Gene Details:
- MSU gene ID: LOC_Os09g20390
- RAPdb gene ID: Os09g0369400
- Gene Symbol: OsTPP7 AG1
- Genome: MSU7 , IRGSP-1.0
- Species: Oryza sativa
Functional Descriptions:
- OsTPP7 activity may increase sink strength in proliferating heterotrophic tissues by indicating low sugar availability through increased T6P turnover, thus enhancing starch mobilization to drive growth kinetics of the germinating embryo and elongating coleoptile, which consequently enhances anaerobic germination tolerance.
- OsTPP7 is involved in trehalose-6-phosphate (T6P) metabolism, central to an energy sensor that determines anabolism or catabolism depending on local sucrose availability(8,9).
- However, the pyramided AG1 SUB1 genotype displays reduced survival when seeds are planted underwater and maintained under submergence for 16 d.
Function-related keywords:
Literature:
- A trehalose-6-phosphate phosphatase enhances anaerobic germination tolerance in rice . DOI: 10.1038/nplants.2015.124 ; PMID: 27250677
- Dissection of coleoptile elongation in japonica rice under submergence through integrated genome-wide association mapping and transcriptional analyses . DOI: 10.1111/pce.13540 ; PMID: 30802973
- Flood resilience loci SUBMERGENCE 1 and ANAEROBIC GERMINATION 1 interact in seedlings established underwater . DOI: 10.1002/pld3.240 ; PMID: 32775950
- Dynamic genome-wide association analysis and identification of candidate genes involved in anaerobic germination tolerance in rice . DOI: 10.1186/s12284-020-00444-x ; PMID: 33409869
Related News:
Gene Resources:
Sequences:
cDNA Sequence
- >LOC_Os09g20390.1 cDNA AAGCAAACCAATCATCACCTCTTCTTCTTGGGGTGTTCTTGACTGGAAGGTTTCTTTGGTGATGGCGAAGGCGAGCGTGGTGGTGCCTGAGCAGGTGGGCGCGGCGGCGGCGGCGCAGGTGGGGTGCCCCTGTCCGGGCACGACGCTGTTCCCGTACCCGCCGCCGCGCGCCGGGATCGCCGTGCGGCGCAAGTGCCTGCAGGCGGCGCAGCAGCTGGAGCTCGGCGCCGGGCTGCGCGGCGGCTGGGTGGAGTCCATGCGGGCGTCGTCGCCCACCCACGCCAAGGCCGCCGCCGCCCTCGCCGCCGGCGTCGACGAGGAGCACGCCGCCTGGATGGCGAGGCACCCGTCGGCGCTGGGCGAGTTCGAGAAGGTGGTGGCGGCGTCGAAGGGGAAGCAGATCGTCATGTTCCTCGACTACGACGGCACCCTCTCCCCCATCGTCGACGACCCCGACGCCGCCTTCATGAGCGAGACGATGCGGATGGCCGTGCGCAGCGTGGCGAAGCACTTCCCGACGGCGATCGTGAGCGGGCGGTGCCGCGACAAGGTGTTCGAGTTCGTGAAGCTCGCCGAGCTGTACTACGCGGGGAGCCACGGCATGGACATCAAGGGCCCCGCCTCCCGCCACGCCGCCGCCAAGTCTCCTCCCCACAACAAGGGAGTCCTCTTCCAGCCGGCCAGCGAGTTCCTCCCCATGATCGAGCAGGTGCACCAGCGACTCGAGCAGGCCACCAGCTCCATCCCGGGCGCCAAGGTCGAGAACAACAAGTTCTGCGTCTCCGTCCACTTCCGGTGCGTCGACGAGAAGAGTTGGGGGGCGTTGGCGGAGACGGTGAGGAGGGTGGTGAGGGAGTTCCCGCGGCTGCGGCTGAGCCAGGGGAGGATGGTGTTCGAGGTGCGGCCGACCATCAAGTGGGACAAGGGCAAGGCCCTCGAGTTCCTCCTCGACTCGCTCGGTTTCGCCGACTGCAGCGACGTGCTGCCGGTCTACATCGGCGACGACCGCACGGACGAGGACGCGTTCAAGGTTTTGCGGCGGCGTGGGCAGGGCGTGGGGATCCTGGTGTCCAAGCACCCCAAGGAGACGAGCGCCTCCTTCTCCCTCCAGGAGCCCGCCGAGGTGATGGAGTTCTTGCTGCGGCTCGTGGAGTGGAATCGCCTGTCCAGGACACGGTTGAGGCTGTAACAATTGAATTTAACCGGCGAGGCTAGCTAGAGAGAAGCGCGTGATCTGGGCCGTCCAAGCGATTACATCGGCAGGGTAACCCGTGACGCTGATCGATCGTGGATTCTACACCAACACAGGTGCTCGAAAATGGTGTCCACATTGCAGAAGCGCAGAGAGCTAATTAATCAACGACGGACGAGAGAAACTGATGGCTGTCTGGCCATTGTTGTGCCATAATCCTGTTTAGTTCTTCACCTTTCTCCCTTCTTCTTTTTTCCCATTTGGGGCCCCCCTTTTGGTACCAACCATGTAAATTCCGTACTACTAGTACCTTGTCATGCACAAGAGGAAGATCAATGCAAATAATGAAGAGCAACTAATGCAAGTATATACTCATCAGCACA
- >LOC_Os09g20390.2 cDNA AAGCAAACCAATCATCACCTCTTCTTCTTGGGGTGTTCTTGACTGGAAGGTTTCTTTGGTGATGGCGAAGGCGAGCGTGGTGGTGCCTGAGCAGGTGGGCGCGGCGGCGGCGGCGCAGGTGGGGTGCCCCTGTCCGGGCACGACGCTGTTCCCGTACCCGCCGCCGCGCGCCGGGATCGCCGTGCGGCGCAAGTGCCTGCAGGCGGCGCAGCAGCTGGAGCTCGGCGCCGGGCTGCGCGGCGGCTGGGTGGAGTCCATGCGGGCGTCGTCGCCCACCCACGCCAAGGCCGCCGCCGCCCTCGCCGCCGGCGTCGACGAGGAGCACGCCGCCTGGATGGCGAGGCACCCGTCGGCGCTGGGCGAGTTCGAGAAGGTGGTGGCGGCGTCGAAGGGGAAGCAGATCGTCATGTTCCTCGACTACGACGGCACCCTCTCCCCCATCGTCGACGACCCCGACGCCGCCTTCATGAGCGAGACGATGCGGATGGCCGTGCGCAGCGTGGCGAAGCACTTCCCGACGGCGATCGTGAGCGGGCGGTGCCGCGACAAGGTGTTCGAGTTCGTGAAGCTCGCCGAGCTGTACTACGCGGGGAGCCACGGCATGGACATCAAGGGCCCCGCCTCCCGCCACGCCGCCGCCAAGTCTCCTCCCCACAACAAGGGAGTCCTCTTCCAGCCGGCCAGCGAGTTCCTCCCCATGATCGAGCAGGTGCACCAGCGACTCGAGCAGGCCACCAGCTCCATCCCGGGCGCCAAGGTCGAGAACAACAAGTTCTGCGTCTCCGTCCACTTCCGGTGCGTCGACGAGAAGAGTTGGGGGGCGTTGGCGGAGACGGTGAGGAGGGTGGTGAGGGAGTTCCCGCGGCTGCGGCTGAGCCAGGGGAGGATGGTGTTCGAGGTGCGGCCGACCATCAAGTGGGACAAGGGCAAGGCCCTCGAGTTCCTCCTCGACTCGCTCGGTTTCGCCGACTGCAGCGACGTGCTGCCGGTCTACATCGGCGACGACCGCACGGACGAGGACGCGTTCAAGGTTTTGCGGCGGCGTGGGCAGGGCGTGGGGATCCTGGTGTCCAAGCACCCCAAGGAGACGAGCGCCTCCTTCTCCCTCCAGGAGCCCGCCGAGGTGATGGAGTTCTTGCTGCGGCTCGTGGAGTGGAATCGCCTGTCCAGGACACGGTTGAGGCTGTAACAATTGAATTTAACCGGCGAGGCTAGCTAGAGAGAAGCGCGTGATCTGGGCCGTCCAAGCGATTACATCGGCAGGGTAACCCGTGACGCTGATCGATCGTGGATTCTACACCAACACAGGTGCTCGAAAATGGTGTCCACATTGCAGAAGCGCAGAGAGCTAATTAATCAACGACGGACGAGAGAAACTGATGGCTGTCTGGCCATTGTTGTGCCATAATCCTGTTTAGTTCTTCACCTTTCTCCCTTCTTCTTTTTTCCCATTTGGGGCCCCCCTTTTGGTACCAACCATGTAAATTCCGTACTACTAGTACCTTGTCATGCACAAGAGGAAGATCAATGCAAATAATGAAGAGCAACTAATGCAAGTATATACTCATCAGCACA
- >LOC_Os09g20390.3 cDNA AAGCAAACCAATCATCACCTCTTCTTCTTGGGGTGTTCTTGACTGGAAGGTTTCTTTGGTGATGGCGAAGGCGAGCGTGGTGGTGCCTGAGCAGGTGGGCGCGGCGGCGGCGGCGCAGGTGGGGTGCCCCTGTCCGGGCACGACGCTGTTCCCGTACCCGCCGCCGCGCGCCGGGATCGCCGTGCGGCGCAAGTGCCTGCAGGCGGCGCAGCAGCTGGAGCTCGGCGCCGGGCTGCGCGGCGGCTGGGTGGAGTCCATGCGGGCGTCGTCGCCCACCCACGCCAAGGCCGCCGCCGCCCTCGCCGCCGGCGTCGACGAGGAGCACGCCGCCTGGATGGCGAGGCACCCGTCGGCGCTGGGCGAGTTCGAGAAGGTGGTGGCGGCGTCGAAGGGGAAGCAGATCGTCATGTTCCTCGACTACGACGGCACCCTCTCCCCCATCGTCGACGACCCCGACGCCGCCTTCATGAGCGAGACGATGCGGATGGCCGTGCGCAGCGTGGCGAAGCACTTCCCGACGGCGATCGTGAGCGGGCGGTGCCGCGACAAGGTGTTCGAGTTCGTGAAGCTCGCCGAGCTGTACTACGCGGGGAGCCACGGCATGGACATCAAGGGCCCCGCCTCCCGCCACGCCGCCGCCAAGTCTCCTCCCCACAACAAGGGAGTCCTCTTCCAGCCGGCCAGCGAGTTCCTCCCCATGATCGAGCAGGTGCACCAGCGACTCGAGCAGGCCACCAGCTCCATCCCGGGCGCCAAGGTCGAGAACAACAAGTTCTGCGTCTCCGTCCACTTCCGGTGCGTCGACGAGAAGAGTTGGGGGGCGTTGGCGGAGACGGTGAGGAGGGTGGTGAGGGAGTTCCCGCGGCTGCGGCTGAGCCAGGGGAGGATGGTGTTCGAGGTGCGGCCGACCATCAAGTGGGACAAGGGCAAGGCCCTCGAGTTCCTCCTCGACTCGCTCGGTTTCGCCGACTGCAGCGACGTGCTGCCGGTCTACATCGGCGACGACCGCACGGACGAGGACGCGTTCAAGGTTTTGCGGCGGCGTGGGCAGGGCGTGGGGATCCTGGTGTCCAAGCACCCCAAGGAGACGAGCGCCTCCTTCTCCCTCCAGGAGCCCGCCGAGGTGATGGAGTTCTTGCTGCGGCTCGTGGAGTGGAATCGCCTGTCCAGGACACGGTTGAGGCTGTAACAATTGAATTTAACCGGCGAGGCTAGCTAGAGAGAAGCGCGTGATCTGGGCCGTCCAAGCGATTACATCGGCAGGGTAACCCGTGACGCTGATCGATCGTGGATTCTACACCAACACAGGTGCTCGAAAATGGTGTCCACATTGCAGAAGCGCAGAGAGCTAATTAATCAACGACGGACGAGAGAAACTGATGGCTGTCTGGCCATTGTTGTGCCATAATCCTGTTTAGTTCTTCACCTTTCTCCCTTCTTCTTTTTTCCCATTTGGGGCCCCCCTTTTGGTACCAACCATGTAAATTCCGTACTACTAGTACCTTGTCATGCACAAGAGGAAGATCAATGCAAATAATGAAGAGCAACTAATGCAAGTATATACTCATCAGCACA
CDS Sequence
- >LOC_Os09g20390.1 CDS ATGGCGAAGGCGAGCGTGGTGGTGCCTGAGCAGGTGGGCGCGGCGGCGGCGGCGCAGGTGGGGTGCCCCTGTCCGGGCACGACGCTGTTCCCGTACCCGCCGCCGCGCGCCGGGATCGCCGTGCGGCGCAAGTGCCTGCAGGCGGCGCAGCAGCTGGAGCTCGGCGCCGGGCTGCGCGGCGGCTGGGTGGAGTCCATGCGGGCGTCGTCGCCCACCCACGCCAAGGCCGCCGCCGCCCTCGCCGCCGGCGTCGACGAGGAGCACGCCGCCTGGATGGCGAGGCACCCGTCGGCGCTGGGCGAGTTCGAGAAGGTGGTGGCGGCGTCGAAGGGGAAGCAGATCGTCATGTTCCTCGACTACGACGGCACCCTCTCCCCCATCGTCGACGACCCCGACGCCGCCTTCATGAGCGAGACGATGCGGATGGCCGTGCGCAGCGTGGCGAAGCACTTCCCGACGGCGATCGTGAGCGGGCGGTGCCGCGACAAGGTGTTCGAGTTCGTGAAGCTCGCCGAGCTGTACTACGCGGGGAGCCACGGCATGGACATCAAGGGCCCCGCCTCCCGCCACGCCGCCGCCAAGTCTCCTCCCCACAACAAGGGAGTCCTCTTCCAGCCGGCCAGCGAGTTCCTCCCCATGATCGAGCAGGTGCACCAGCGACTCGAGCAGGCCACCAGCTCCATCCCGGGCGCCAAGGTCGAGAACAACAAGTTCTGCGTCTCCGTCCACTTCCGGTGCGTCGACGAGAAGAGTTGGGGGGCGTTGGCGGAGACGGTGAGGAGGGTGGTGAGGGAGTTCCCGCGGCTGCGGCTGAGCCAGGGGAGGATGGTGTTCGAGGTGCGGCCGACCATCAAGTGGGACAAGGGCAAGGCCCTCGAGTTCCTCCTCGACTCGCTCGGTTTCGCCGACTGCAGCGACGTGCTGCCGGTCTACATCGGCGACGACCGCACGGACGAGGACGCGTTCAAGGTTTTGCGGCGGCGTGGGCAGGGCGTGGGGATCCTGGTGTCCAAGCACCCCAAGGAGACGAGCGCCTCCTTCTCCCTCCAGGAGCCCGCCGAGGTGATGGAGTTCTTGCTGCGGCTCGTGGAGTGGAATCGCCTGTCCAGGACACGGTTGAGGCTGTAA
- >LOC_Os09g20390.2 CDS ATGGCGAAGGCGAGCGTGGTGGTGCCTGAGCAGGTGGGCGCGGCGGCGGCGGCGCAGGTGGGGTGCCCCTGTCCGGGCACGACGCTGTTCCCGTACCCGCCGCCGCGCGCCGGGATCGCCGTGCGGCGCAAGTGCCTGCAGGCGGCGCAGCAGCTGGAGCTCGGCGCCGGGCTGCGCGGCGGCTGGGTGGAGTCCATGCGGGCGTCGTCGCCCACCCACGCCAAGGCCGCCGCCGCCCTCGCCGCCGGCGTCGACGAGGAGCACGCCGCCTGGATGGCGAGGCACCCGTCGGCGCTGGGCGAGTTCGAGAAGGTGGTGGCGGCGTCGAAGGGGAAGCAGATCGTCATGTTCCTCGACTACGACGGCACCCTCTCCCCCATCGTCGACGACCCCGACGCCGCCTTCATGAGCGAGACGATGCGGATGGCCGTGCGCAGCGTGGCGAAGCACTTCCCGACGGCGATCGTGAGCGGGCGGTGCCGCGACAAGGTGTTCGAGTTCGTGAAGCTCGCCGAGCTGTACTACGCGGGGAGCCACGGCATGGACATCAAGGGCCCCGCCTCCCGCCACGCCGCCGCCAAGTCTCCTCCCCACAACAAGGGAGTCCTCTTCCAGCCGGCCAGCGAGTTCCTCCCCATGATCGAGCAGGTGCACCAGCGACTCGAGCAGGCCACCAGCTCCATCCCGGGCGCCAAGGTCGAGAACAACAAGTTCTGCGTCTCCGTCCACTTCCGGTGCGTCGACGAGAAGAGTTGGGGGGCGTTGGCGGAGACGGTGAGGAGGGTGGTGAGGGAGTTCCCGCGGCTGCGGCTGAGCCAGGGGAGGATGGTGTTCGAGGTGCGGCCGACCATCAAGTGGGACAAGGGCAAGGCCCTCGAGTTCCTCCTCGACTCGCTCGGTTTCGCCGACTGCAGCGACGTGCTGCCGGTCTACATCGGCGACGACCGCACGGACGAGGACGCGTTCAAGGTTTTGCGGCGGCGTGGGCAGGGCGTGGGGATCCTGGTGTCCAAGCACCCCAAGGAGACGAGCGCCTCCTTCTCCCTCCAGGAGCCCGCCGAGGTGATGGAGTTCTTGCTGCGGCTCGTGGAGTGGAATCGCCTGTCCAGGACACGGTTGAGGCTGTAA
- >LOC_Os09g20390.3 CDS ATGGCGAAGGCGAGCGTGGTGGTGCCTGAGCAGGTGGGCGCGGCGGCGGCGGCGCAGGTGGGGTGCCCCTGTCCGGGCACGACGCTGTTCCCGTACCCGCCGCCGCGCGCCGGGATCGCCGTGCGGCGCAAGTGCCTGCAGGCGGCGCAGCAGCTGGAGCTCGGCGCCGGGCTGCGCGGCGGCTGGGTGGAGTCCATGCGGGCGTCGTCGCCCACCCACGCCAAGGCCGCCGCCGCCCTCGCCGCCGGCGTCGACGAGGAGCACGCCGCCTGGATGGCGAGGCACCCGTCGGCGCTGGGCGAGTTCGAGAAGGTGGTGGCGGCGTCGAAGGGGAAGCAGATCGTCATGTTCCTCGACTACGACGGCACCCTCTCCCCCATCGTCGACGACCCCGACGCCGCCTTCATGAGCGAGACGATGCGGATGGCCGTGCGCAGCGTGGCGAAGCACTTCCCGACGGCGATCGTGAGCGGGCGGTGCCGCGACAAGGTGTTCGAGTTCGTGAAGCTCGCCGAGCTGTACTACGCGGGGAGCCACGGCATGGACATCAAGGGCCCCGCCTCCCGCCACGCCGCCGCCAAGTCTCCTCCCCACAACAAGGGAGTCCTCTTCCAGCCGGCCAGCGAGTTCCTCCCCATGATCGAGCAGGTGCACCAGCGACTCGAGCAGGCCACCAGCTCCATCCCGGGCGCCAAGGTCGAGAACAACAAGTTCTGCGTCTCCGTCCACTTCCGGTGCGTCGACGAGAAGAGTTGGGGGGCGTTGGCGGAGACGGTGAGGAGGGTGGTGAGGGAGTTCCCGCGGCTGCGGCTGAGCCAGGGGAGGATGGTGTTCGAGGTGCGGCCGACCATCAAGTGGGACAAGGGCAAGGCCCTCGAGTTCCTCCTCGACTCGCTCGGTTTCGCCGACTGCAGCGACGTGCTGCCGGTCTACATCGGCGACGACCGCACGGACGAGGACGCGTTCAAGGTTTTGCGGCGGCGTGGGCAGGGCGTGGGGATCCTGGTGTCCAAGCACCCCAAGGAGACGAGCGCCTCCTTCTCCCTCCAGGAGCCCGCCGAGGTGATGGAGTTCTTGCTGCGGCTCGTGGAGTGGAATCGCCTGTCCAGGACACGGTTGAGGCTGTAA
Protein Sequence
- >LOC_Os09g20390.1 protein MAKASVVVPEQVGAAAAAQVGCPCPGTTLFPYPPPRAGIAVRRKCLQAAQQLELGAGLRGGWVESMRASSPTHAKAAAALAAGVDEEHAAWMARHPSALGEFEKVVAASKGKQIVMFLDYDGTLSPIVDDPDAAFMSETMRMAVRSVAKHFPTAIVSGRCRDKVFEFVKLAELYYAGSHGMDIKGPASRHAAAKSPPHNKGVLFQPASEFLPMIEQVHQRLEQATSSIPGAKVENNKFCVSVHFRCVDEKSWGALAETVRRVVREFPRLRLSQGRMVFEVRPTIKWDKGKALEFLLDSLGFADCSDVLPVYIGDDRTDEDAFKVLRRRGQGVGILVSKHPKETSASFSLQEPAEVMEFLLRLVEWNRLSRTRLRL*
- >LOC_Os09g20390.2 protein MAKASVVVPEQVGAAAAAQVGCPCPGTTLFPYPPPRAGIAVRRKCLQAAQQLELGAGLRGGWVESMRASSPTHAKAAAALAAGVDEEHAAWMARHPSALGEFEKVVAASKGKQIVMFLDYDGTLSPIVDDPDAAFMSETMRMAVRSVAKHFPTAIVSGRCRDKVFEFVKLAELYYAGSHGMDIKGPASRHAAAKSPPHNKGVLFQPASEFLPMIEQVHQRLEQATSSIPGAKVENNKFCVSVHFRCVDEKSWGALAETVRRVVREFPRLRLSQGRMVFEVRPTIKWDKGKALEFLLDSLGFADCSDVLPVYIGDDRTDEDAFKVLRRRGQGVGILVSKHPKETSASFSLQEPAEVMEFLLRLVEWNRLSRTRLRL*
- >LOC_Os09g20390.3 protein MAKASVVVPEQVGAAAAAQVGCPCPGTTLFPYPPPRAGIAVRRKCLQAAQQLELGAGLRGGWVESMRASSPTHAKAAAALAAGVDEEHAAWMARHPSALGEFEKVVAASKGKQIVMFLDYDGTLSPIVDDPDAAFMSETMRMAVRSVAKHFPTAIVSGRCRDKVFEFVKLAELYYAGSHGMDIKGPASRHAAAKSPPHNKGVLFQPASEFLPMIEQVHQRLEQATSSIPGAKVENNKFCVSVHFRCVDEKSWGALAETVRRVVREFPRLRLSQGRMVFEVRPTIKWDKGKALEFLLDSLGFADCSDVLPVYIGDDRTDEDAFKVLRRRGQGVGILVSKHPKETSASFSLQEPAEVMEFLLRLVEWNRLSRTRLRL*