Gene Details:
- MSU gene ID: LOC_Os10g36848
- RAPdb gene ID: Os10g0512400
- Gene Symbol: OsCAld5H1 CYP84A5
- Genome: MSU7 , IRGSP-1.0
- Species: Oryza sativa
Functional Descriptions:
- Among three CAld5H genes identified in rice, OsCAld5H1 (CYP84A5) appeared to be predominantly expressed in lignin-producing rice vegetative tissues.
- Our data collectively demonstrate that OsCAld5H1 expression is a major factor controlling S/G lignin composition in rice cell walls.
- In the present study, to further investigate the effect of suppression of OsCAld5H1 on rice lignin structure, we generated loss-of-function mutants of OsCAld5H1 using the CRISPR/Cas9-mediated genome editing system.
Function-related keywords:
Literature:
- Regulation of CONIFERALDEHYDE 5-HYDROXYLASE expression to modulate cell wall lignin structure in rice . DOI: 10.1007/s00425-017-2692-x ; PMID: 28421330
- Lignin characterization of rice CONIFERALDEHYDE 5-HYDROXYLASE loss-of-function mutants generated with the CRISPR/Cas9 system . DOI: 10.1111/tpj.14141 ; PMID: 30375064
Related News:
Gene Resources:
Sequences:
cDNA Sequence
- >LOC_Os10g36848.1 cDNA ATATAAACCCTGGATCATCCTAACTTTCTCCTCAGCTCTACACCAAGAGCGCTTATAAACATAAAAAACATCTCAAACACAACCCAAAATAGGGCCAAAATTCTAGAATATTATTTTTGTTTTGAAAGGAATTTAAGTTTGTGTGGTGTGTCATCCATGGCGGACATGGTGAAGTTCACCATGGAGTGGCTTCAGGATCCTCTGAGCCTGGCGATCGTCGTCACGGTGGCCGTCCTAATCATGCGGATGCAGCGGCGGCGCGCGGCGCCGTTCCCGCCGGGGCCGAAGCCGCTGCCGATCGTCGGCAACATGGCGATGATGGACCAGCTGACGCACCGCGGCCTGGCAGCGCTGGCGAAGGAGTACGGCGGCCTGATGCACCTCCGGCTCGGCCGGCTCCACGCGTTCGCCGTGTCGACGCCGGAGTACGCGCGCGAGGTGCTCCAGGCGCAGGACGGCGCGTTCTCGAACAGGCCGGCGACCACGGCGATCGCCTACCTCACCTACGACCGCGCGGACATGGCGTTCGCGCACTACGGGCCCTTCTGGCGCCAGATGAGGAAGCTGTGCGTGGTGAAGCTCTTCAGCCGGCGCCGCGCCGAGACGTGGCTCGCCGTGCGCGACGAGTCCGCGGCGCTCGTGCGCGCCGTGGCGGCGTCGCGCGGCGAGGCCGCCGTCAACCTCGGCGAGCTCATCTTCAACCTCACCAAGAACGTCATCTTCCGCGCCGCGTTCGGCACGCGCGACGGCGAGGGGCACGACGAGTTCATCGCCATCCTCCAGGAGTTCTCCAAGCTGTTCGGCGCGTTCAACATCGGCGACTTCATCCCCTGGCTCAGCTGGGCGGACACCAACGGCATCAACGCCCGCCTCGTCGCGGCGCGCACCGCGCTCGACAGGTTCATCGACAAGATCATCGACGAGCACATGGAGCGCGGCAAGAACCCCGACGACGCCGACGCCGACATGGTCGACGACATGCTCGCGTTCCTCGCCGAGGCCAAGCCGCACGCCGGCAAGGCCGCCGCCGCCGCCGCCGGCGCCGGCGACGGGGCCGACGACCTGCAGAACACGCTCCGCCTCACCCGCGACAACATCAAGGCCATCATCATGGACGTGATGTTCGGGGGGACGGAGACGGTGGCGTCGGCGATCGAGTGGGCGATGGCGGAGATGATGCACAGCCCCGACGACCTCCGCCGCGTGCAGGAGGAGCTCGCCGCCGTGGTGGGCCTCGGCCGGGACGTCGCCGAGTCCGACCTCGACAAGCTCCCCTTCCTCCGCTGCGTCATCAAGGAGACGCTCCGCCTCCACCCGCCCATCCCCATCCTCCTCCACGAGACCGCCGCCGACTGCCTCGTCGCCGGCTACTCCGTCCCCAGGGGCTCCCGCGTCATGGTCAACGTGTGGGCCATCGCCCGCGACCGCGCCGCCTGGGGCCCCGACGCCGACGCGTTCCGCCCCTCGCGGTTCGCCGCCGGCGCCGCCGCCGAGGGGCTCGACTTCAGGGGCGGCTGCTTCGAGTTCCTCCCCTTCGGCTCCGGCCGCCGCTCGTGCCCGGGCATGGCGCTGGGGCTCTACGCGCTCGAGCTCGCCGTCGCGCGGCTCGCCCACGGCTTCAACTGGTCGCTCCCCGACGGGATGAAGCCGTCCGAGCTCGACATGTCCGACATCTTCGGCCTCACCGCGCCGCGCGCCACCCGCCTCTCCGCCGTCGCCACGCCCCGGCTCACCTGCCCCTTGTACTGACGGCGGCCGGCGACCGCGGCGGCGTACGGCAAGAATGGTTTGCAGGTGATGGTGTTAAAAGTTCAGACGCGTGTGGCGCCATTGGAGGAGCTTGGTGTGGCTAGCTTAGCTTCCTCTGGGCCTTTTTTTTTTTGCTGGTTTAATTTTCTTTTTTTTTTCTCCTTTGTAATTTAATCCATGTCTCCAGAACAATAAGTGGATTAGTAGGGTATAATTAAGGGTGACAGTGTGATATATAGACTATAAGATCAAAGTTGTAAATTTGGTGTCCGGTGTGCCTGTCCACATAAGCACAGCCTCTGAATTTTCTTGTAAAACTTTGTCATGAAAATTGAGAAAGAAAACACCTCGCTTTCCACGCGTACGCTTACCAAACTATTAAA
CDS Sequence
- >LOC_Os10g36848.1 CDS ATGGCGGACATGGTGAAGTTCACCATGGAGTGGCTTCAGGATCCTCTGAGCCTGGCGATCGTCGTCACGGTGGCCGTCCTAATCATGCGGATGCAGCGGCGGCGCGCGGCGCCGTTCCCGCCGGGGCCGAAGCCGCTGCCGATCGTCGGCAACATGGCGATGATGGACCAGCTGACGCACCGCGGCCTGGCAGCGCTGGCGAAGGAGTACGGCGGCCTGATGCACCTCCGGCTCGGCCGGCTCCACGCGTTCGCCGTGTCGACGCCGGAGTACGCGCGCGAGGTGCTCCAGGCGCAGGACGGCGCGTTCTCGAACAGGCCGGCGACCACGGCGATCGCCTACCTCACCTACGACCGCGCGGACATGGCGTTCGCGCACTACGGGCCCTTCTGGCGCCAGATGAGGAAGCTGTGCGTGGTGAAGCTCTTCAGCCGGCGCCGCGCCGAGACGTGGCTCGCCGTGCGCGACGAGTCCGCGGCGCTCGTGCGCGCCGTGGCGGCGTCGCGCGGCGAGGCCGCCGTCAACCTCGGCGAGCTCATCTTCAACCTCACCAAGAACGTCATCTTCCGCGCCGCGTTCGGCACGCGCGACGGCGAGGGGCACGACGAGTTCATCGCCATCCTCCAGGAGTTCTCCAAGCTGTTCGGCGCGTTCAACATCGGCGACTTCATCCCCTGGCTCAGCTGGGCGGACACCAACGGCATCAACGCCCGCCTCGTCGCGGCGCGCACCGCGCTCGACAGGTTCATCGACAAGATCATCGACGAGCACATGGAGCGCGGCAAGAACCCCGACGACGCCGACGCCGACATGGTCGACGACATGCTCGCGTTCCTCGCCGAGGCCAAGCCGCACGCCGGCAAGGCCGCCGCCGCCGCCGCCGGCGCCGGCGACGGGGCCGACGACCTGCAGAACACGCTCCGCCTCACCCGCGACAACATCAAGGCCATCATCATGGACGTGATGTTCGGGGGGACGGAGACGGTGGCGTCGGCGATCGAGTGGGCGATGGCGGAGATGATGCACAGCCCCGACGACCTCCGCCGCGTGCAGGAGGAGCTCGCCGCCGTGGTGGGCCTCGGCCGGGACGTCGCCGAGTCCGACCTCGACAAGCTCCCCTTCCTCCGCTGCGTCATCAAGGAGACGCTCCGCCTCCACCCGCCCATCCCCATCCTCCTCCACGAGACCGCCGCCGACTGCCTCGTCGCCGGCTACTCCGTCCCCAGGGGCTCCCGCGTCATGGTCAACGTGTGGGCCATCGCCCGCGACCGCGCCGCCTGGGGCCCCGACGCCGACGCGTTCCGCCCCTCGCGGTTCGCCGCCGGCGCCGCCGCCGAGGGGCTCGACTTCAGGGGCGGCTGCTTCGAGTTCCTCCCCTTCGGCTCCGGCCGCCGCTCGTGCCCGGGCATGGCGCTGGGGCTCTACGCGCTCGAGCTCGCCGTCGCGCGGCTCGCCCACGGCTTCAACTGGTCGCTCCCCGACGGGATGAAGCCGTCCGAGCTCGACATGTCCGACATCTTCGGCCTCACCGCGCCGCGCGCCACCCGCCTCTCCGCCGTCGCCACGCCCCGGCTCACCTGCCCCTTGTACTGA
Protein Sequence
- >LOC_Os10g36848.1 protein MADMVKFTMEWLQDPLSLAIVVTVAVLIMRMQRRRAAPFPPGPKPLPIVGNMAMMDQLTHRGLAALAKEYGGLMHLRLGRLHAFAVSTPEYAREVLQAQDGAFSNRPATTAIAYLTYDRADMAFAHYGPFWRQMRKLCVVKLFSRRRAETWLAVRDESAALVRAVAASRGEAAVNLGELIFNLTKNVIFRAAFGTRDGEGHDEFIAILQEFSKLFGAFNIGDFIPWLSWADTNGINARLVAARTALDRFIDKIIDEHMERGKNPDDADADMVDDMLAFLAEAKPHAGKAAAAAAGAGDGADDLQNTLRLTRDNIKAIIMDVMFGGTETVASAIEWAMAEMMHSPDDLRRVQEELAAVVGLGRDVAESDLDKLPFLRCVIKETLRLHPPIPILLHETAADCLVAGYSVPRGSRVMVNVWAIARDRAAWGPDADAFRPSRFAAGAAAEGLDFRGGCFEFLPFGSGRRSCPGMALGLYALELAVARLAHGFNWSLPDGMKPSELDMSDIFGLTAPRATRLSAVATPRLTCPLY*