Gene Details:
- MSU gene ID: LOC_Os06g51220
- RAPdb gene ID: Os06g0728000
- Gene Symbol: HMGB1 OsHMGB1
- Genome: MSU7 , IRGSP-1.0
- Species: Oryza sativa
Functional Descriptions:
Function-related keywords:
Literature:
- Rice HMGB1 protein recognizes DNA structures and bends DNA efficiently . DOI: 10.1016/s0003-9861(02)00721-x ; PMID: 12590928
- Cloning and characterization of rice HMGB1 gene . DOI: 10.1016/s0378-1119(03)00605-x ; PMID: 12909345
Related News:
Gene Resources:
- NCBI ID: AF541859
- UniProt accessions:
Sequences:
cDNA Sequence
- >LOC_Os06g51220.2 cDNA TTCTTATCCCTTGTCCTCGCAACCCCGCTTCCTTCTCTCCTCTCCTCTTCTCTTCTCTTCTCTGGTGGTGTGGGTGTGTCCCTGTCTCCCCTCTCCTTCCTCCTCTCCTTTCCCCTCCTCTCTTCCCCCCTCTCACAAGAGAGAGAGCGCCAGACTCTCCCCAGGTGAGGATTCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAAGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAAGGGGAAGGCCGGCAAGGACCCCAACAAGCCCAAGAGGGCTCCCTCCGCTTTCTTCGTTTTTATGGAGGAGTTCCGTAAGGAGTTCAAGGAGAAGAACCCCAAGAATAAATCTGTCGCTGCTGTAGGAAAAGCAGCCGGTGATAGGTGGAAATCCCTGACCGAAGCGGACAAGGCTCCCTATGTAGCCAAGGCCAACAAGCTCAAGGCCGAGTACAACAAGGCCATTGCTGCCTACAACAAGGGCGAGAGCACTGCCAAGAAGGCACCCGCCAAGGAGGAAGAGGAGGACGACGAGGAGGAATCTGACAAGTCCAAGTCCGAGGTCAATGATGAGGATGACGACGAGGGCAGCGAAGAGGATGAAGACGATGACGAGTGAGCCTTCCAGTGGACAAGATGGGAGCAGCAAGACGCTAAGGGCGGCGGGCGTCCTAAGGAGCCTATCCATCATCATCATCGTCTACTAGAATTATTCAGTTTCACTTCACATCGTGATGTTTTACTTTTTCTCTCGTCCTATAACGGATAGCGCTCCTTGTTGGCGCCACTGGTGGGTGTTGTGGTGCAGCCAATGTCTTGTCTCCACCGTCAATGATCCGCTTGTACCTAGATTACTCTTTCCATTGTCATCGGCTAACATTGTGATAATATCAGTTTGCGTATGTTAGATTAAATTGTTTCTAATTCCGTCGTTTTCTTCTTCCTTGCACTTAGCTTGTGATAAAATTGCTTTGCGGTAGGTAGGTACTCCGCTAGCTAATTGTGGTCGATCGATTGCTTGTTTGATTGCGGATCACACTAGCCAGTGTTGATTTTAAGATTTGTTTTTCTTGA
- >LOC_Os06g51220.3 cDNA TTCTTATCCCTTGTCCTCGCAACCCCGCTTCCTTCTCTCCTCTCCTCTTCTCTTCTCTTCTCTGGTGGTGTGGGTGTGTCCCTGTCTCCCCTCTCCTTCCTCCTCTCCTTTCCCCTCCTCTCTTCCCCCCTCTCACAAGAGAGAGAGCGCCAGACTCTCCCCAGGTGAGGATTCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAAGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAAGGGGAAGGCCGGCAAGGACCCCAACAAGCCCAAGAGGGCTCCCTCCGCTTTCTTCGTTTTTATGGAGGAGTTCCGTAAGGAGTTCAAGGAGAAGAACCCCAAGAATAAATCTGTCGCTGCTGTAGGAAAAGCAGCCGGTGATAGGTGGAAATCCCTGACCGAAGCGGACAAGGCTCCCTATGTAGCCAAGGCCAACAAGCTCAAGGCCGAGTACAACAAGGCCATTGCTGCCTACAACAAGGGCGAGAGCACTGCCAAGAAGGCACCCGCCAAGGAGGAAGAGGAGGACGACGAGGAGGAATCTGACAAGTCCAAGTCCGAGGTCAATGATGAGGATGACGACGAGGGCAGCGAAGAGGATGAAGACGATGACGAGTGAGCCTTCCAGTGGACAAGATGGGAGCAGCAAGACGCTAAGGGCGGCGGGCGTCCTAAGGAGCCTATCCATCATCATCATCGTCTACTAGAATTATTCAGTTTCACTTCACATCGTGATGTTTTACTTTTTCTCTCGTCCTATAACGGATAGCGCTCCTTGTTGGCGCCACTGGTGGGTGTTGTGGTGCAGCCAATGTCTTGTCTCCACCGTCAATGATCCGCTTGTACCTAGATTACTCTTTCCATTGTCATCGGCTAACATTGTGATAATATCAGTTTGCGTATGTTAGATTAAATTGTTTCTAATTCCGTCGTTTTCTTCTTCCTTGCACTTAGCTTGTGATAAAATTGCTTTGCGGTAGGTAGGTACTCCGCTAGCTAATTGTGGTCGATCGATTGCTTGTTTGATTGCGGATCACACTAGCCAGTGTTGATTTTAAGATTTGTTTTTCTTGA
- >LOC_Os06g51220.4 cDNA TTCTTATCCCTTGTCCTCGCAACCCCGCTTCCTTCTCTCCTCTCCTCTTCTCTTCTCTTCTCTGGTGGTGTGGGTGTGTCCCTGTCTCCCCTCTCCTTCCTCCTCTCCTTTCCCCTCCTCTCTTCCCCCCTCTCACAAGAGAGAGAGCGCCAGACTCTCCCCAGGTGAGGATTCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAAGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAAGGGGAAGGCCGGCAAGGACCCCAACAAGCCCAAGAGGGCTCCCTCCGCTTTCTTCGTTTTTATGGAGGAGTTCCGTAAGGAGTTCAAGGAGAAGAACCCCAAGAATAAATCTGTCGCTGCTGTAGGAAAAGCAGCCGGTGATAGGTGGAAATCCCTGACCGAAGCGGACAAGGCTCCCTATGTAGCCAAGGCCAACAAGCTCAAGGCCGAGTACAACAAGGCCATTGCTGCCTACAACAAGGGCGAGAGCACTGCCAAGAAGGCACCCGCCAAGGAGGAAGAGGAGGACGACGAGGAGGAATCTGACAAGTCCAAGTCCGAGGTCAATGATGAGGATGACGACGAGGGCAGCGAAGAGGATGAAGACGATGACGAGTGAGCCTTCCAGTGGACAAGATGGGAGCAGCAAGACGCTAAGGGCGGCGGGCGTCCTAAGGAGCCTATCCATCATCATCATCGTCTACTAGAATTATTCAGTTTCACTTCACATCGTGATGTTTTACTTTTTCTCTCGTCCTATAACGGATAGCGCTCCTTGTTGGCGCCACTGGTGGGTGTTGTGGTGCAGCCAATGTCTTGTCTCCACCGTCAATGATCCGCTTGTACCTAGATTACTCTTTCCATTGTCATCGGCTAACATTGTGATAATATCAGTTTGCGTATGTTAGATTAAATTGTTTCTAATTCCGTCGTTTTCTTCTTCCTTGCACTTAGCTTGTGATAAAATTGCTTTGCGGTAGGTAGGTACTCCGCTAGCTAATTGTGGTCGATCGATTGCTTGTTTGATTGCGGATCACACTAGCCAGTGTTGATTTTAAGATTTGTTTTTCTTGA
CDS Sequence
- >LOC_Os06g51220.2 CDS ATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAAGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAAGGGGAAGGCCGGCAAGGACCCCAACAAGCCCAAGAGGGCTCCCTCCGCTTTCTTCGTTTTTATGGAGGAGTTCCGTAAGGAGTTCAAGGAGAAGAACCCCAAGAATAAATCTGTCGCTGCTGTAGGAAAAGCAGCCGGTGATAGGTGGAAATCCCTGACCGAAGCGGACAAGGCTCCCTATGTAGCCAAGGCCAACAAGCTCAAGGCCGAGTACAACAAGGCCATTGCTGCCTACAACAAGGGCGAGAGCACTGCCAAGAAGGCACCCGCCAAGGAGGAAGAGGAGGACGACGAGGAGGAATCTGACAAGTCCAAGTCCGAGGTCAATGATGAGGATGACGACGAGGGCAGCGAAGAGGATGAAGACGATGACGAGTGA
- >LOC_Os06g51220.3 CDS ATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAAGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAAGGGGAAGGCCGGCAAGGACCCCAACAAGCCCAAGAGGGCTCCCTCCGCTTTCTTCGTTTTTATGGAGGAGTTCCGTAAGGAGTTCAAGGAGAAGAACCCCAAGAATAAATCTGTCGCTGCTGTAGGAAAAGCAGCCGGTGATAGGTGGAAATCCCTGACCGAAGCGGACAAGGCTCCCTATGTAGCCAAGGCCAACAAGCTCAAGGCCGAGTACAACAAGGCCATTGCTGCCTACAACAAGGGCGAGAGCACTGCCAAGAAGGCACCCGCCAAGGAGGAAGAGGAGGACGACGAGGAGGAATCTGACAAGTCCAAGTCCGAGGTCAATGATGAGGATGACGACGAGGGCAGCGAAGAGGATGAAGACGATGACGAGTGA
- >LOC_Os06g51220.4 CDS ATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAAGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAAGGGGAAGGCCGGCAAGGACCCCAACAAGCCCAAGAGGGCTCCCTCCGCTTTCTTCGTTTTTATGGAGGAGTTCCGTAAGGAGTTCAAGGAGAAGAACCCCAAGAATAAATCTGTCGCTGCTGTAGGAAAAGCAGCCGGTGATAGGTGGAAATCCCTGACCGAAGCGGACAAGGCTCCCTATGTAGCCAAGGCCAACAAGCTCAAGGCCGAGTACAACAAGGCCATTGCTGCCTACAACAAGGGCGAGAGCACTGCCAAGAAGGCACCCGCCAAGGAGGAAGAGGAGGACGACGAGGAGGAATCTGACAAGTCCAAGTCCGAGGTCAATGATGAGGATGACGACGAGGGCAGCGAAGAGGATGAAGACGATGACGAGTGA
Protein Sequence
- >LOC_Os06g51220.2 protein MKGAKSKGAAKPDAKLAVKSKGAEKPAAKGRKGKAGKDPNKPKRAPSAFFVFMEEFRKEFKEKNPKNKSVAAVGKAAGDRWKSLTEADKAPYVAKANKLKAEYNKAIAAYNKGESTAKKAPAKEEEEDDEEESDKSKSEVNDEDDDEGSEEDEDDDE*
- >LOC_Os06g51220.3 protein MKGAKSKGAAKPDAKLAVKSKGAEKPAAKGRKGKAGKDPNKPKRAPSAFFVFMEEFRKEFKEKNPKNKSVAAVGKAAGDRWKSLTEADKAPYVAKANKLKAEYNKAIAAYNKGESTAKKAPAKEEEEDDEEESDKSKSEVNDEDDDEGSEEDEDDDE*
- >LOC_Os06g51220.4 protein MKGAKSKGAAKPDAKLAVKSKGAEKPAAKGRKGKAGKDPNKPKRAPSAFFVFMEEFRKEFKEKNPKNKSVAAVGKAAGDRWKSLTEADKAPYVAKANKLKAEYNKAIAAYNKGESTAKKAPAKEEEEDDEEESDKSKSEVNDEDDDEGSEEDEDDDE*