Gene Details:
- MSU gene ID: LOC_Os10g35640
- RAPdb gene ID: Os10g0499500
- Gene Symbol: Rf1b
- Genome: MSU7 , IRGSP-1.0
- Species: Oryza sativa
Functional Descriptions:
- Two fertility restorer genes, Rf1a and Rf1b, were identified at the classical locus Rf-1 as members of a multigene cluster that encode pentatricopeptide repeat proteins.
- RF1A and Rf1b are both targeted to mitochondria and can restore male fertility by blocking ORF79 production via endonucleolytic cleavage (RF1A) or degradation (Rf1b) of dicistronic B-atp6/orf79 mRNA.
Function-related keywords:
Literature:
- A codominant DNA marker closely linked to the rice nuclear restorer gene, RF-1, identified with inter-SSR fingerprinting . DOI: 10.1139/g96-152 ; PMID: 8983188
- Cytoplasmic male sterility of rice with boro II cytoplasm is caused by a cytotoxic peptide and is restored by two related PPR motif genes via distinct modes of mRNA silencing . DOI: 10.1105/tpc.105.038240 ; PMID: 16489123
Related News:
Gene Resources:
- NCBI ID: DQ311054
- UniProt accessions:
Sequences:
cDNA Sequence
- >LOC_Os10g35640.1 cDNA GTCGTCTTCTTCCCGCGCCTTTCGCGAAGCCAACTGCTCGAACGGACGCACCCGTGCAGCCGCGCTCGTCGGCCGTCGCCGTCGAGGCCGCCCCTCCGCCGCCGCCAGCAGCTGATCCGTTCGCCATTCCTTCGCGCGCTGGTTTCCACCTTTCCTTGCCCGTCCGTCAGGCCGGACATGGCACGCCGCGTCGCTGCCCGCGCCCGCGCCCGCGCCGGCGGCGTCCCGCGCTCGGAGGGTACGATCCAAGACCGAGCACGCGTTGGGAGCGGTGGCGCCGAGGACGCACTCGACGTGTTCGACGAATTGCTCCGGCGAGGCATCGGCGCTCCGATCCGCAGCTTGAACGGCGCTCTCGCCGACGTCGCGCGCGACAACCCCGCGGCCGCTGTGTCCCGCTTCAACCGCATGGCACGAGCTGGTGCCAGCATGGTAACTCCCACCGTGCACACCTATGGCATCCTCATCGGCTGCTGCTGCAGTGCGGGCCGCTTAGACCTCGGTTTCGCGGCCTTGGGCCATGTCGTTAAGAAGGGATTCAGAGTGGAACCCATCATCTTTAATCCTCTGCTCAAGGGCCTCTGTGCAGACAAGAGGACGGACGACGCAATGGACATAGTGCTCCGTGGAATGACCGAGCTCAGCTGCGTGCCAAATGTCTTCTCCCACACCATTATTCTCAAGGGACTCTGTCATGAGAACAGAAGCCAAGAAGCTCTCGAGCTGCTCCACATGATGGCTGATGATGGAGGAGGCTGCTTACCTAATGTTGTGTCATACAGCACCGTCATCGATGGCCTCTTGAAAGGAGGGGATCCGGACAAAGCCTACGCTACATACCGTGAAATGCTTGACCGGAGGATTTTGCCAAATGTTGTGATTTACAGCTCCATTATTGCTGCCCTATGCAAGGGTCAAGCAATGGACAAGGCCATGGAGGTACACGATAGGATGGTTAAGAATGGAGTTACACCCAATTGCTTCACGTATACTAGTCTTGTGCATGGATTTTGCTCTTCAGGGCAGTTGACAGAGGCTATTAAATTTCTAGAAAAGATGTGCAGCAATGGTGTTGAACCAAATGTTGTTACTTATAGCTCGTTTATGGACTATCTCTGCAAGAACGGAAGATGCACAGAAGCTAGAAAGATTTTTGATTCTATGGTCAAGAGGGGCCTAAAGCCTGATATTACTACCTACAGTAGCTTACTTCATGGGTATGCTATCGAAGGAGCTCTTGTTGAGATGCATGGTCTCTTTGATTTGATGGTACAAAGTGATATGCAACCCGATCATTATGTCTTCAACACACTAATATATGCATCCGCCAAGCAAGGAAAAGTAGATGAGGCCATGCTTGTATTTAGCAAAATGAGGCAGCAAGGATTGAAACCTAATTGTGTTACGTATAGCACTTTGATTAATGGCTACTGTAAAATTACTAGGATGGAGAATGCTTTAGCACTTTTCCAAGAGATGGTGAGCAATGGTGTTAGTCCTAATTTTATCACATATAACATAATGCTGCAAGGTTTATTTCGTACAGGAAGAACTGCTACTGCAAAAGAATTCTATGTACAGATTATCAAAAGTGGCAAAAAAGATCTTATAGAACAGGGGTTGCTAGAAGAATTGGATGATCTATTTCTTTCAATGGAGGACAATGACTGTAGTACTGTGTCGACTCCTGCATGCTAAATTGCAGAGTTACAAAGTTACTTCAAAAAGGGGAAGTAGGCACTAGGCAGTGCTGGGGTTTACATGTCCAAAATTGATCAAAATAACCTCCCCGTTGAAGCTTCGACTGTTGATTTGCTGATTTTGCTGATTTCAAGCAGGAAATTCAATCAAACATACGGAATTTCTCCCTGAAAAGTTTTGCTCTGAAGTGAAATCCATCCTGTTTGAAATGGCCTACAGTTATGCAGTTGTAACTGGCTATTGTTGGCCTTCTCACTGAATTAGTAATACAAACAAGAAATTCTGGACCACTCTATGTTTGGGGATCACCTTTATCTGTTACATGTGGATTGCTAGGTACAAACTGCCCTTTTTTTTGTCACACTATATCTGATTCCCTTCGAAGAAAAATTCCCAGATGATATTATAGTTCTCTAATTTTGCTACTTTTTGTAGCTTTGTTAGAACTAATTTATTATCTGCTAAACTTGCAGTGACAAAGATTCCCCTGTATGATAAATAGCATAGTTAGCAGACTGTTTCACAGAGGTGCACTAAGCAGAGCTGGTGCTTACCTCTCCATGACTGATGATAAGCACTTCTCTCTCAAAGCATGGTCTGTTTCCCTGTTTTATAGATCTTTTTTTCTGGAGGCAAACACCAAGAATATCATAGGTTTTCCCCTGAAAAGTACAAGTATTTATAGAATATTGGAACCGCTGAAGATTTTTGCAGCTACGAAATTCTGAATTGGAATTCTTGTCTGCTACAATCCTGCTAGTGGAGGGTTCTTTTCTCTGTATGCATAAATAGCAAGGTTTCAATCAAGAGGGTTTCATGAGTTCAATTATGAATACTGTTGGGTCTATACTAGTTTGCCTTTCTCCGCACTGAAGAAATGATAGAAGTATTGTTATTCAACAAATGCAGTATTTAATTATCCAAAAAAAAACATTGTGGAACAAGATCTTGTTGTATAAAATGATATTCTACTGGATCATCATATCTCCAACATATTAATACTATGTGCATATGGTAAA
CDS Sequence
- >LOC_Os10g35640.1 CDS ATGGCACGCCGCGTCGCTGCCCGCGCCCGCGCCCGCGCCGGCGGCGTCCCGCGCTCGGAGGGTACGATCCAAGACCGAGCACGCGTTGGGAGCGGTGGCGCCGAGGACGCACTCGACGTGTTCGACGAATTGCTCCGGCGAGGCATCGGCGCTCCGATCCGCAGCTTGAACGGCGCTCTCGCCGACGTCGCGCGCGACAACCCCGCGGCCGCTGTGTCCCGCTTCAACCGCATGGCACGAGCTGGTGCCAGCATGGTAACTCCCACCGTGCACACCTATGGCATCCTCATCGGCTGCTGCTGCAGTGCGGGCCGCTTAGACCTCGGTTTCGCGGCCTTGGGCCATGTCGTTAAGAAGGGATTCAGAGTGGAACCCATCATCTTTAATCCTCTGCTCAAGGGCCTCTGTGCAGACAAGAGGACGGACGACGCAATGGACATAGTGCTCCGTGGAATGACCGAGCTCAGCTGCGTGCCAAATGTCTTCTCCCACACCATTATTCTCAAGGGACTCTGTCATGAGAACAGAAGCCAAGAAGCTCTCGAGCTGCTCCACATGATGGCTGATGATGGAGGAGGCTGCTTACCTAATGTTGTGTCATACAGCACCGTCATCGATGGCCTCTTGAAAGGAGGGGATCCGGACAAAGCCTACGCTACATACCGTGAAATGCTTGACCGGAGGATTTTGCCAAATGTTGTGATTTACAGCTCCATTATTGCTGCCCTATGCAAGGGTCAAGCAATGGACAAGGCCATGGAGGTACACGATAGGATGGTTAAGAATGGAGTTACACCCAATTGCTTCACGTATACTAGTCTTGTGCATGGATTTTGCTCTTCAGGGCAGTTGACAGAGGCTATTAAATTTCTAGAAAAGATGTGCAGCAATGGTGTTGAACCAAATGTTGTTACTTATAGCTCGTTTATGGACTATCTCTGCAAGAACGGAAGATGCACAGAAGCTAGAAAGATTTTTGATTCTATGGTCAAGAGGGGCCTAAAGCCTGATATTACTACCTACAGTAGCTTACTTCATGGGTATGCTATCGAAGGAGCTCTTGTTGAGATGCATGGTCTCTTTGATTTGATGGTACAAAGTGATATGCAACCCGATCATTATGTCTTCAACACACTAATATATGCATCCGCCAAGCAAGGAAAAGTAGATGAGGCCATGCTTGTATTTAGCAAAATGAGGCAGCAAGGATTGAAACCTAATTGTGTTACGTATAGCACTTTGATTAATGGCTACTGTAAAATTACTAGGATGGAGAATGCTTTAGCACTTTTCCAAGAGATGGTGAGCAATGGTGTTAGTCCTAATTTTATCACATATAACATAATGCTGCAAGGTTTATTTCGTACAGGAAGAACTGCTACTGCAAAAGAATTCTATGTACAGATTATCAAAAGTGGCAAAAAAGATCTTATAGAACAGGGGTTGCTAGAAGAATTGGATGATCTATTTCTTTCAATGGAGGACAATGACTGTAGTACTGTGTCGACTCCTGCATGCTAA
Protein Sequence
- >LOC_Os10g35640.1 protein MARRVAARARARAGGVPRSEGTIQDRARVGSGGAEDALDVFDELLRRGIGAPIRSLNGALADVARDNPAAAVSRFNRMARAGASMVTPTVHTYGILIGCCCSAGRLDLGFAALGHVVKKGFRVEPIIFNPLLKGLCADKRTDDAMDIVLRGMTELSCVPNVFSHTIILKGLCHENRSQEALELLHMMADDGGGCLPNVVSYSTVIDGLLKGGDPDKAYATYREMLDRRILPNVVIYSSIIAALCKGQAMDKAMEVHDRMVKNGVTPNCFTYTSLVHGFCSSGQLTEAIKFLEKMCSNGVEPNVVTYSSFMDYLCKNGRCTEARKIFDSMVKRGLKPDITTYSSLLHGYAIEGALVEMHGLFDLMVQSDMQPDHYVFNTLIYASAKQGKVDEAMLVFSKMRQQGLKPNCVTYSTLINGYCKITRMENALALFQEMVSNGVSPNFITYNIMLQGLFRTGRTATAKEFYVQIIKSGKKDLIEQGLLEELDDLFLSMEDNDCSTVSTPAC*