Gene Details:
- MSU gene ID: LOC_Os05g01450
- RAPdb gene ID: Os05g0104800
- Gene Symbol: OseIF3f
- Genome: MSU7 , IRGSP-1.0
- Species: Oryza sativa
Functional Descriptions:
- Subcellular localization analysis showed that OseIF3f was localized to the cytosol and the endoplasmic reticulum in rice root cells.
- The OseIF3f-RNAi lines grew normally at the vegetative stage but displayed a large reduction in seed production and pollen viability, which is associated with the down-regulation of OseIF3f.
Function-related keywords:
- root , pollen , seed , vegetative
Literature:
- The Rice Eukaryotic Translation Initiation Factor 3 Subunit f (OseIF3f) Is Involved in Microgametogenesis . DOI: 10.3389/fpls.2016.00532 ; PMID: 27200010
Related News:
Gene Resources:
Sequences:
cDNA Sequence
- >LOC_Os05g01450.2 cDNA AATCGGAAAGAGAAGCTTTGCTCGTCTCCTTCCTTCCGCCGCCGCCGAAGCAGAAGAGGAAGAAGAGAGAAGAAAGAAGCATTGGCGATGGCTGCGGCGGAGGGCCCCGTTCTCCTCTTCCCCTCTACCTCGTCGACGTCCGCCCGGGTGGAGGCGGTCGTCGTGTTCAACATCTGCGACAGCTACGTGCGCCGCCCCGACCAGGCGGAGCGCGTCATCGGCACCCTCCTCGGCTCCGTCCTCCCCGACGGCACCGTCCATGTCCGCAACTCCTACGTCGTCCCCCACAACGAGTCCCCCGACCAGGTTCTCGACTGGCTTCGGTGTTTCTGGGGGAAGTACGCTTATCCATGATTTTTACTCAAGAGAAGTACAGAGCCCCATTCATCTCACTGTTGACACTGGGTTCACAAGGGGCGATGCTTCAATCAAAGCCTATATCTCATCCAACCTGTCTCTTGGAGATAGGCACCTTGCTGCGCAGTTCCAAGAGATTCCCCTTGATCTGAGGATGCTTGAAGCAGGAAAAGTTGGATTTGACATCCTGAAATCTACAATTGTGGAGAAGCTCCCCAATGATCTGGAAGGAATGGAATCCTCCATGGAAAAGCTGTATGTCCTTATTGACGAGATCTACAAATATGTTGATGATGTCGTGGAGGGGCGTGTAGCACCGGACAATAAAATTGGGAGATTCATCTCTGATGCTGTTGCTTCAATGCCAAAATTGTCACCAGCTGCTTTTGACAAGCTTTTCAATGACAGGATTCAGGATAATCTTGCACTGGTGTACCTGTCAAGCATCACAAGGACACAGATTAGCATAGCCGAGAAGTTGAACACCGCCGCCCAAATCCTGTAATTTCCATGTAGTTGGAGCATCTGGGAGTCTGACTTAAAATGCTGTTTTGTTTGTTTTTCATTCGCACGACTGAAAAATTGGGATATGATGGCAGAGTATGCATTTTTGTACTTGTTATCTGAGGCCTAAAGAAAAGAAACCATCATGTTTCAGATGATAATGTTTGTGTTGGAGGTTGGGTGCACTCTTGGATTAGTATTTCGATGTAGTTTAAATATTTGTGTTAGCGCTCTTGCTTGATTTCCTCGAGGAGCACTTTTGGAAGGTGCGGTCAATTTTGTTGTGCCTTCATTTTGAGGCAGAGATAAACCACCCAGATCATCATTATATA
- >LOC_Os05g01450.1 cDNA AATCGGAAAGAGAAGCTTTGCTCGTCTCCTTCCTTCCGCCGCCGCCGAAGCAGAAGAGGAAGAAGAGAGAAGAAAGAAGCATTGGCGATGGCTGCGGCGGAGGGCCCCGTTCTCCTCTTCCCCTCTACCTCGTCGACGTCCGCCCGGGTGGAGGCGGTCGTCGTGTTCAACATCTGCGACAGCTACGTGCGCCGCCCCGACCAGGCGGAGCGCGTCATCGGCACCCTCCTCGGCTCCGTCCTCCCCGACGGCACCGTCCATGTCCGCAACTCCTACGTCGTCCCCCACAACGAGTCCCCCGACCAGGTTCTCGACTGGCTTCGGTGTTTCTGGGGGAAGTACGCTTATCCATGATTTTTACTCAAGAGAAGTACAGAGCCCCATTCATCTCACTGTTGACACTGGGTTCACAAGGGGCGATGCTTCAATCAAAGCCTATATCTCATCCAACCTGTCTCTTGGAGATAGGCACCTTGCTGCGCAGTTCCAAGAGATTCCCCTTGATCTGAGGATGCTTGAAGCAGGAAAAGTTGGATTTGACATCCTGAAATCTACAATTGTGGAGAAGCTCCCCAATGATCTGGAAGGAATGGAATCCTCCATGGAAAAGCTGTATGTCCTTATTGACGAGATCTACAAATATGTTGATGATGTCGTGGAGGGGCGTGTAGCACCGGACAATAAAATTGGGAGATTCATCTCTGATGCTGTTGCTTCAATGCCAAAATTGTCACCAGCTGCTTTTGACAAGCTTTTCAATGACAGGATTCAGGATAATCTTGCACTGGTGTACCTGTCAAGCATCACAAGGACACAGATTAGCATAGCCGAGAAGTTGAACACCGCCGCCCAAATCCTGTAATTTCCATGTAGTTGGAGCATCTGGGAGTCTGACTTAAAATGCTGTTTTGTTTGTTTTTCATTCGCACGACTGAAAAATTGGGATATGATGGCAGAGTATGCATTTTTGTACTTGTTATCTGAGGCCTAAAGAAAAGAAACCATCATGTTTCAGATGATAATGTTTGTGTTGGAGGTTGGGTGCACTCTTGGATTAGTATTTCGATGTAGTTTAAATATTTGTGTTAGCGCTCTTGCTTGATTTCCTCGAGGAGCACTTTTGGAAGGTGCGGTCAATTTTGTTGTGCCTTCATTTTGAGGCAGAGATAAACCACCCAGATCATCATTATATA
CDS Sequence
- >LOC_Os05g01450.2 CDS ATGTCCGCAACTCCTACGTCGTCCCCCACAACGAGTCCCCCGACCAGGTTCTCGACTGGCTTCGGTGTTTCTGGGGGAAGTACGCTTATCCATGATTTTTACTCAAGAGAAGTACAGAGCCCCATTCATCTCACTGTTGACACTGGGTTCACAAGGGGCGATGCTTCAATCAAAGCCTATATCTCATCCAACCTGTCTCTTGGAGATAGGCACCTTGCTGCGCAGTTCCAAGAGATTCCCCTTGATCTGAGGATGCTTGAAGCAGGAAAAGTTGGATTTGACATCCTGAAATCTACAATTGTGGAGAAGCTCCCCAATGATCTGGAAGGAATGGAATCCTCCATGGAAAAGCTGTATGTCCTTATTGACGAGATCTACAAATATGTTGATGATGTCGTGGAGGGGCGTGTAGCACCGGACAATAAAATTGGGAGATTCATCTCTGATGCTGTTGCTTCAATGCCAAAATTGTCACCAGCTGCTTTTGACAAGCTTTTCAATGACAGGATTCAGGATAATCTTGCACTGGTGTACCTGTCAAGCATCACAAGGACACAGATTAGCATAGCCGAGAAGTTGAACACCGCCGCCCAAATCCTGTAA
- >LOC_Os05g01450.1 CDS ATGTCCGCAACTCCTACGTCGTCCCCCACAACGAGTCCCCCGACCAGGTTCTCGACTGGCTTCGGTGTTTCTGGGGGAAGTACGCTTATCCATGATTTTTACTCAAGAGAAGTACAGAGCCCCATTCATCTCACTGTTGACACTGGGTTCACAAGGGGCGATGCTTCAATCAAAGCCTATATCTCATCCAACCTGTCTCTTGGAGATAGGCACCTTGCTGCGCAGTTCCAAGAGATTCCCCTTGATCTGAGGATGCTTGAAGCAGGAAAAGTTGGATTTGACATCCTGAAATCTACAATTGTGGAGAAGCTCCCCAATGATCTGGAAGGAATGGAATCCTCCATGGAAAAGCTGTATGTCCTTATTGACGAGATCTACAAATATGTTGATGATGTCGTGGAGGGGCGTGTAGCACCGGACAATAAAATTGGGAGATTCATCTCTGATGCTGTTGCTTCAATGCCAAAATTGTCACCAGCTGCTTTTGACAAGCTTTTCAATGACAGGATTCAGGATAATCTTGCACTGGTGTACCTGTCAAGCATCACAAGGACACAGATTAGCATAGCCGAGAAGTTGAACACCGCCGCCCAAATCCTGTAA
Protein Sequence
- >LOC_Os05g01450.2 protein MSATPTSSPTTSPPTRFSTGFGVSGGSTLIHDFYSREVQSPIHLTVDTGFTRGDASIKAYISSNLSLGDRHLAAQFQEIPLDLRMLEAGKVGFDILKSTIVEKLPNDLEGMESSMEKLYVLIDEIYKYVDDVVEGRVAPDNKIGRFISDAVASMPKLSPAAFDKLFNDRIQDNLALVYLSSITRTQISIAEKLNTAAQIL*
- >LOC_Os05g01450.1 protein MSATPTSSPTTSPPTRFSTGFGVSGGSTLIHDFYSREVQSPIHLTVDTGFTRGDASIKAYISSNLSLGDRHLAAQFQEIPLDLRMLEAGKVGFDILKSTIVEKLPNDLEGMESSMEKLYVLIDEIYKYVDDVVEGRVAPDNKIGRFISDAVASMPKLSPAAFDKLFNDRIQDNLALVYLSSITRTQISIAEKLNTAAQIL*