Gene Details:
- MSU gene ID: LOC_Os09g24200
- RAPdb gene ID: Os09g0407200
- Gene Symbol: osRAD23
- Genome: MSU7 , IRGSP-1.0
- Species: Oryza sativa
Functional Descriptions:
- Two of these genes, OsNUC1 and osRAD23 emerged as top candidate genes with splice variants that exhibited significant divergence between the variants for shoot growth under salt stress conditions.
Function-related keywords:
- growth , shoot , salt , salt-stress , stress
Literature:
- Characterization and expression of a rice RAD23 gene . DOI: 10.1023/a:1005870227632 ; PMID: 9225866
- Genome-wide discovery of natural variation in pre-mRNA splicing and prioritising causal alternative splicing to salt stress response in rice . DOI: 10.1111/nph.17189 ; PMID: 33453070
Related News:
Gene Resources:
- NCBI ID: U63530
- UniProt accessions:
Sequences:
cDNA Sequence
- >LOC_Os09g24200.2 cDNA ACCGGTGCCCGAAATAAAAATCGGAGAAAAACTCACGCCCCCATTCCCTCCCCTCTCCCCTCTCCGCCCTAGAGCTCGACGGCGGCGGCAACAAGGGCTGGGGGATGAAGATATCCGTGAAGACACTCAAGGGATCCACCTTCCAGATCGAGGTGGACTCCGCGCAGAAGGTTGCTGATGTGAAAAGGATAATCGAGACTACTCAAGGACAGCACATTTACCCAGCTGAGCAACAGATGCTCATTCATCAGGGGAAGGTGCTCAAGGATGACACCACATTGGATGAAAACAAAGTTCTTGAAAACAGCTTCCTTGTTATAATGCTTAGACAGGGTAAGGGCTCATCAAGTTCAGCTCCTGCTACATCTAAGGCACCCTCAAATCAGGCTCCCCCTACTCAAACAGTGCCTGCAGCTCCTGCATCTCAAGCACCAGTTGCACCAGCAACTACTGTACCTGTCACTGTCAGTGCTCCTACCCCAACTGCCACAGCTTCCCCAGCTCCTGCTGTTGCTGTATCCTCTGAAGCTGATAACTACGGTCAGGCCACCTCAAACCTTGTTGCTGGCAGCAATCTAGAGGCAACAATTCAATCAATTCTTGAAATGGGTGGTGGAATATGGGATAGAGACATTGTGCTGCATGCTCTAAGCGCTGCATTCAACAACCCGGAGAGGGCTGTTGAATATCTGTACTCTGGTGTTCCTGAGCAGATGGACATTCCAGTTCCACCTCCGAGTATACAGCCAGCCAATCCTACCCAGGCTTCACAGGCAACTCAACCAGCAGCTCCATCAATTCTTTCGTCTGGACCAAACGCTAGTCCCTTGGACCTCTTTCCTCAAGCCCTTCCAAATGCTTCCACCGATGCTGCTGGTCTAGGAAATCTTGATGCTTTGCGCAATAATGCACAATTCCGAACCTTGCTTTCTTTAGTGCAAGCCAATCCTCAAATTTTACAGCCATTGCTTCAAGAATTGGGGAAACAAAATCCCCAGATTTTGCAGCTGATTCAGGAAAACCAAGCTGAGTTCCTCCACTTAATCAATGAACCAGCTGAGGGTGATGATGAAGAGAATTTGCTAGACCAGTTTCCAGAGGCAATGCCACAGACCATAGCAGTTACTCCAGAGGAGAATGAAGCCATACTTCGTCTTGAAGCAATGGGCTTTGACCGCGCGCTTGTTCTGGACGTGTTCTTCGCTTGCAACAAGGACGAGCAGCTGGCGGCAAACTATCTCCTAGATCACATGAACGAGTTCGACGACGAGGGGCCACCATAAGACACGCGGATGGAATACTTGTCAAGCTCAAACCTGGTATCATTGGAGCAAAGGGTTTGTGACCCGTAGTCCGTAGAGCAAAAGGCTTAGTAAAACCTTTTTATTTTATTTTATTTTTTTGTGGATTCGTCTCCTTCTGTTCCTTCTTTTCTTTCATTAGTCTGTAATTCTTTTCAGTTTGGCTTTTACTTTCTTGCGTACATACTCTAGATTACCTTTTTTACAGACTTGATAACGGAGGTATAAAAAGGTTCAGAGCCCGTCTGCATTCAACCTTC
- >LOC_Os09g24200.1 cDNA ACCGGTGCCCGAAATAAAAATCGGAGAAAAACTCACGCCCCCATTCCCTCCCCTCTCCCCTCTCCGCCCTAGAGCTCGACGGCGGCGGCAACAAGGGCTGGGGGATGAAGATATCCGTGAAGACACTCAAGGGATCCACCTTCCAGATCGAGGTGGACTCCGCGCAGAAGGTTGCTGATGTGAAAAGGATAATCGAGACTACTCAAGGACAGCACATTTACCCAGCTGAGCAACAGATGCTCATTCATCAGGGGAAGGTGCTCAAGGATGACACCACATTGGATGAAAACAAAGTTCTTGAAAACAGCTTCCTTGTTATAATGCTTAGACAGGGTAAGGGCTCATCAAGTTCAGCTCCTGCTACATCTAAGGCACCCTCAAATCAGGCTCCCCCTACTCAAACAGTGCCTGCAGCTCCTGCATCTCAAGCACCAGTTGCACCAGCAACTACTGTACCTGTCACTGTCAGTGCTCCTACCCCAACTGCCACAGCTTCCCCAGCTCCTGCTGTTGCTGTATCCTCTGAAGCTGATAACTACGGTCAGGCCACCTCAAACCTTGTTGCTGGCAGCAATCTAGAGGCAACAATTCAATCAATTCTTGAAATGGGTGGTGGAATATGGGATAGAGACATTGTGCTGCATGCTCTAAGCGCTGCATTCAACAACCCGGAGAGGGCTGTTGAATATCTGTACTCTGGTGTTCCTGAGCAGATGGACATTCCAGTTCCACCTCCGAGTATACAGCCAGCCAATCCTACCCAGGCTTCACAGGCAACTCAACCAGCAGCTCCATCAATTCTTTCGTCTGGACCAAACGCTAGTCCCTTGGACCTCTTTCCTCAAGCCCTTCCAAATGCTTCCACCGATGCTGCTGGTCTAGGAAATCTTGATGCTTTGCGCAATAATGCACAATTCCGAACCTTGCTTTCTTTAGTGCAAGCCAATCCTCAAATTTTACAGCCATTGCTTCAAGAATTGGGGAAACAAAATCCCCAGATTTTGCAGCTGATTCAGGAAAACCAAGCTGAGTTCCTCCACTTAATCAATGAACCAGCTGAGGGTGATGATGAAGAGAATTTGCTAGACCAGTTTCCAGAGGCAATGCCACAGACCATAGCAGTTACTCCAGAGGAGAATGAAGCCATACTTCGTCTTGAAGCAATGGGCTTTGACCGCGCGCTTGTTCTGGACGTGTTCTTCGCTTGCAACAAGGACGAGCAGCTGGCGGCAAACTATCTCCTAGATCACATGAACGAGTTCGACGACGAGGGGCCACCATAAGACACGCGGATGGAATACTTGTCAAGCTCAAACCTGGTATCATTGGAGCAAAGGGTTTGTGACCCGTAGTCCGTAGAGCAAAAGGCTTAGTAAAACCTTTTTATTTTATTTTATTTTTTTGTGGATTCGTCTCCTTCTGTTCCTTCTTTTCTTTCATTAGTCTGTAATTCTTTTCAGTTTGGCTTTTACTTTCTTGCGTACATACTCTAGATTACCTTTTTTACAGACTTGATAACGGAGGTATAAAAAGGTTCAGAGCCCGTCTGCATTCAACCTTC
CDS Sequence
- >LOC_Os09g24200.2 CDS ATGAAGATATCCGTGAAGACACTCAAGGGATCCACCTTCCAGATCGAGGTGGACTCCGCGCAGAAGGTTGCTGATGTGAAAAGGATAATCGAGACTACTCAAGGACAGCACATTTACCCAGCTGAGCAACAGATGCTCATTCATCAGGGGAAGGTGCTCAAGGATGACACCACATTGGATGAAAACAAAGTTCTTGAAAACAGCTTCCTTGTTATAATGCTTAGACAGGGTAAGGGCTCATCAAGTTCAGCTCCTGCTACATCTAAGGCACCCTCAAATCAGGCTCCCCCTACTCAAACAGTGCCTGCAGCTCCTGCATCTCAAGCACCAGTTGCACCAGCAACTACTGTACCTGTCACTGTCAGTGCTCCTACCCCAACTGCCACAGCTTCCCCAGCTCCTGCTGTTGCTGTATCCTCTGAAGCTGATAACTACGGTCAGGCCACCTCAAACCTTGTTGCTGGCAGCAATCTAGAGGCAACAATTCAATCAATTCTTGAAATGGGTGGTGGAATATGGGATAGAGACATTGTGCTGCATGCTCTAAGCGCTGCATTCAACAACCCGGAGAGGGCTGTTGAATATCTGTACTCTGGTGTTCCTGAGCAGATGGACATTCCAGTTCCACCTCCGAGTATACAGCCAGCCAATCCTACCCAGGCTTCACAGGCAACTCAACCAGCAGCTCCATCAATTCTTTCGTCTGGACCAAACGCTAGTCCCTTGGACCTCTTTCCTCAAGCCCTTCCAAATGCTTCCACCGATGCTGCTGGTCTAGGAAATCTTGATGCTTTGCGCAATAATGCACAATTCCGAACCTTGCTTTCTTTAGTGCAAGCCAATCCTCAAATTTTACAGCCATTGCTTCAAGAATTGGGGAAACAAAATCCCCAGATTTTGCAGCTGATTCAGGAAAACCAAGCTGAGTTCCTCCACTTAATCAATGAACCAGCTGAGGGTGATGATGAAGAGAATTTGCTAGACCAGTTTCCAGAGGCAATGCCACAGACCATAGCAGTTACTCCAGAGGAGAATGAAGCCATACTTCGTCTTGAAGCAATGGGCTTTGACCGCGCGCTTGTTCTGGACGTGTTCTTCGCTTGCAACAAGGACGAGCAGCTGGCGGCAAACTATCTCCTAGATCACATGAACGAGTTCGACGACGAGGGGCCACCATAA
- >LOC_Os09g24200.1 CDS ATGAAGATATCCGTGAAGACACTCAAGGGATCCACCTTCCAGATCGAGGTGGACTCCGCGCAGAAGGTTGCTGATGTGAAAAGGATAATCGAGACTACTCAAGGACAGCACATTTACCCAGCTGAGCAACAGATGCTCATTCATCAGGGGAAGGTGCTCAAGGATGACACCACATTGGATGAAAACAAAGTTCTTGAAAACAGCTTCCTTGTTATAATGCTTAGACAGGGTAAGGGCTCATCAAGTTCAGCTCCTGCTACATCTAAGGCACCCTCAAATCAGGCTCCCCCTACTCAAACAGTGCCTGCAGCTCCTGCATCTCAAGCACCAGTTGCACCAGCAACTACTGTACCTGTCACTGTCAGTGCTCCTACCCCAACTGCCACAGCTTCCCCAGCTCCTGCTGTTGCTGTATCCTCTGAAGCTGATAACTACGGTCAGGCCACCTCAAACCTTGTTGCTGGCAGCAATCTAGAGGCAACAATTCAATCAATTCTTGAAATGGGTGGTGGAATATGGGATAGAGACATTGTGCTGCATGCTCTAAGCGCTGCATTCAACAACCCGGAGAGGGCTGTTGAATATCTGTACTCTGGTGTTCCTGAGCAGATGGACATTCCAGTTCCACCTCCGAGTATACAGCCAGCCAATCCTACCCAGGCTTCACAGGCAACTCAACCAGCAGCTCCATCAATTCTTTCGTCTGGACCAAACGCTAGTCCCTTGGACCTCTTTCCTCAAGCCCTTCCAAATGCTTCCACCGATGCTGCTGGTCTAGGAAATCTTGATGCTTTGCGCAATAATGCACAATTCCGAACCTTGCTTTCTTTAGTGCAAGCCAATCCTCAAATTTTACAGCCATTGCTTCAAGAATTGGGGAAACAAAATCCCCAGATTTTGCAGCTGATTCAGGAAAACCAAGCTGAGTTCCTCCACTTAATCAATGAACCAGCTGAGGGTGATGATGAAGAGAATTTGCTAGACCAGTTTCCAGAGGCAATGCCACAGACCATAGCAGTTACTCCAGAGGAGAATGAAGCCATACTTCGTCTTGAAGCAATGGGCTTTGACCGCGCGCTTGTTCTGGACGTGTTCTTCGCTTGCAACAAGGACGAGCAGCTGGCGGCAAACTATCTCCTAGATCACATGAACGAGTTCGACGACGAGGGGCCACCATAA
Protein Sequence
- >LOC_Os09g24200.2 protein MKISVKTLKGSTFQIEVDSAQKVADVKRIIETTQGQHIYPAEQQMLIHQGKVLKDDTTLDENKVLENSFLVIMLRQGKGSSSSAPATSKAPSNQAPPTQTVPAAPASQAPVAPATTVPVTVSAPTPTATASPAPAVAVSSEADNYGQATSNLVAGSNLEATIQSILEMGGGIWDRDIVLHALSAAFNNPERAVEYLYSGVPEQMDIPVPPPSIQPANPTQASQATQPAAPSILSSGPNASPLDLFPQALPNASTDAAGLGNLDALRNNAQFRTLLSLVQANPQILQPLLQELGKQNPQILQLIQENQAEFLHLINEPAEGDDEENLLDQFPEAMPQTIAVTPEENEAILRLEAMGFDRALVLDVFFACNKDEQLAANYLLDHMNEFDDEGPP*
- >LOC_Os09g24200.1 protein MKISVKTLKGSTFQIEVDSAQKVADVKRIIETTQGQHIYPAEQQMLIHQGKVLKDDTTLDENKVLENSFLVIMLRQGKGSSSSAPATSKAPSNQAPPTQTVPAAPASQAPVAPATTVPVTVSAPTPTATASPAPAVAVSSEADNYGQATSNLVAGSNLEATIQSILEMGGGIWDRDIVLHALSAAFNNPERAVEYLYSGVPEQMDIPVPPPSIQPANPTQASQATQPAAPSILSSGPNASPLDLFPQALPNASTDAAGLGNLDALRNNAQFRTLLSLVQANPQILQPLLQELGKQNPQILQLIQENQAEFLHLINEPAEGDDEENLLDQFPEAMPQTIAVTPEENEAILRLEAMGFDRALVLDVFFACNKDEQLAANYLLDHMNEFDDEGPP*