Gene Details:
- MSU gene ID: LOC_Os09g11480
- RAPdb gene ID: Os09g0287000
- Gene Symbol: Sub1B
- Genome: MSU7 , IRGSP-1.0
- Species: Oryza sativa
Functional Descriptions:
- Sequencing the Sub1 region in an FR13A-derived line revealed the presence of three genes encoding putative ethylene responsive factors (ERF), Sub1A, Sub1B and Sub1C and Sub1A were subsequently identified as the major determinant of submergence tolerance.
Function-related keywords:
Literature:
- Development of submergence-tolerant rice cultivars: the Sub1 locus and beyond . DOI: 10.1093/aob/mcn206 ; PMID: 18974101
- The submergence tolerance regulator SUB1A mediates crosstalk between submergence and drought tolerance in rice . DOI: 10.1105/tpc.110.080325 ; PMID: 21239643
Related News:
Gene Resources:
Sequences:
cDNA Sequence
- >LOC_Os09g11480.1 cDNA AGATATTCAGACACACACCTTCAATAACTTGCAAGGATAACTCAAACTACTTGAATCAGATCAGACAAAAACATCATAAGAATATCACGATGTGTGGAGGAGCACTGATCCCGAACGACTATGGCGACAAGCCGCCGCCGCCGCCGTCGGAGTCGTCGGAGTGGGACGCCACAACGAAGATGAAGAAGAAGAAGAAGCGTGGTGGCGGCGGCGACGACGACTGGGAGGCCGCCTTCCGGGAGTTCATCGCTGGCGACGACGACGACGACGACGGCGGCGTTTCCATGTTCCCTTCTGGTGCAGGGACGATGGAGACGACCACAGAGGTGGCGCCGGCGGCGGCGGTGGTGGAGAGGCCGCGGCGGCGGCGAAGGGTGAGGCGGAGCTACCCGTACCGCGGCGTCCGGCAGCGGCCGTGGGGGCGGTGGGCGTCGGAGATCCGCGACCCCGTCAAGGGCGCCCGCGTCTGGCTCGGCACCTTCGACACCGCCGTCGAGGCCGCGCGCGCCTACGACGCCGAGGCGCGCCGCATCCACGGCCACAAGGCAAGGACCAACTTCCCGCCCGACGAGCCTCCGCTGCCGGCGCCATCGCAGGCGCCGTTCTGCTTCCTGCTCGACGACGACGACGACGACGACGGCGTGGCCCGTGGAAACAGCCCGGCGTCGTCGTCGGCGCCGGACAGAGCCTCCGCTTGCACGACGTCGTCGACGGTGGCGTCCGGCGAGCGAGGCGATGAGCTCATACTGCTGGAGTGCTGCTCCGACGACGTGATGGACAGCCTCCTCGCCGGCTTCGACGTGTCCAGCGAACCACGCAGTGTTTTGGGAATGGTTAATTAGCAGCGCGCACGCCTGATTAGATCGGTACATGTGAAGTACAAGAGAAGTAGTTACTACTAGCTAGGAGCAAATTAACTTGGAGTGCAAGAATAAAATATGCATGTCTCTGCACTACTACTGTAGTGTTAGCAAGTTTGCTCATTGTTCTGTTGTATCCTTTCATGTCCATTTCAGACTTCCCAATGCTACATAAGGATGTACATATGTATGATGTTGTGTGCCTTGTTAATCAATGAATGTAAATATCTTTATATTGCTTTTGTACAACAAAAA
- >LOC_Os09g11480.2 cDNA AGATATTCAGACACACACCTTCAATAACTTGCAAGGATAACTCAAACTACTTGAATCAGATCAGACAAAAACATCATAAGAATATCACGATGTGTGGAGGAGCACTGATCCCGAACGACTATGGCGACAAGCCGCCGCCGCCGCCGTCGGAGTCGTCGGAGTGGGACGCCACAACGAAGATGAAGAAGAAGAAGAAGCGTGGTGGCGGCGGCGACGACGACTGGGAGGCCGCCTTCCGGGAGTTCATCGCTGGCGACGACGACGACGACGACGGCGGCGTTTCCATGTTCCCTTCTGGTGCAGGGACGATGGAGACGACCACAGAGGTGGCGCCGGCGGCGGCGGTGGTGGAGAGGCCGCGGCGGCGGCGAAGGGTGAGGCGGAGCTACCCGTACCGCGGCGTCCGGCAGCGGCCGTGGGGGCGGTGGGCGTCGGAGATCCGCGACCCCGTCAAGGGCGCCCGCGTCTGGCTCGGCACCTTCGACACCGCCGTCGAGGCCGCGCGCGCCTACGACGCCGAGGCGCGCCGCATCCACGGCCACAAGGCAAGGACCAACTTCCCGCCCGACGAGCCTCCGCTGCCGGCGCCATCGCAGGCGCCGTTCTGCTTCCTGCTCGACGACGACGACGACGACGACGGCGTGGCCCGTGGAAACAGCCCGGCGTCGTCGTCGGCGCCGGACAGAGCCTCCGCTTGCACGACGTCGTCGACGGTGGCGTCCGGCGAGCGAGGCGATGAGCTCATACTGCTGGAGTGCTGCTCCGACGACGTGATGGACAGCCTCCTCGCCGGCTTCGACGTGTCCAGCGAACCACGCAGTGTTTTGGGAATGGTTAATTAGCAGCGCGCACGCCTGATTAGATCGGTACATGTGAAGTACAAGAGAAGTAGTTACTACTAGCTAGGAGCAAATTAACTTGGAGTGCAAGAATAAAATATGCATGTCTCTGCACTACTACTGTAGTGTTAGCAAGTTTGCTCATTGTTCTGTTGTATCCTTTCATGTCCATTTCAGACTTCCCAATGCTACATAAGGATGTACATATGTATGATGTTGTGTGCCTTGTTAATCAATGAATGTAAATATCTTTATATTGCTTTTGTACAACAAAAA
CDS Sequence
- >LOC_Os09g11480.1 CDS ATGTGTGGAGGAGCACTGATCCCGAACGACTATGGCGACAAGCCGCCGCCGCCGCCGTCGGAGTCGTCGGAGTGGGACGCCACAACGAAGATGAAGAAGAAGAAGAAGCGTGGTGGCGGCGGCGACGACGACTGGGAGGCCGCCTTCCGGGAGTTCATCGCTGGCGACGACGACGACGACGACGGCGGCGTTTCCATGTTCCCTTCTGGTGCAGGGACGATGGAGACGACCACAGAGGTGGCGCCGGCGGCGGCGGTGGTGGAGAGGCCGCGGCGGCGGCGAAGGGTGAGGCGGAGCTACCCGTACCGCGGCGTCCGGCAGCGGCCGTGGGGGCGGTGGGCGTCGGAGATCCGCGACCCCGTCAAGGGCGCCCGCGTCTGGCTCGGCACCTTCGACACCGCCGTCGAGGCCGCGCGCGCCTACGACGCCGAGGCGCGCCGCATCCACGGCCACAAGGCAAGGACCAACTTCCCGCCCGACGAGCCTCCGCTGCCGGCGCCATCGCAGGCGCCGTTCTGCTTCCTGCTCGACGACGACGACGACGACGACGGCGTGGCCCGTGGAAACAGCCCGGCGTCGTCGTCGGCGCCGGACAGAGCCTCCGCTTGCACGACGTCGTCGACGGTGGCGTCCGGCGAGCGAGGCGATGAGCTCATACTGCTGGAGTGCTGCTCCGACGACGTGATGGACAGCCTCCTCGCCGGCTTCGACGTGTCCAGCGAACCACGCAGTGTTTTGGGAATGGTTAATTAG
- >LOC_Os09g11480.2 CDS ATGTGTGGAGGAGCACTGATCCCGAACGACTATGGCGACAAGCCGCCGCCGCCGCCGTCGGAGTCGTCGGAGTGGGACGCCACAACGAAGATGAAGAAGAAGAAGAAGCGTGGTGGCGGCGGCGACGACGACTGGGAGGCCGCCTTCCGGGAGTTCATCGCTGGCGACGACGACGACGACGACGGCGGCGTTTCCATGTTCCCTTCTGGTGCAGGGACGATGGAGACGACCACAGAGGTGGCGCCGGCGGCGGCGGTGGTGGAGAGGCCGCGGCGGCGGCGAAGGGTGAGGCGGAGCTACCCGTACCGCGGCGTCCGGCAGCGGCCGTGGGGGCGGTGGGCGTCGGAGATCCGCGACCCCGTCAAGGGCGCCCGCGTCTGGCTCGGCACCTTCGACACCGCCGTCGAGGCCGCGCGCGCCTACGACGCCGAGGCGCGCCGCATCCACGGCCACAAGGCAAGGACCAACTTCCCGCCCGACGAGCCTCCGCTGCCGGCGCCATCGCAGGCGCCGTTCTGCTTCCTGCTCGACGACGACGACGACGACGACGGCGTGGCCCGTGGAAACAGCCCGGCGTCGTCGTCGGCGCCGGACAGAGCCTCCGCTTGCACGACGTCGTCGACGGTGGCGTCCGGCGAGCGAGGCGATGAGCTCATACTGCTGGAGTGCTGCTCCGACGACGTGATGGACAGCCTCCTCGCCGGCTTCGACGTGTCCAGCGAACCACGCAGTGTTTTGGGAATGGTTAATTAG
Protein Sequence
- >LOC_Os09g11480.1 protein MCGGALIPNDYGDKPPPPPSESSEWDATTKMKKKKKRGGGGDDDWEAAFREFIAGDDDDDDGGVSMFPSGAGTMETTTEVAPAAAVVERPRRRRRVRRSYPYRGVRQRPWGRWASEIRDPVKGARVWLGTFDTAVEAARAYDAEARRIHGHKARTNFPPDEPPLPAPSQAPFCFLLDDDDDDDGVARGNSPASSSAPDRASACTTSSTVASGERGDELILLECCSDDVMDSLLAGFDVSSEPRSVLGMVN*
- >LOC_Os09g11480.2 protein MCGGALIPNDYGDKPPPPPSESSEWDATTKMKKKKKRGGGGDDDWEAAFREFIAGDDDDDDGGVSMFPSGAGTMETTTEVAPAAAVVERPRRRRRVRRSYPYRGVRQRPWGRWASEIRDPVKGARVWLGTFDTAVEAARAYDAEARRIHGHKARTNFPPDEPPLPAPSQAPFCFLLDDDDDDDGVARGNSPASSSAPDRASACTTSSTVASGERGDELILLECCSDDVMDSLLAGFDVSSEPRSVLGMVN*