Gene Details:
- MSU gene ID: LOC_Os12g36030
- RAPdb gene ID: Os12g0545900
- Gene Symbol: LDMAR
- Genome: MSU7 , IRGSP-1.0
- Species: Oryza sativa
Functional Descriptions:
- We found that sufficient amount of the LDMAR transcript is required for normal pollen development of plants grown under long-day conditions.
- This change brought about increased methylation in the putative promoter region of LDMAR, which reduced the transcription of LDMAR specifically under long-day conditions, resulting in premature programmed cell death (PCD) in developing anthers, thus causing PSMS.
Function-related keywords:
Literature:
- A long noncoding RNA regulates photoperiod-sensitive male sterility, an essential component of hybrid rice . DOI: 10.1073/pnas.1121374109 ; PMID: 22308482
Related News:
Gene Resources:
Sequences:
cDNA Sequence
- >LOC_Os12g36030.2 cDNA AGATCGATTCCTCTCCTTCCTTCGGCCTTTTCTCGCTCCCCTTCCTCCTGCGCACGCGTTCTCCCGATGCGCCGCCGCCTCCTGCTCCTCACGCCACCGTTCTGTGCCGCCGGCCCCGCAAGGGACCACCGCGCCGCCCCGCCTCGGAAACCGCCTGGGCGCCGCCACCTCCTGCCGCCGTCACCTGCGCCGACTTCGCGAGGAGCCGCCGCGTCGCCTGCCTTGGGAAGCCGCCGCCTGCCACCTGGGAGCACCCGCCGTCGAAGTCCGGCGCCGGTTCCTCGCCGGGAACCGCCGCCGCCGCCGCAAGCTCCTGCCCGAGCTACGACGAACGCCGCGCCGAGCACCACGCCGCTGCACGCCGCCTGCAATGACGCCTCCAGCCGCCCGTGAACTCGCCGCCCCAAACCACGCTGCCCACGAAATCAGAGAGAACGCAGAACAAATCTTTGAAAAGGCAAGCAAGAAGTAGGTGTACGTGAACTATCAGGTAATTAGGAAAACACATATGGGGAGCATTGATCAATGATCTCCTCGTCACCCACAAATACCTTTAGGCTTGGAAGACATCAAGAATACAGTAGGGACACTTGTATCCAAGGGCGGAGACAAGAGTAGAGCAGCTAGAGCTTGGGAATTTGATGAAACTACTACTGGCTCAGTATAACGGTGTTTAGGCATGTGTCTTAGGGTTTTTAATGGAACTTCATGGGTTGTTAGATGGCACGAACATTGAGTTTCTAATTGTTCTATTTGTATCAGAAGCTACAACATGTAAAGTTGAGTTACATTGTTTGTCTTCAAAGTAAAAGAGACAGAAAACTGCCCCAAA
- >LOC_Os12g36030.1 cDNA AGATCGATTCCTCTCCTTCCTTCGGCCTTTTCTCGCTCCCCTTCCTCCTGCGCACGCGTTCTCCCGATGCGCCGCCGCCTCCTGCTCCTCACGCCACCGTTCTGTGCCGCCGGCCCCGCAAGGGACCACCGCGCCGCCCCGCCTCGGAAACCGCCTGGGCGCCGCCACCTCCTGCCGCCGTCACCTGCGCCGACTTCGCGAGGAGCCGCCGCGTCGCCTGCCTTGGGAAGCCGCCGCCTGCCACCTGGGAGCACCCGCCGTCGAAGTCCGGCGCCGGTTCCTCGCCGGGAACCGCCGCCGCCGCCGCAAGCTCCTGCCCGAGCTACGACGAACGCCGCGCCGAGCACCACGCCGCTGCACGCCGCCTGCAATGACGCCTCCAGCCGCCCGTGAACTCGCCGCCCCAAACCACGCTGCCCACGAAATCAGAGAGAACGCAGAACAAATCTTTGAAAAGGCAAGCAAGAAGTAGGTGTACGTGAACTATCAGGTAATTAGGAAAACACATATGGGGAGCATTGATCAATGATCTCCTCGTCACCCACAAATACCTTTAGGCTTGGAAGACATCAAGAATACAGTAGGGACACTTGTATCCAAGGGCGGAGACAAGAGTAGAGCAGCTAGAGCTTGGGAATTTGATGAAACTACTACTGGCTCAGTATAACGGTGTTTAGGCATGTGTCTTAGGGTTTTTAATGGAACTTCATGGGTTGTTAGATGGCACGAACATTGAGTTTCTAATTGTTCTATTTGTATCAGAAGCTACAACATGTAAAGTTGAGTTACATTGTTTGTCTTCAAAGTAAAAGAGACAGAAAACTGCCCCAAA
- >LOC_Os12g36030.3 cDNA AGATCGATTCCTCTCCTTCCTTCGGCCTTTTCTCGCTCCCCTTCCTCCTGCGCACGCGTTCTCCCGATGCGCCGCCGCCTCCTGCTCCTCACGCCACCGTTCTGTGCCGCCGGCCCCGCAAGGGACCACCGCGCCGCCCCGCCTCGGAAACCGCCTGGGCGCCGCCACCTCCTGCCGCCGTCACCTGCGCCGACTTCGCGAGGAGCCGCCGCGTCGCCTGCCTTGGGAAGCCGCCGCCTGCCACCTGGGAGCACCCGCCGTCGAAGTCCGGCGCCGGTTCCTCGCCGGGAACCGCCGCCGCCGCCGCAAGCTCCTGCCCGAGCTACGACGAACGCCGCGCCGAGCACCACGCCGCTGCACGCCGCCTGCAATGACGCCTCCAGCCGCCCGTGAACTCGCCGCCCCAAACCACGCTGCCCACGAAATCAGAGAGAACGCAGAACAAATCTTTGAAAAGGCAAGCAAGAAGTAGGTGTACGTGAACTATCAGGTAATTAGGAAAACACATATGGGGAGCATTGATCAATGATCTCCTCGTCACCCACAAATACCTTTAGGCTTGGAAGACATCAAGAATACAGTAGGGACACTTGTATCCAAGGGCGGAGACAAGAGTAGAGCAGCTAGAGCTTGGGAATTTGATGAAACTACTACTGGCTCAGTATAACGGTGTTTAGGCATGTGTCTTAGGGTTTTTAATGGAACTTCATGGGTTGTTAGATGGCACGAACATTGAGTTTCTAATTGTTCTATTTGTATCAGAAGCTACAACATGTAAAGTTGAGTTACATTGTTTGTCTTCAAAGTAAAAGAGACAGAAAACTGCCCCAAA
CDS Sequence
- >LOC_Os12g36030.2 CDS ATGCGCCGCCGCCTCCTGCTCCTCACGCCACCGTTCTGTGCCGCCGGCCCCGCAAGGGACCACCGCGCCGCCCCGCCTCGGAAACCGCCTGGGCGCCGCCACCTCCTGCCGCCGTCACCTGCGCCGACTTCGCGAGGAGCCGCCGCGTCGCCTGCCTTGGGAAGCCGCCGCCTGCCACCTGGGAGCACCCGCCGTCGAAGTCCGGCGCCGGTTCCTCGCCGGGAACCGCCGCCGCCGCCGCAAGCTCCTGCCCGAGCTACGACGAACGCCGCGCCGAGCACCACGCCGCTGCACGCCGCCTGCAATGACGCCTCCAGCCGCCCGTGA
- >LOC_Os12g36030.1 CDS ATGCGCCGCCGCCTCCTGCTCCTCACGCCACCGTTCTGTGCCGCCGGCCCCGCAAGGGACCACCGCGCCGCCCCGCCTCGGAAACCGCCTGGGCGCCGCCACCTCCTGCCGCCGTCACCTGCGCCGACTTCGCGAGGAGCCGCCGCGTCGCCTGCCTTGGGAAGCCGCCGCCTGCCACCTGGGAGCACCCGCCGTCGAAGTCCGGCGCCGGTTCCTCGCCGGGAACCGCCGCCGCCGCCGCAAGCTCCTGCCCGAGCTACGACGAACGCCGCGCCGAGCACCACGCCGCTGCACGCCGCCTGCAATGACGCCTCCAGCCGCCCGTGA
- >LOC_Os12g36030.3 CDS ATGCGCCGCCGCCTCCTGCTCCTCACGCCACCGTTCTGTGCCGCCGGCCCCGCAAGGGACCACCGCGCCGCCCCGCCTCGGAAACCGCCTGGGCGCCGCCACCTCCTGCCGCCGTCACCTGCGCCGACTTCGCGAGGAGCCGCCGCGTCGCCTGCCTTGGGAAGCCGCCGCCTGCCACCTGGGAGCACCCGCCGTCGAAGTCCGGCGCCGGTTCCTCGCCGGGAACCGCCGCCGCCGCCGCAAGCTCCTGCCCGAGCTACGACGAACGCCGCGCCGAGCACCACGCCGCTGCACGCCGCCTGCAATGACGCCTCCAGCCGCCCGTGA
Protein Sequence
- >LOC_Os12g36030.2 protein MRRRLLLLTPPFCAAGPARDHRAAPPRKPPGRRHLLPPSPAPTSRGAAASPALGSRRLPPGSTRRRSPAPVPRREPPPPPQAPARATTNAAPSTTPLHAACNDASSRP*
- >LOC_Os12g36030.1 protein MRRRLLLLTPPFCAAGPARDHRAAPPRKPPGRRHLLPPSPAPTSRGAAASPALGSRRLPPGSTRRRSPAPVPRREPPPPPQAPARATTNAAPSTTPLHAACNDASSRP*
- >LOC_Os12g36030.3 protein MRRRLLLLTPPFCAAGPARDHRAAPPRKPPGRRHLLPPSPAPTSRGAAASPALGSRRLPPGSTRRRSPAPVPRREPPPPPQAPARATTNAAPSTTPLHAACNDASSRP*