Gene Details:
- MSU gene ID: LOC_Os07g26940
- RAPdb gene ID: Os07g0452500
- Gene Symbol: ORMDL
- Genome: MSU7 , IRGSP-1.0
- Species: Oryza sativa
Functional Descriptions:
- Rice ORMDL controls sphingolipid homeostasis affecting fertility resulting from abnormal pollen development.
- We found that the RNAi transgenic plants with low expression of either LOC_Os07g26940 alone or all three ORMDL genes were sterile, having abnormal pollen morphology and staining.
- Our results indicated that plant ORMDL proteins influence sphingolipid homeostasis, and deletion of this gene affected fertility resulting from abnormal pollen development.
Function-related keywords:
Literature:
- Rice ORMDL controls sphingolipid homeostasis affecting fertility resulting from abnormal pollen development . DOI: 10.1371/journal.pone.0106386 ; PMID: 25192280
Related News:
Gene Resources:
Sequences:
cDNA Sequence
- >LOC_Os07g26940.1 cDNA ACCCACCCCGTACACAATAGGGTATCATCATCACACCATCACGAGCACCACCACCACTCACCACGCGCCACCCACCCCCGCACCGCACGCCAAGATCCGACCGCCGCCGCCGCCGCCGCCGGAGTAGGGAGAGGGAGAGGAGATGGGGCGGAGGGCGGGGTCCTACCCCTACTACGTGGAGGCGGCGCCGCCGGTGGACGTGAACAAGAACACGGAGTGGTTCATGTACCCCGGGGTGTGGACCACCTACATCCTCCTCCTCTTCTTCGCCTGGCTGCTCGTCCTCTCCGTCTCCGCCTGCTCCCCCGGGATCGCGTGGACCGTCGTCAACCTCGCCCACTTCGCCATCACTTATCACTTCTTCCATTGGAAGAAGGGAACTCCATTTGCTGCTGATGACCAAGGCATCTACAACAGACTAACTTGGTGGGAACAAATTGATAACGGGCAGCAACTTACTCGTAATAGGAAGTTCTTGACTGTGGTACCTGTGGTGCTGTACCTGATCGCGTCACACTTGACCGACTACAAACAGCCAATGCTTTTCCTCAACACCATTGCAGTTCTGGTACTAGTGGTAGCAAAGCTGCCAAACATGCACAAGGTCCGTATATTTGGAATCAATGCAGATATCTGAGGACCATATGAAGAACATCAGGGCACAAGCTTCTGTGTGTTTGCAACGAGGGACAAGCGAACTTTGTGCAAACACGGTATCTAAAGTAGTGAAAAAACTAAACTTTTTCACCACTGCAATCTGTAGTATGTGCATAGGTGTAGGAAGAACCTGTAAATGTTACTGTAGCTTATAATTTGCCTACAGGTTGGAGGCTGCTGCATGTTTGCTCATGCCACTTCCTTTAAGAACTCTAGTGGAGAGTGTAGACTGTAACTTAAATAAACATGTAATCTTGTGGATATGGAAAGTTTGGTGGTTGTTAAAATGGTGAACCGGAGTTCAGTTCCTGCAAAAA
- >LOC_Os07g26940.3 cDNA ACCCACCCCGTACACAATAGGGTATCATCATCACACCATCACGAGCACCACCACCACTCACCACGCGCCACCCACCCCCGCACCGCACGCCAAGATCCGACCGCCGCCGCCGCCGCCGCCGGAGTAGGGAGAGGGAGAGGAGATGGGGCGGAGGGCGGGGTCCTACCCCTACTACGTGGAGGCGGCGCCGCCGGTGGACGTGAACAAGAACACGGAGTGGTTCATGTACCCCGGGGTGTGGACCACCTACATCCTCCTCCTCTTCTTCGCCTGGCTGCTCGTCCTCTCCGTCTCCGCCTGCTCCCCCGGGATCGCGTGGACCGTCGTCAACCTCGCCCACTTCGCCATCACTTATCACTTCTTCCATTGGAAGAAGGGAACTCCATTTGCTGCTGATGACCAAGGCATCTACAACAGACTAACTTGGTGGGAACAAATTGATAACGGGCAGCAACTTACTCGTAATAGGAAGTTCTTGACTGTGGTACCTGTGGTGCTGTACCTGATCGCGTCACACTTGACCGACTACAAACAGCCAATGCTTTTCCTCAACACCATTGCAGTTCTGGTACTAGTGGTAGCAAAGCTGCCAAACATGCACAAGGTCCGTATATTTGGAATCAATGCAGATATCTGAGGACCATATGAAGAACATCAGGGCACAAGCTTCTGTGTGTTTGCAACGAGGGACAAGCGAACTTTGTGCAAACACGGTATCTAAAGTAGTGAAAAAACTAAACTTTTTCACCACTGCAATCTGTAGTATGTGCATAGGTGTAGGAAGAACCTGTAAATGTTACTGTAGCTTATAATTTGCCTACAGGTTGGAGGCTGCTGCATGTTTGCTCATGCCACTTCCTTTAAGAACTCTAGTGGAGAGTGTAGACTGTAACTTAAATAAACATGTAATCTTGTGGATATGGAAAGTTTGGTGGTTGTTAAAATGGTGAACCGGAGTTCAGTTCCTGCAAAAA
- >LOC_Os07g26940.2 cDNA ACCCACCCCGTACACAATAGGGTATCATCATCACACCATCACGAGCACCACCACCACTCACCACGCGCCACCCACCCCCGCACCGCACGCCAAGATCCGACCGCCGCCGCCGCCGCCGCCGGAGTAGGGAGAGGGAGAGGAGATGGGGCGGAGGGCGGGGTCCTACCCCTACTACGTGGAGGCGGCGCCGCCGGTGGACGTGAACAAGAACACGGAGTGGTTCATGTACCCCGGGGTGTGGACCACCTACATCCTCCTCCTCTTCTTCGCCTGGCTGCTCGTCCTCTCCGTCTCCGCCTGCTCCCCCGGGATCGCGTGGACCGTCGTCAACCTCGCCCACTTCGCCATCACTTATCACTTCTTCCATTGGAAGAAGGGAACTCCATTTGCTGCTGATGACCAAGGCATCTACAACAGACTAACTTGGTGGGAACAAATTGATAACGGGCAGCAACTTACTCGTAATAGGAAGTTCTTGACTGTGGTACCTGTGGTGCTGTACCTGATCGCGTCACACTTGACCGACTACAAACAGCCAATGCTTTTCCTCAACACCATTGCAGTTCTGGTACTAGTGGTAGCAAAGCTGCCAAACATGCACAAGGTCCGTATATTTGGAATCAATGCAGATATCTGAGGACCATATGAAGAACATCAGGGCACAAGCTTCTGTGTGTTTGCAACGAGGGACAAGCGAACTTTGTGCAAACACGGTATCTAAAGTAGTGAAAAAACTAAACTTTTTCACCACTGCAATCTGTAGTATGTGCATAGGTGTAGGAAGAACCTGTAAATGTTACTGTAGCTTATAATTTGCCTACAGGTTGGAGGCTGCTGCATGTTTGCTCATGCCACTTCCTTTAAGAACTCTAGTGGAGAGTGTAGACTGTAACTTAAATAAACATGTAATCTTGTGGATATGGAAAGTTTGGTGGTTGTTAAAATGGTGAACCGGAGTTCAGTTCCTGCAAAAA
CDS Sequence
- >LOC_Os07g26940.1 CDS ATGGGGCGGAGGGCGGGGTCCTACCCCTACTACGTGGAGGCGGCGCCGCCGGTGGACGTGAACAAGAACACGGAGTGGTTCATGTACCCCGGGGTGTGGACCACCTACATCCTCCTCCTCTTCTTCGCCTGGCTGCTCGTCCTCTCCGTCTCCGCCTGCTCCCCCGGGATCGCGTGGACCGTCGTCAACCTCGCCCACTTCGCCATCACTTATCACTTCTTCCATTGGAAGAAGGGAACTCCATTTGCTGCTGATGACCAAGGCATCTACAACAGACTAACTTGGTGGGAACAAATTGATAACGGGCAGCAACTTACTCGTAATAGGAAGTTCTTGACTGTGGTACCTGTGGTGCTGTACCTGATCGCGTCACACTTGACCGACTACAAACAGCCAATGCTTTTCCTCAACACCATTGCAGTTCTGGTACTAGTGGTAGCAAAGCTGCCAAACATGCACAAGGTCCGTATATTTGGAATCAATGCAGATATCTGA
- >LOC_Os07g26940.3 CDS ATGGGGCGGAGGGCGGGGTCCTACCCCTACTACGTGGAGGCGGCGCCGCCGGTGGACGTGAACAAGAACACGGAGTGGTTCATGTACCCCGGGGTGTGGACCACCTACATCCTCCTCCTCTTCTTCGCCTGGCTGCTCGTCCTCTCCGTCTCCGCCTGCTCCCCCGGGATCGCGTGGACCGTCGTCAACCTCGCCCACTTCGCCATCACTTATCACTTCTTCCATTGGAAGAAGGGAACTCCATTTGCTGCTGATGACCAAGGCATCTACAACAGACTAACTTGGTGGGAACAAATTGATAACGGGCAGCAACTTACTCGTAATAGGAAGTTCTTGACTGTGGTACCTGTGGTGCTGTACCTGATCGCGTCACACTTGACCGACTACAAACAGCCAATGCTTTTCCTCAACACCATTGCAGTTCTGGTACTAGTGGTAGCAAAGCTGCCAAACATGCACAAGGTCCGTATATTTGGAATCAATGCAGATATCTGA
- >LOC_Os07g26940.2 CDS ATGGGGCGGAGGGCGGGGTCCTACCCCTACTACGTGGAGGCGGCGCCGCCGGTGGACGTGAACAAGAACACGGAGTGGTTCATGTACCCCGGGGTGTGGACCACCTACATCCTCCTCCTCTTCTTCGCCTGGCTGCTCGTCCTCTCCGTCTCCGCCTGCTCCCCCGGGATCGCGTGGACCGTCGTCAACCTCGCCCACTTCGCCATCACTTATCACTTCTTCCATTGGAAGAAGGGAACTCCATTTGCTGCTGATGACCAAGGCATCTACAACAGACTAACTTGGTGGGAACAAATTGATAACGGGCAGCAACTTACTCGTAATAGGAAGTTCTTGACTGTGGTACCTGTGGTGCTGTACCTGATCGCGTCACACTTGACCGACTACAAACAGCCAATGCTTTTCCTCAACACCATTGCAGTTCTGGTACTAGTGGTAGCAAAGCTGCCAAACATGCACAAGGTCCGTATATTTGGAATCAATGCAGATATCTGA
Protein Sequence
- >LOC_Os07g26940.1 protein MGRRAGSYPYYVEAAPPVDVNKNTEWFMYPGVWTTYILLLFFAWLLVLSVSACSPGIAWTVVNLAHFAITYHFFHWKKGTPFAADDQGIYNRLTWWEQIDNGQQLTRNRKFLTVVPVVLYLIASHLTDYKQPMLFLNTIAVLVLVVAKLPNMHKVRIFGINADI*
- >LOC_Os07g26940.3 protein MGRRAGSYPYYVEAAPPVDVNKNTEWFMYPGVWTTYILLLFFAWLLVLSVSACSPGIAWTVVNLAHFAITYHFFHWKKGTPFAADDQGIYNRLTWWEQIDNGQQLTRNRKFLTVVPVVLYLIASHLTDYKQPMLFLNTIAVLVLVVAKLPNMHKVRIFGINADI*
- >LOC_Os07g26940.2 protein MGRRAGSYPYYVEAAPPVDVNKNTEWFMYPGVWTTYILLLFFAWLLVLSVSACSPGIAWTVVNLAHFAITYHFFHWKKGTPFAADDQGIYNRLTWWEQIDNGQQLTRNRKFLTVVPVVLYLIASHLTDYKQPMLFLNTIAVLVLVVAKLPNMHKVRIFGINADI*