Gene Details:
- MSU gene ID: LOC_Os08g40560
- RAPdb gene ID: Os08g0517300
- Gene Symbol: ZOS8-11
- Genome: MSU7 , IRGSP-1.0
- Species: Oryza sativa
Functional Descriptions:
Function-related keywords:
Literature:
- Transcript profiling of crown rootless1 mutant stem base reveals new elements associated with crown root development in rice . DOI: 10.1186/1471-2164-12-387 ; PMID: 21806801
Related News:
Gene Resources:
Sequences:
cDNA Sequence
- >LOC_Os08g40560.1 cDNA GACCAGCCTCCGAGGAGCCACACGACGAGTCAAAAACACAGGGCCCTTCCCCTTCTCGCCGTCTCTCCTCTTCGCATCGTCTTCCTCCGCCTTCCCCGAATCCCCCGCTCCCCGACACCACACCGCGAGATCCTCCTCTTCCAGATCAAGCACCCACCCTACCTAGGGTTTCCACCCCGCCATGGCCGAGGTCGCCCGCGCCTCGGCTTCCCCACCTCCCGCCTCCGCCTCCACCGGCGGCGACCGCAAGCGTGGCCGCTCCTCCCCGTCGCTCCCGCCGCCGCCGCCCGGGCCCCCTCCGCAGGTCCCGCATGGGAGCAAGAGGCACCGCAGGGACGAGGGGGGCGGGGGCGGGTTCGATCGGCGCCGCCTCGGGCCGGGAGTAGGGTACGACAACCCGGACGATAGGAGGTATGGAAATGATCATGGTGGTGCAGGAGGAAGAGGTGGATATGGGGATGAGAGAGGTCAGGGTAGAAACTTCAATCGTGCACCAGATTGGACTGATTCTGGACGTGGTGGATGGAATGATGGCCCGGCTAACTCTCGTAGGGAAGGCCTCATGTCTTACAAGCAGTTCATGCAGGAGCTTGAAGATGATGTTTCGCCTGATGAAGCTCAACACAGATATGAGGAGTACAAGTCAGAGTACATAACAACTCAGAAGAAAGCGTACTTTGACCTTCATAAGAACGACGACTGGCTGAAAAACAAGTACCATCCGACTAACCTTGAAATTGTCATGGAAAGAAGGAATGAACTTGCACGAACTGCTGCAAATCAATTCCTCCAAGATTTGCAGAATGGGAGTTTAGACATTGGTCCAGGATTAACAAGTTCTGCAACAAACAAATCTGGGAATAGCGTAGATGATACGGATGCTAATGGAAAAAAGGGGAAACTTGGAAAGAGCCAAGATGATTTATATTATGCTGCTCCTAAGGCTCATCCAGTTAGCTCTGAGCCCCGTCGAATTAGAATTGACGTTGAGCTAGCTCAAGCTCTCATTTGTAAACTTGATTCAGAGAAGGGTATTGAGAATAATGTTCTGTCAGGTAGTGATCATGACAGAGCAGAGAAAGATAAGTCACATGGTTCAATGGGACCAATCGTAATAATACGGGGTTCATCTGCTGTAAAGGGTCTTGAGGGTGCTGAGTTGCTGGACACTCTTGTTACCTATTTGTGGCGTATCCATGGTGTGGATTACTATGGGATGTCTGAGACAAATGAGCCCAAAGGTCTAAGGCATGTGAAAGCAGATTCAAGGACGTTTAATGGGGCTAGCTCAAATGCAGCTGAATGGGAGAAGAAACTTGATTCCTTCTGGCAAGATAGGATTCAAGGCCAGGATCCAATGGAAATATTGAAAGCAAAGGATAAGATTGATGCAGCTGCTAGTGAAGTGCTGGATCCACATGTGAGAAAAATAAGGGATGAAAAGTATGGATGGAAATATGGCTGTGGAGCTAAGGGCTGCACAAAACTTTTCCATGCCCCTGAGTTTGTCCAGAAGCATCTCAAACTCAAACATGCGGATTTGGTTAGGGAACTGACTTCGAAAGTGAGAGAAAATATTTATTTTGATAACTATATGAGTGATCCCAAGGCACCTGGTGGGATGCCTATCATGCAGCAACCTGCTCCAAGGGAGAAAGTCAGACAGCGGCCACCAATAGAGAGTCGGCTGAGAGATGAGCGTGGCAATCGTAGGTTTGATAGAAATGATTCACCAACCCATGATGGATCCAGTGACAACCCTGATGATGCATATGATTCTTATGGTGATCCGGTTATGCATGGCGCCTTTCCTCCGGATATTCCTGCTCCTCCAGTGTTGATGCCTGTGCCTGGTGCTGGCCCACTAGGACCATTTATTCCTGCACCACCTGAAGTTGCTATGCGTATGATGAGAGATCAGGGTGGACCACCACCTTTTGAGCCAACTGGTGGTCCACGTCCTAGGAGACCAGGGAGGGGTGGTCTTCCAATGGGTGGCCCATCACCAATTCTTGCTGCTCCTTTACCACCCCCTCATATGCATGATCCACGCAAAATACGAAGCTATCAAGACCTTGATGCTCCTGAAGATGAAGTGACTGTTATGGACTACCGAAGCTTGTAGAGGAATTGGAGACACGATCCTTTTTTGTATCTGGGAAACTGTAGGTAATATTACAGACCGCAACAAGACGGCATTCATTTCTAGATTTTTTTGTGAACGCAAACAGGTAGGACTTTGAGGTTCGGAGCTCTGTTACTGTCTGTAAAATGGATCACAGGAAAACCTGGGACAAGGAGCATATTCTCATTCACCAATCACCACTCACCTGAAAAGAAAACATTGTGAAGTTTGTTCTTTGCAAAAAAGTTCCTAGCACTGTCCATTCCAACCAAATGTCTACAAGCCTGCCATATCATCAGGTATTCGTACCGTATTTGTATATTCAGCTACTGGGTGTGAGTAGATTGGAACCTGATACATCGGCGTATGCACAGACTTTCTATGAAGCCCGTTATGAAGAACATTTGTTCCCCATCTGCTAAGTTTGAGTTCAACCTTGTCAGCTTGAAGAGTGTCCCAGTTCACCAGTCAGTATTGTATCAGTTCTTGCCATTTGATCAAGCTTAGTGTTGTCCCATTCCTTACCATTGATGAAGCTTCTGTCAAAATGGGAATATATACACCTCGGATGACTGAAGAATGACTAAAGTCACCTGCATATATTAGCAGAATAAAAGAAAAAACTATTGGCCAGGAAGATTGTTTTTT
- >LOC_Os08g40560.2 cDNA GACCAGCCTCCGAGGAGCCACACGACGAGTCAAAAACACAGGGCCCTTCCCCTTCTCGCCGTCTCTCCTCTTCGCATCGTCTTCCTCCGCCTTCCCCGAATCCCCCGCTCCCCGACACCACACCGCGAGATCCTCCTCTTCCAGATCAAGCACCCACCCTACCTAGGGTTTCCACCCCGCCATGGCCGAGGTCGCCCGCGCCTCGGCTTCCCCACCTCCCGCCTCCGCCTCCACCGGCGGCGACCGCAAGCGTGGCCGCTCCTCCCCGTCGCTCCCGCCGCCGCCGCCCGGGCCCCCTCCGCAGGTCCCGCATGGGAGCAAGAGGCACCGCAGGGACGAGGGGGGCGGGGGCGGGTTCGATCGGCGCCGCCTCGGGCCGGGAGTAGGGTACGACAACCCGGACGATAGGAGGTATGGAAATGATCATGGTGGTGCAGGAGGAAGAGGTGGATATGGGGATGAGAGAGGTCAGGGTAGAAACTTCAATCGTGCACCAGATTGGACTGATTCTGGACGTGGTGGATGGAATGATGGCCCGGCTAACTCTCGTAGGGAAGGCCTCATGTCTTACAAGCAGTTCATGCAGGAGCTTGAAGATGATGTTTCGCCTGATGAAGCTCAACACAGATATGAGGAGTACAAGTCAGAGTACATAACAACTCAGAAGAAAGCGTACTTTGACCTTCATAAGAACGACGACTGGCTGAAAAACAAGTACCATCCGACTAACCTTGAAATTGTCATGGAAAGAAGGAATGAACTTGCACGAACTGCTGCAAATCAATTCCTCCAAGATTTGCAGAATGGGAGTTTAGACATTGGTCCAGGATTAACAAGTTCTGCAACAAACAAATCTGGGAATAGCGTAGATGATACGGATGCTAATGGAAAAAAGGGGAAACTTGGAAAGAGCCAAGATGATTTATATTATGCTGCTCCTAAGGCTCATCCAGTTAGCTCTGAGCCCCGTCGAATTAGAATTGACGTTGAGCTAGCTCAAGCTCTCATTTGTAAACTTGATTCAGAGAAGGGTATTGAGAATAATGTTCTGTCAGGTAGTGATCATGACAGAGCAGAGAAAGATAAGTCACATGGTTCAATGGGACCAATCGTAATAATACGGGGTTCATCTGCTGTAAAGGGTCTTGAGGGTGCTGAGTTGCTGGACACTCTTGTTACCTATTTGTGGCGTATCCATGGTGTGGATTACTATGGGATGTCTGAGACAAATGAGCCCAAAGGTCTAAGGCATGTGAAAGCAGATTCAAGGACGTTTAATGGGGCTAGCTCAAATGCAGCTGAATGGGAGAAGAAACTTGATTCCTTCTGGCAAGATAGGATTCAAGGCCAGGATCCAATGGAAATATTGAAAGCAAAGGATAAGATTGATGCAGCTGCTAGTGAAGTGCTGGATCCACATGTGAGAAAAATAAGGGATGAAAAGTATGGATGGAAATATGGCTGTGGAGCTAAGGGCTGCACAAAACTTTTCCATGCCCCTGAGTTTGTCCAGAAGCATCTCAAACTCAAACATGCGGATTTGGTTAGGGAACTGACTTCGAAAGTGAGAGAAAATATTTATTTTGATAACTATATGAGTGATCCCAAGGCACCTGGTGGGATGCCTATCATGCAGCAACCTGCTCCAAGGGAGAAAGTCAGACAGCGGCCACCAATAGAGAGTCGGCTGAGAGATGAGCGTGGCAATCGTAGGTTTGATAGAAATGATTCACCAACCCATGATGGATCCAGTGACAACCCTGATGATGCATATGATTCTTATGGTGATCCGGTTATGCATGGCGCCTTTCCTCCGGATATTCCTGCTCCTCCAGTGTTGATGCCTGTGCCTGGTGCTGGCCCACTAGGACCATTTATTCCTGCACCACCTGAAGTTGCTATGCGTATGATGAGAGATCAGGGTGGACCACCACCTTTTGAGCCAACTGGTGGTCCACGTCCTAGGAGACCAGGGAGGGGTGGTCTTCCAATGGGTGGCCCATCACCAATTCTTGCTGCTCCTTTACCACCCCCTCATATGCATGATCCACGCAAAATACGAAGCTATCAAGACCTTGATGCTCCTGAAGATGAAGTGACTGTTATGGACTACCGAAGCTTGTAGAGGAATTGGAGACACGATCCTTTTTTGTATCTGGGAAACTGTAGGTAATATTACAGACCGCAACAAGACGGCATTCATTTCTAGATTTTTTTGTGAACGCAAACAGGTAGGACTTTGAGGTTCGGAGCTCTGTTACTGTCTGTAAAATGGATCACAGGAAAACCTGGGACAAGGAGCATATTCTCATTCACCAATCACCACTCACCTGAAAAGAAAACATTGTGAAGTTTGTTCTTTGCAAAAAAGTTCCTAGCACTGTCCATTCCAACCAAATGTCTACAAGCCTGCCATATCATCAGGTATTCGTACCGTATTTGTATATTCAGCTACTGGGTGTGAGTAGATTGGAACCTGATACATCGGCGTATGCACAGACTTTCTATGAAGCCCGTTATGAAGAACATTTGTTCCCCATCTGCTAAGTTTGAGTTCAACCTTGTCAGCTTGAAGAGTGTCCCAGTTCACCAGTCAGTATTGTATCAGTTCTTGCCATTTGATCAAGCTTAGTGTTGTCCCATTCCTTACCATTGATGAAGCTTCTGTCAAAATGGGAATATATACACCTCGGATGACTGAAGAATGACTAAAGTCACCTGCATATATTAGCAGAATAAAAGAAAAAACTATTGGCCAGGAAGATTGTTTTTT
CDS Sequence
- >LOC_Os08g40560.1 CDS ATGGCCGAGGTCGCCCGCGCCTCGGCTTCCCCACCTCCCGCCTCCGCCTCCACCGGCGGCGACCGCAAGCGTGGCCGCTCCTCCCCGTCGCTCCCGCCGCCGCCGCCCGGGCCCCCTCCGCAGGTCCCGCATGGGAGCAAGAGGCACCGCAGGGACGAGGGGGGCGGGGGCGGGTTCGATCGGCGCCGCCTCGGGCCGGGAGTAGGGTACGACAACCCGGACGATAGGAGGTATGGAAATGATCATGGTGGTGCAGGAGGAAGAGGTGGATATGGGGATGAGAGAGGTCAGGGTAGAAACTTCAATCGTGCACCAGATTGGACTGATTCTGGACGTGGTGGATGGAATGATGGCCCGGCTAACTCTCGTAGGGAAGGCCTCATGTCTTACAAGCAGTTCATGCAGGAGCTTGAAGATGATGTTTCGCCTGATGAAGCTCAACACAGATATGAGGAGTACAAGTCAGAGTACATAACAACTCAGAAGAAAGCGTACTTTGACCTTCATAAGAACGACGACTGGCTGAAAAACAAGTACCATCCGACTAACCTTGAAATTGTCATGGAAAGAAGGAATGAACTTGCACGAACTGCTGCAAATCAATTCCTCCAAGATTTGCAGAATGGGAGTTTAGACATTGGTCCAGGATTAACAAGTTCTGCAACAAACAAATCTGGGAATAGCGTAGATGATACGGATGCTAATGGAAAAAAGGGGAAACTTGGAAAGAGCCAAGATGATTTATATTATGCTGCTCCTAAGGCTCATCCAGTTAGCTCTGAGCCCCGTCGAATTAGAATTGACGTTGAGCTAGCTCAAGCTCTCATTTGTAAACTTGATTCAGAGAAGGGTATTGAGAATAATGTTCTGTCAGGTAGTGATCATGACAGAGCAGAGAAAGATAAGTCACATGGTTCAATGGGACCAATCGTAATAATACGGGGTTCATCTGCTGTAAAGGGTCTTGAGGGTGCTGAGTTGCTGGACACTCTTGTTACCTATTTGTGGCGTATCCATGGTGTGGATTACTATGGGATGTCTGAGACAAATGAGCCCAAAGGTCTAAGGCATGTGAAAGCAGATTCAAGGACGTTTAATGGGGCTAGCTCAAATGCAGCTGAATGGGAGAAGAAACTTGATTCCTTCTGGCAAGATAGGATTCAAGGCCAGGATCCAATGGAAATATTGAAAGCAAAGGATAAGATTGATGCAGCTGCTAGTGAAGTGCTGGATCCACATGTGAGAAAAATAAGGGATGAAAAGTATGGATGGAAATATGGCTGTGGAGCTAAGGGCTGCACAAAACTTTTCCATGCCCCTGAGTTTGTCCAGAAGCATCTCAAACTCAAACATGCGGATTTGGTTAGGGAACTGACTTCGAAAGTGAGAGAAAATATTTATTTTGATAACTATATGAGTGATCCCAAGGCACCTGGTGGGATGCCTATCATGCAGCAACCTGCTCCAAGGGAGAAAGTCAGACAGCGGCCACCAATAGAGAGTCGGCTGAGAGATGAGCGTGGCAATCGTAGGTTTGATAGAAATGATTCACCAACCCATGATGGATCCAGTGACAACCCTGATGATGCATATGATTCTTATGGTGATCCGGTTATGCATGGCGCCTTTCCTCCGGATATTCCTGCTCCTCCAGTGTTGATGCCTGTGCCTGGTGCTGGCCCACTAGGACCATTTATTCCTGCACCACCTGAAGTTGCTATGCGTATGATGAGAGATCAGGGTGGACCACCACCTTTTGAGCCAACTGGTGGTCCACGTCCTAGGAGACCAGGGAGGGGTGGTCTTCCAATGGGTGGCCCATCACCAATTCTTGCTGCTCCTTTACCACCCCCTCATATGCATGATCCACGCAAAATACGAAGCTATCAAGACCTTGATGCTCCTGAAGATGAAGTGACTGTTATGGACTACCGAAGCTTGTAG
- >LOC_Os08g40560.2 CDS ATGGCCGAGGTCGCCCGCGCCTCGGCTTCCCCACCTCCCGCCTCCGCCTCCACCGGCGGCGACCGCAAGCGTGGCCGCTCCTCCCCGTCGCTCCCGCCGCCGCCGCCCGGGCCCCCTCCGCAGGTCCCGCATGGGAGCAAGAGGCACCGCAGGGACGAGGGGGGCGGGGGCGGGTTCGATCGGCGCCGCCTCGGGCCGGGAGTAGGGTACGACAACCCGGACGATAGGAGGTATGGAAATGATCATGGTGGTGCAGGAGGAAGAGGTGGATATGGGGATGAGAGAGGTCAGGGTAGAAACTTCAATCGTGCACCAGATTGGACTGATTCTGGACGTGGTGGATGGAATGATGGCCCGGCTAACTCTCGTAGGGAAGGCCTCATGTCTTACAAGCAGTTCATGCAGGAGCTTGAAGATGATGTTTCGCCTGATGAAGCTCAACACAGATATGAGGAGTACAAGTCAGAGTACATAACAACTCAGAAGAAAGCGTACTTTGACCTTCATAAGAACGACGACTGGCTGAAAAACAAGTACCATCCGACTAACCTTGAAATTGTCATGGAAAGAAGGAATGAACTTGCACGAACTGCTGCAAATCAATTCCTCCAAGATTTGCAGAATGGGAGTTTAGACATTGGTCCAGGATTAACAAGTTCTGCAACAAACAAATCTGGGAATAGCGTAGATGATACGGATGCTAATGGAAAAAAGGGGAAACTTGGAAAGAGCCAAGATGATTTATATTATGCTGCTCCTAAGGCTCATCCAGTTAGCTCTGAGCCCCGTCGAATTAGAATTGACGTTGAGCTAGCTCAAGCTCTCATTTGTAAACTTGATTCAGAGAAGGGTATTGAGAATAATGTTCTGTCAGGTAGTGATCATGACAGAGCAGAGAAAGATAAGTCACATGGTTCAATGGGACCAATCGTAATAATACGGGGTTCATCTGCTGTAAAGGGTCTTGAGGGTGCTGAGTTGCTGGACACTCTTGTTACCTATTTGTGGCGTATCCATGGTGTGGATTACTATGGGATGTCTGAGACAAATGAGCCCAAAGGTCTAAGGCATGTGAAAGCAGATTCAAGGACGTTTAATGGGGCTAGCTCAAATGCAGCTGAATGGGAGAAGAAACTTGATTCCTTCTGGCAAGATAGGATTCAAGGCCAGGATCCAATGGAAATATTGAAAGCAAAGGATAAGATTGATGCAGCTGCTAGTGAAGTGCTGGATCCACATGTGAGAAAAATAAGGGATGAAAAGTATGGATGGAAATATGGCTGTGGAGCTAAGGGCTGCACAAAACTTTTCCATGCCCCTGAGTTTGTCCAGAAGCATCTCAAACTCAAACATGCGGATTTGGTTAGGGAACTGACTTCGAAAGTGAGAGAAAATATTTATTTTGATAACTATATGAGTGATCCCAAGGCACCTGGTGGGATGCCTATCATGCAGCAACCTGCTCCAAGGGAGAAAGTCAGACAGCGGCCACCAATAGAGAGTCGGCTGAGAGATGAGCGTGGCAATCGTAGGTTTGATAGAAATGATTCACCAACCCATGATGGATCCAGTGACAACCCTGATGATGCATATGATTCTTATGGTGATCCGGTTATGCATGGCGCCTTTCCTCCGGATATTCCTGCTCCTCCAGTGTTGATGCCTGTGCCTGGTGCTGGCCCACTAGGACCATTTATTCCTGCACCACCTGAAGTTGCTATGCGTATGATGAGAGATCAGGGTGGACCACCACCTTTTGAGCCAACTGGTGGTCCACGTCCTAGGAGACCAGGGAGGGGTGGTCTTCCAATGGGTGGCCCATCACCAATTCTTGCTGCTCCTTTACCACCCCCTCATATGCATGATCCACGCAAAATACGAAGCTATCAAGACCTTGATGCTCCTGAAGATGAAGTGACTGTTATGGACTACCGAAGCTTGTAG
Protein Sequence
- >LOC_Os08g40560.1 protein MAEVARASASPPPASASTGGDRKRGRSSPSLPPPPPGPPPQVPHGSKRHRRDEGGGGGFDRRRLGPGVGYDNPDDRRYGNDHGGAGGRGGYGDERGQGRNFNRAPDWTDSGRGGWNDGPANSRREGLMSYKQFMQELEDDVSPDEAQHRYEEYKSEYITTQKKAYFDLHKNDDWLKNKYHPTNLEIVMERRNELARTAANQFLQDLQNGSLDIGPGLTSSATNKSGNSVDDTDANGKKGKLGKSQDDLYYAAPKAHPVSSEPRRIRIDVELAQALICKLDSEKGIENNVLSGSDHDRAEKDKSHGSMGPIVIIRGSSAVKGLEGAELLDTLVTYLWRIHGVDYYGMSETNEPKGLRHVKADSRTFNGASSNAAEWEKKLDSFWQDRIQGQDPMEILKAKDKIDAAASEVLDPHVRKIRDEKYGWKYGCGAKGCTKLFHAPEFVQKHLKLKHADLVRELTSKVRENIYFDNYMSDPKAPGGMPIMQQPAPREKVRQRPPIESRLRDERGNRRFDRNDSPTHDGSSDNPDDAYDSYGDPVMHGAFPPDIPAPPVLMPVPGAGPLGPFIPAPPEVAMRMMRDQGGPPPFEPTGGPRPRRPGRGGLPMGGPSPILAAPLPPPHMHDPRKIRSYQDLDAPEDEVTVMDYRSL*
- >LOC_Os08g40560.2 protein MAEVARASASPPPASASTGGDRKRGRSSPSLPPPPPGPPPQVPHGSKRHRRDEGGGGGFDRRRLGPGVGYDNPDDRRYGNDHGGAGGRGGYGDERGQGRNFNRAPDWTDSGRGGWNDGPANSRREGLMSYKQFMQELEDDVSPDEAQHRYEEYKSEYITTQKKAYFDLHKNDDWLKNKYHPTNLEIVMERRNELARTAANQFLQDLQNGSLDIGPGLTSSATNKSGNSVDDTDANGKKGKLGKSQDDLYYAAPKAHPVSSEPRRIRIDVELAQALICKLDSEKGIENNVLSGSDHDRAEKDKSHGSMGPIVIIRGSSAVKGLEGAELLDTLVTYLWRIHGVDYYGMSETNEPKGLRHVKADSRTFNGASSNAAEWEKKLDSFWQDRIQGQDPMEILKAKDKIDAAASEVLDPHVRKIRDEKYGWKYGCGAKGCTKLFHAPEFVQKHLKLKHADLVRELTSKVRENIYFDNYMSDPKAPGGMPIMQQPAPREKVRQRPPIESRLRDERGNRRFDRNDSPTHDGSSDNPDDAYDSYGDPVMHGAFPPDIPAPPVLMPVPGAGPLGPFIPAPPEVAMRMMRDQGGPPPFEPTGGPRPRRPGRGGLPMGGPSPILAAPLPPPHMHDPRKIRSYQDLDAPEDEVTVMDYRSL*