGGGCTGCCGCCATGCCCAAGCCGCCAGCGGGCTTCGTGCTGGACGACCAGGGAAGGTGCATCGCCGCCGCCTCCAAGCGCATCGTCACCATCATTGATGACACCAACAACCGGCCCTTGGAGTGCATCATCAGGAGGGTGTTCCGAAGCACGCTAGACCACGACTGCATGCTCCTTTGCCCAGTTGACATGCCTGTGCAGGTCCTTAAGAGTGCCAATTTCAGTGGCTGGATTGCTGTTGATGATGACCAGATTAAGGAAATCATTCCATCCGTTGCATATGCCCTCGCTAGAGTGCATATGCACTTTGTAGAGAGTGGATTTTGTTATACAGCACGGGGTGGCTTTTGCTTTCCTGAAGACGCGATTCAAGAATTTCATGATTCTGGTGACGGCGGTGATAGTGTACCTTTTGAAGGTGTAGAGATTTGTTGTTTCAATTTGGATGGCGCACATTATATGATTTATACACCAGTTGATCCTCTTCTGTTCGTTGCAGTGAAGGATAAAGATGGCGTGCTACGCATTGCTGAAGATGAACTCATGGACGACCCTGCTGTTGTCGGTGCCATAGACGAAGAGACAGAATTCACAGCTTTGGTGGAGGAGGAAGAGGCCCTTCTTGAATCGGTGCTGGGTGAAAGATGA
- >LOC_Os04g59570.2 CDS ATGGCGGCCATGGCGATGGTGTCCGTGCAACTCACAGTCGCGGCGAGGCCCCTGCGCTCCCGCCGCGCGCTCTCCGTCTTCACCTGCGCCGCACCCCCGAGGCAGCGGCCTCCTCCAGGCCCAACCAAGCACCGCCGCCTCCGCCACGACGCCGACGCGCAGCCTCCCAGGAAGCGAGGTCATCCTCCTCCTCCTCCTCCCAGGCGCACCCGCACCCGGGGCCCTCCCGCTCGCCCCCAACAATCCTACACTGACGACGACGAGGAAGAGGACGACCAAGACGAGGAGGAGGGGAGCTTCGGTGGGGGCACCCGGGCTGCCGCCATGCCCAAGCCGCCAGCGGGCTTCGTGCTGGACGACCAGGGAAGGTGCATCGCCGCCGCCTCCAAGCGCATCGTCACCATCATTGATGACACCAACAACCGGCCCTTGGAGTGCATCATCAGGAGGGTGTTCCGAAGCACGCTAGACCACGACTGCATGCTCCTTTGCCCAGTTGACATGCCTGTGCAGGTCCTTAAGAGTGCCAATTTCAGTGGCTGGATTGCTGTTGATGATGACCAGATTAAGGAAATCATTCCATCCGTTGCATATGCCCTCGCTAGAGTGCATATGCACTTTGTAGAGAGTGGATTTTGTTATACAGCACGGGGTGGCTTTTGCTTTCCTGAAGACGCGATTCAAGAATTTCATGATTCTGGTGACGGCGGTGATAGTGTACCTTTTGAAGGTGTAGAGATTTGTTGTTTCAATTTGGATGGCGCACATTATATGATTTATACACCAGTTGATCCTCTTCTGTTCGTTGCAGTGAAGGATAAAGATGGCGTGCTACGCATTGCTGAAGATGAACTCATGGACGACCCTGCTGTTGTCGGTGCCATAGACGAAGAGACAGAATTCACAGCTTTGGTGGAGGAGGAAGAGGCCCTTCTTGAATCGGTGCTGGGTGAAAGATGA
Protein Sequence
- >LOC_Os04g59570.1 protein MAAMAMVSVQLTVAARPLRSRRALSVFTCAAPPRQRPPPGPTKHRRLRHDADAQPPRKRGHPPPPPPRRTRTRGPPARPQQSYTDDDEEEDDQDEEEGSFGGGTRAAAMPKPPAGFVLDDQGRCIAAASKRIVTIIDDTNNRPLECIIRRVFRSTLDHDCMLLCPVDMPVQVLKSANFSGWIAVDDDQIKEIIPSVAYALARVHMHFVESGFCYTARGGFCFPEDAIQEFHDSGDGGDSVPFEGVEICCFNLDGAHYMIYTPVDPLLFVAVKDKDGVLRIAEDELMDDPAVVGAIDEETEFTALVEEEEALLESVLGER*
- >LOC_Os04g59570.2 protein MAAMAMVSVQLTVAARPLRSRRALSVFTCAAPPRQRPPPGPTKHRRLRHDADAQPPRKRGHPPPPPPRRTRTRGPPARPQQSYTDDDEEEDDQDEEEGSFGGGTRAAAMPKPPAGFVLDDQGRCIAAASKRIVTIIDDTNNRPLECIIRRVFRSTLDHDCMLLCPVDMPVQVLKSANFSGWIAVDDDQIKEIIPSVAYALARVHMHFVESGFCYTARGGFCFPEDAIQEFHDSGDGGDSVPFEGVEICCFNLDGAHYMIYTPVDPLLFVAVKDKDGVLRIAEDELMDDPAVVGAIDEETEFTALVEEEEALLESVLGER*