Gene Details:
- MSU gene ID: LOC_Os06g48065
- RAPdb gene ID: Os06g0695900
- Gene Symbol: RAE3
- Genome: MSU7 , IRGSP-1.0
- Species: Oryza sativa
Functional Descriptions:
- Identification of RAE3 sheds light on the molecular mechanism underlying awn development and provides an example of how selection on different genes can confer the same domestication phenotype in Asian and African rice.
- A 48-bp deletion may disrupt the substrate recognition domain in RAE3 and diminish awn elongation.
Function-related keywords:
Literature:
- Regulator of Awn Elongation 3, an E3 ubiquitin ligase, is responsible for loss of awns during African rice domestication . DOI: 10.1073/pnas.2207105120 ; PMID: 36649409
Related News:
Gene Resources:
Sequences:
cDNA Sequence
- >LOC_Os06g48065.1 cDNA GAGGTGGAGTACATCTAAAATCCCTCGTCTTGTCGCTGCTAAGCTTGCCGCCGATGGAGCCGTCGCGGCGGCTGCTGCTGTCCGACTACGACGGCGCGATCGTGTCGCCGCTGCCGTCGCCGCCGCCGTCGTCGGCCACGCCGTTCAGGCCGGGCGTCGCGGTGGTCGTGGGCATCCTGACGAGCGTGTTCTCCATCACGTTCCTGCTGCTGCTGTACGCGAAGCACTGCAAGCGGAACGCCGCGGAGTCGTCGGGCCCGTACGGGAGCGGCGGCGCGTTCGGGTCGTCCGGTGGGGGCGGGGCGGGCGAGCGGCGGAACTCCGGCGTCGACCGCGCCGTGGTGGAGTCGCTGCCGGTGTTCCGGTTCGGCGCGCTCCGTGGGCAGAAGGCTGGGCTCGAGTGCGCGGTGTGCCTCGGCCGGTTCGAGCCGACGGAGGCGCTCCGGCTGCTGCCGAAATGCCGCCATGGGTTCCACGTCGAGTGCGTGGATACGTGGCTGGACGCGCACTCGACGTGCCCGCTGTGCCGCTCCCGCGTCGACCCCGAGGACGTCCTGCTCCTCCCGGAGCCGCCAAAGCCGTCCACCACGGGGCCCCCTGATCCGCCGGAGACGAAGGTGGCGGCGGCGGCGGCGGCTGCTACGGCCAAGGACAAGGAGGCGAGCTTAGCTCCTGCTGCTCCTGCTCCGTCTCCAGCGTTTAGAGGCTTCTTCTCCGGCCGGCACTCGACGGGGTCGGTACGGGCGCCAGGGAGGGTTGGCCCTGCCTCACGCCGGTCGGCCGATCTCGTCGGAGGCGACGGCGGTGCGGTGGTGGGATGCTTCGAGGCCGCCAAGGTTCGCAAGGACAGGGTGCTGTTGATGGAGCCGGCGGCCGCGGTGGCGGAGCCTGACCCGGAAGCCTACGACCGGCGGTTCGGGCACCGCATCCTGGTGAGCACCGCCGGTGGCTGCGAGGACGAGACGGCACCGGCGGCGAAGCAGCGGTGGAGCGAGGTGCGACCATCCGATCTGATGTTCGTCCGGTCGGAGATGCTGGTGACGGAGGCCGGCCGGTACTCCTGCTCCGCCGCCGTCCACTCCGGCAACGGCAGGAGCGTAATCAGCGCGAGGAGCCTATCGGAGCTCGCCGGCGTGAGCCGGCTCCCTCCCATCCGCGCCAGCGGCGAGCCACGAGCCGGCGCGCGTCGGTGGCCGGGCTCGAGCTGGTGGGCCCGGGGCCCGCCCGCCCTTAACGGCCCTAGCACCTAGGCCGCTGTTCCGCGGGGCCCACTTCGCAGCCCGGAAAAAGGCTCCCAATTTTTTCTCTCCCCATACTGCCCCCGCCACTTCCACGTAAACCACGGCACCCTATGCCCGAACCCGTGGCTCACGTGATGGGCACCATGGTAATTACACGCAGCTGGGGCACAAGACTGCAAGATGAGTCCATGCCATGCCCGCCTCGGGAGCCGCGCCGCTAGAGAGAGATAAGATGGTGGTGGTGATGGTATGTTGCTTTCCGCGGGGATCTCGAGGCAAAGGTGCTGGTTTCTTCCTGAATTCGGGCGGCCTGGATCGATCGGCTACGGCCCGCATATGGCGCCGGCGAAGGCGTCGTAGCCCAATGCGCCGTGGATCTTCTGCGGCGCCGTGCGCTGACAAGGGCTTTTGGCGCGTCGCGTCGGCCGGGTCGGGGGACGAGGGAACCAGGCAACCAGCCCATGCTACACAAGAGAGAAAAAGAAAAAAAAAGCTGGTCGTATGCGTGTAAAATTCTTGTCTGTGTAAGAGGAAAAGCGCTGCAACTTTTTGGTGTAACCTGTTGCAAAGCATCTCCCGGGCAATGGCTCAGTTAGTAAAGCAGCTAAAGCCCATCTCGCATTTCTCATCTACTATCCTCTTGGTTTTTTTGTTGCGTCGTGTTGCTAGACTCGGTTCCGTTTTGCATTCTAGCGTAGTGGCAGTAGTACTATC
CDS Sequence
- >LOC_Os06g48065.1 CDS ATGGAGCCGTCGCGGCGGCTGCTGCTGTCCGACTACGACGGCGCGATCGTGTCGCCGCTGCCGTCGCCGCCGCCGTCGTCGGCCACGCCGTTCAGGCCGGGCGTCGCGGTGGTCGTGGGCATCCTGACGAGCGTGTTCTCCATCACGTTCCTGCTGCTGCTGTACGCGAAGCACTGCAAGCGGAACGCCGCGGAGTCGTCGGGCCCGTACGGGAGCGGCGGCGCGTTCGGGTCGTCCGGTGGGGGCGGGGCGGGCGAGCGGCGGAACTCCGGCGTCGACCGCGCCGTGGTGGAGTCGCTGCCGGTGTTCCGGTTCGGCGCGCTCCGTGGGCAGAAGGCTGGGCTCGAGTGCGCGGTGTGCCTCGGCCGGTTCGAGCCGACGGAGGCGCTCCGGCTGCTGCCGAAATGCCGCCATGGGTTCCACGTCGAGTGCGTGGATACGTGGCTGGACGCGCACTCGACGTGCCCGCTGTGCCGCTCCCGCGTCGACCCCGAGGACGTCCTGCTCCTCCCGGAGCCGCCAAAGCCGTCCACCACGGGGCCCCCTGATCCGCCGGAGACGAAGGTGGCGGCGGCGGCGGCGGCTGCTACGGCCAAGGACAAGGAGGCGAGCTTAGCTCCTGCTGCTCCTGCTCCGTCTCCAGCGTTTAGAGGCTTCTTCTCCGGCCGGCACTCGACGGGGTCGGTACGGGCGCCAGGGAGGGTTGGCCCTGCCTCACGCCGGTCGGCCGATCTCGTCGGAGGCGACGGCGGTGCGGTGGTGGGATGCTTCGAGGCCGCCAAGGTTCGCAAGGACAGGGTGCTGTTGATGGAGCCGGCGGCCGCGGTGGCGGAGCCTGACCCGGAAGCCTACGACCGGCGGTTCGGGCACCGCATCCTGGTGAGCACCGCCGGTGGCTGCGAGGACGAGACGGCACCGGCGGCGAAGCAGCGGTGGAGCGAGGTGCGACCATCCGATCTGATGTTCGTCCGGTCGGAGATGCTGGTGACGGAGGCCGGCCGGTACTCCTGCTCCGCCGCCGTCCACTCCGGCAACGGCAGGAGCGTAATCAGCGCGAGGAGCCTATCGGAGCTCGCCGGCGTGAGCCGGCTCCCTCCCATCCGCGCCAGCGGCGAGCCACGAGCCGGCGCGCGTCGGTGGCCGGGCTCGAGCTGGTGGGCCCGGGGCCCGCCCGCCCTTAACGGCCCTAGCACCTAG
Protein Sequence
- >LOC_Os06g48065.1 protein MEPSRRLLLSDYDGAIVSPLPSPPPSSATPFRPGVAVVVGILTSVFSITFLLLLYAKHCKRNAAESSGPYGSGGAFGSSGGGGAGERRNSGVDRAVVESLPVFRFGALRGQKAGLECAVCLGRFEPTEALRLLPKCRHGFHVECVDTWLDAHSTCPLCRSRVDPEDVLLLPEPPKPSTTGPPDPPETKVAAAAAAATAKDKEASLAPAAPAPSPAFRGFFSGRHSTGSVRAPGRVGPASRRSADLVGGDGGAVVGCFEAAKVRKDRVLLMEPAAAVAEPDPEAYDRRFGHRILVSTAGGCEDETAPAAKQRWSEVRPSDLMFVRSEMLVTEAGRYSCSAAVHSGNGRSVISARSLSELAGVSRLPPIRASGEPRAGARRWPGSSWWARGPPALNGPST*