Gene Details:
- MSU gene ID: LOC_Os08g38810
- RAPdb gene ID: Os08g0496800
- Gene Symbol: RAFTIN1
- Genome: MSU7 , IRGSP-1.0
- Species: Oryza sativa
Functional Descriptions:
Function-related keywords:
Literature:
- Genome-wide identification of BURP domain-containing genes in rice reveals a gene family with diverse structures and responses to abiotic stresses . DOI: 10.1007/s00425-009-0929-z ; PMID: 19363683
- Tapetum degeneration retardation is critical for aliphatic metabolism and gene regulation during rice pollen development . DOI: 10.1093/mp/ssn028 ; PMID: 19825565
- The classical Ubisch bodies carry a sporophytically produced structural protein (RAFTIN) that is essential for pollen development . DOI: 10.1073/pnas.2231254100 ; PMID: 14612572
Related News:
Gene Resources:
Sequences:
cDNA Sequence
- >LOC_Os08g38810.2 cDNA GTCGATCGATCCGTCGCAGTCGTCTCCGGCGAGAAATCGGCTGCGCCCCGTCTCTCTCTCTCTCGAACGCTTCCATGGCGCGCTTCCTCCTCCTCCTCGTCGCCGTCGCCGCTGCCGCCGCCGTGCTTTCGCTGGGCGACGCGGCGCCGTCGACGGCCGAGGTGTTCTGGCGCGCCGTGCTGCCGGAATCCCCGTTGCCGGACGCCTTCCTCCGCCTCCTCCGCCCTGACACCAGCTTCGTCGTCGGCAAAGCGGAGGCGGCCGGTGGCGCGGCGCGGACCGGATTCCCCTTCGATTACACTGACTACAGGGGATCTGATTCTCCGACGACGGCGAGTGGTTTGGACCTCGCCGGTGACTTCGGCGAGCCGGCGCCTTTCGGCTACGACTACAGTGCACAGGGCGAAGGCGGCGGCGGCGGCGCCGCCGCCGCCGCGGGAGAGCAGGTTCTTGCCGTCGACGCGGGCTTCAACTACGACAAATACGTCGGCGCGAGGAAGCTCCGCGGCGGCAGCAGCACCGCCGGCGGAGAGAATGATGACGAGCCTTTCGGGTACGACTACAAGGCGCCGAGCAGCGGCAGCGGCACCGCGGCGTCGACGACGGCGCGAGGCGTCGGCACGGGCGCCACGACGACGGTGTTCTTCCACGAGGAGGCGGTGCGCGTCGGCGAGAGGCTCCCGTTCTACTTCCCGGCGGCGACGACGTCGGCGCTGGGCTTCCTGCCGCGCCGCGTCGCGGACTCCATCCCGTTCACGGCGGCCGCGCTGCCGGCCGTCCTCGCGCTGTTCGGCGTCGCGCCGGACACCGCCGAGGCGGCCGGCATGAGGGAGACGCTGCGCACGTGCGAGTGGCCGACCCTCGCCGGCGAGTCCAAGTTCTGCGCCACGTCGCTGGAGGCCCTGGTGGAGGGCGCCATGGCGGCGCTCGGGACACGCGACATCGCCGCGCTGGCGTCGACGCTGCCCCGCGGCGGCGCGCCGCTGCAGGCGTACGCCGTCCGCGCCGTGCTCCCCGTCGAGGGCGCCGGCTTCGTGGCGTGCCACGACCAGGCGTACCCGTACACCGTGTACCGCTGCCACACCACCGGCCCGGCCAGAGCTTACATGGTGGAGATGGAAGGCGACGGCGGCGGCGATGGCGGCGAGGCGGTGACCGTGGCCACCGTGTGCCACACCAACACGTCGCGGTGGAACCCGGAGCACGTCTCGTTCAAGCTCCTCGGCACCAAGCCCGGCGGCTCGCCGGTGTGCCACCTCATGCCGTACGGGCACATCGTCTGGGCCAAGAACGTGAAGAGCTCGACGGCGTAGGGCTCCAACTCCGGCGACGGCATTGTGAGCTATGCACGATGCATTATGCATCTTTTTATGTATGTTATTCGTGTCAGCTGCTGTAATGTCCACATCTAGAGGGATTATACTACCTGTAATAAATAACAGTTTGTGCCGCTGTGCTTATATTATCACATGAACAAAACTAGCTAGGTGGCCCACCCAATTGCGCGGCTAGCACCTATAC
- >LOC_Os08g38810.1 cDNA GTCGATCGATCCGTCGCAGTCGTCTCCGGCGAGAAATCGGCTGCGCCCCGTCTCTCTCTCTCTCGAACGCTTCCATGGCGCGCTTCCTCCTCCTCCTCGTCGCCGTCGCCGCTGCCGCCGCCGTGCTTTCGCTGGGCGACGCGGCGCCGTCGACGGCCGAGGTGTTCTGGCGCGCCGTGCTGCCGGAATCCCCGTTGCCGGACGCCTTCCTCCGCCTCCTCCGCCCTGACACCAGCTTCGTCGTCGGCAAAGCGGAGGCGGCCGGTGGCGCGGCGCGGACCGGATTCCCCTTCGATTACACTGACTACAGGGGATCTGATTCTCCGACGACGGCGAGTGGTTTGGACCTCGCCGGTGACTTCGGCGAGCCGGCGCCTTTCGGCTACGACTACAGTGCACAGGGCGAAGGCGGCGGCGGCGGCGCCGCCGCCGCCGCGGGAGAGCAGGTTCTTGCCGTCGACGCGGGCTTCAACTACGACAAATACGTCGGCGCGAGGAAGCTCCGCGGCGGCAGCAGCACCGCCGGCGGAGAGAATGATGACGAGCCTTTCGGGTACGACTACAAGGCGCCGAGCAGCGGCAGCGGCACCGCGGCGTCGACGACGGCGCGAGGCGTCGGCACGGGCGCCACGACGACGGTGTTCTTCCACGAGGAGGCGGTGCGCGTCGGCGAGAGGCTCCCGTTCTACTTCCCGGCGGCGACGACGTCGGCGCTGGGCTTCCTGCCGCGCCGCGTCGCGGACTCCATCCCGTTCACGGCGGCCGCGCTGCCGGCCGTCCTCGCGCTGTTCGGCGTCGCGCCGGACACCGCCGAGGCGGCCGGCATGAGGGAGACGCTGCGCACGTGCGAGTGGCCGACCCTCGCCGGCGAGTCCAAGTTCTGCGCCACGTCGCTGGAGGCCCTGGTGGAGGGCGCCATGGCGGCGCTCGGGACACGCGACATCGCCGCGCTGGCGTCGACGCTGCCCCGCGGCGGCGCGCCGCTGCAGGCGTACGCCGTCCGCGCCGTGCTCCCCGTCGAGGGCGCCGGCTTCGTGGCGTGCCACGACCAGGCGTACCCGTACACCGTGTACCGCTGCCACACCACCGGCCCGGCCAGAGCTTACATGGTGGAGATGGAAGGCGACGGCGGCGGCGATGGCGGCGAGGCGGTGACCGTGGCCACCGTGTGCCACACCAACACGTCGCGGTGGAACCCGGAGCACGTCTCGTTCAAGCTCCTCGGCACCAAGCCCGGCGGCTCGCCGGTGTGCCACCTCATGCCGTACGGGCACATCGTCTGGGCCAAGAACGTGAAGAGCTCGACGGCGTAGGGCTCCAACTCCGGCGACGGCATTGTGAGCTATGCACGATGCATTATGCATCTTTTTATGTATGTTATTCGTGTCAGCTGCTGTAATGTCCACATCTAGAGGGATTATACTACCTGTAATAAATAACAGTTTGTGCCGCTGTGCTTATATTATCACATGAACAAAACTAGCTAGGTGGCCCACCCAATTGCGCGGCTAGCACCTATAC
CDS Sequence
- >LOC_Os08g38810.2 CDS ATGGCGCGCTTCCTCCTCCTCCTCGTCGCCGTCGCCGCTGCCGCCGCCGTGCTTTCGCTGGGCGACGCGGCGCCGTCGACGGCCGAGGTGTTCTGGCGCGCCGTGCTGCCGGAATCCCCGTTGCCGGACGCCTTCCTCCGCCTCCTCCGCCCTGACACCAGCTTCGTCGTCGGCAAAGCGGAGGCGGCCGGTGGCGCGGCGCGGACCGGATTCCCCTTCGATTACACTGACTACAGGGGATCTGATTCTCCGACGACGGCGAGTGGTTTGGACCTCGCCGGTGACTTCGGCGAGCCGGCGCCTTTCGGCTACGACTACAGTGCACAGGGCGAAGGCGGCGGCGGCGGCGCCGCCGCCGCCGCGGGAGAGCAGGTTCTTGCCGTCGACGCGGGCTTCAACTACGACAAATACGTCGGCGCGAGGAAGCTCCGCGGCGGCAGCAGCACCGCCGGCGGAGAGAATGATGACGAGCCTTTCGGGTACGACTACAAGGCGCCGAGCAGCGGCAGCGGCACCGCGGCGTCGACGACGGCGCGAGGCGTCGGCACGGGCGCCACGACGACGGTGTTCTTCCACGAGGAGGCGGTGCGCGTCGGCGAGAGGCTCCCGTTCTACTTCCCGGCGGCGACGACGTCGGCGCTGGGCTTCCTGCCGCGCCGCGTCGCGGACTCCATCCCGTTCACGGCGGCCGCGCTGCCGGCCGTCCTCGCGCTGTTCGGCGTCGCGCCGGACACCGCCGAGGCGGCCGGCATGAGGGAGACGCTGCGCACGTGCGAGTGGCCGACCCTCGCCGGCGAGTCCAAGTTCTGCGCCACGTCGCTGGAGGCCCTGGTGGAGGGCGCCATGGCGGCGCTCGGGACACGCGACATCGCCGCGCTGGCGTCGACGCTGCCCCGCGGCGGCGCGCCGCTGCAGGCGTACGCCGTCCGCGCCGTGCTCCCCGTCGAGGGCGCCGGCTTCGTGGCGTGCCACGACCAGGCGTACCCGTACACCGTGTACCGCTGCCACACCACCGGCCCGGCCAGAGCTTACATGGTGGAGATGGAAGGCGACGGCGGCGGCGATGGCGGCGAGGCGGTGACCGTGGCCACCGTGTGCCACACCAACACGTCGCGGTGGAACCCGGAGCACGTCTCGTTCAAGCTCCTCGGCACCAAGCCCGGCGGCTCGCCGGTGTGCCACCTCATGCCGTACGGGCACATCGTCTGGGCCAAGAACGTGAAGAGCTCGACGGCGTAG
- >LOC_Os08g38810.1 CDS ATGGCGCGCTTCCTCCTCCTCCTCGTCGCCGTCGCCGCTGCCGCCGCCGTGCTTTCGCTGGGCGACGCGGCGCCGTCGACGGCCGAGGTGTTCTGGCGCGCCGTGCTGCCGGAATCCCCGTTGCCGGACGCCTTCCTCCGCCTCCTCCGCCCTGACACCAGCTTCGTCGTCGGCAAAGCGGAGGCGGCCGGTGGCGCGGCGCGGACCGGATTCCCCTTCGATTACACTGACTACAGGGGATCTGATTCTCCGACGACGGCGAGTGGTTTGGACCTCGCCGGTGACTTCGGCGAGCCGGCGCCTTTCGGCTACGACTACAGTGCACAGGGCGAAGGCGGCGGCGGCGGCGCCGCCGCCGCCGCGGGAGAGCAGGTTCTTGCCGTCGACGCGGGCTTCAACTACGACAAATACGTCGGCGCGAGGAAGCTCCGCGGCGGCAGCAGCACCGCCGGCGGAGAGAATGATGACGAGCCTTTCGGGTACGACTACAAGGCGCCGAGCAGCGGCAGCGGCACCGCGGCGTCGACGACGGCGCGAGGCGTCGGCACGGGCGCCACGACGACGGTGTTCTTCCACGAGGAGGCGGTGCGCGTCGGCGAGAGGCTCCCGTTCTACTTCCCGGCGGCGACGACGTCGGCGCTGGGCTTCCTGCCGCGCCGCGTCGCGGACTCCATCCCGTTCACGGCGGCCGCGCTGCCGGCCGTCCTCGCGCTGTTCGGCGTCGCGCCGGACACCGCCGAGGCGGCCGGCATGAGGGAGACGCTGCGCACGTGCGAGTGGCCGACCCTCGCCGGCGAGTCCAAGTTCTGCGCCACGTCGCTGGAGGCCCTGGTGGAGGGCGCCATGGCGGCGCTCGGGACACGCGACATCGCCGCGCTGGCGTCGACGCTGCCCCGCGGCGGCGCGCCGCTGCAGGCGTACGCCGTCCGCGCCGTGCTCCCCGTCGAGGGCGCCGGCTTCGTGGCGTGCCACGACCAGGCGTACCCGTACACCGTGTACCGCTGCCACACCACCGGCCCGGCCAGAGCTTACATGGTGGAGATGGAAGGCGACGGCGGCGGCGATGGCGGCGAGGCGGTGACCGTGGCCACCGTGTGCCACACCAACACGTCGCGGTGGAACCCGGAGCACGTCTCGTTCAAGCTCCTCGGCACCAAGCCCGGCGGCTCGCCGGTGTGCCACCTCATGCCGTACGGGCACATCGTCTGGGCCAAGAACGTGAAGAGCTCGACGGCGTAG
Protein Sequence
- >LOC_Os08g38810.2 protein MARFLLLLVAVAAAAAVLSLGDAAPSTAEVFWRAVLPESPLPDAFLRLLRPDTSFVVGKAEAAGGAARTGFPFDYTDYRGSDSPTTASGLDLAGDFGEPAPFGYDYSAQGEGGGGGAAAAAGEQVLAVDAGFNYDKYVGARKLRGGSSTAGGENDDEPFGYDYKAPSSGSGTAASTTARGVGTGATTTVFFHEEAVRVGERLPFYFPAATTSALGFLPRRVADSIPFTAAALPAVLALFGVAPDTAEAAGMRETLRTCEWPTLAGESKFCATSLEALVEGAMAALGTRDIAALASTLPRGGAPLQAYAVRAVLPVEGAGFVACHDQAYPYTVYRCHTTGPARAYMVEMEGDGGGDGGEAVTVATVCHTNTSRWNPEHVSFKLLGTKPGGSPVCHLMPYGHIVWAKNVKSSTA*
- >LOC_Os08g38810.1 protein MARFLLLLVAVAAAAAVLSLGDAAPSTAEVFWRAVLPESPLPDAFLRLLRPDTSFVVGKAEAAGGAARTGFPFDYTDYRGSDSPTTASGLDLAGDFGEPAPFGYDYSAQGEGGGGGAAAAAGEQVLAVDAGFNYDKYVGARKLRGGSSTAGGENDDEPFGYDYKAPSSGSGTAASTTARGVGTGATTTVFFHEEAVRVGERLPFYFPAATTSALGFLPRRVADSIPFTAAALPAVLALFGVAPDTAEAAGMRETLRTCEWPTLAGESKFCATSLEALVEGAMAALGTRDIAALASTLPRGGAPLQAYAVRAVLPVEGAGFVACHDQAYPYTVYRCHTTGPARAYMVEMEGDGGGDGGEAVTVATVCHTNTSRWNPEHVSFKLLGTKPGGSPVCHLMPYGHIVWAKNVKSSTA*