Gene Details:
- Gene ID: Solyc12g088670
- Gene Symbol: SlCyp1
- Gene Name: low-temperature-induced cysteine proteinase
- Genome: Tomato Genome version SL4.0
- Species: Solanum lycopersicum
Functional Descriptions:
- Here, we show that, in tomato, translocation of a phloem-mobile cyclophilin, SlCyp1, from a wild-type scion into a mutant rootstock results in restoration of vascular development and lateral root initiation.
- We show that long-distance trafficking of SlCyp1 is associated with regulation of the shoot-to-root ratio in response to changing light intensities, by modulating root growth.
- SlCyp1 is a key player in the signal transduction pathway that is required for maintaining a physiologically balanced shoot-to-root ratio under the prevailing environmental conditions.
- We conclude that long-distance trafficking of SlCyp1 acts as a rheostat to control the shoot-to-root ratio, by mediating root development to integrate photosynthesis and light intensity with requirements for access to water and mineral nutrients.
Function-related keywords:
- root , growth , development , shoot , photosynthesis , root-development , root-initiation , root-growth , phloem , signal-transduction , vascular-development , lateral-root
Literature:
- A tomato phloem-mobile protein regulates the shoot-to-root ratio by mediating the auxin response in distant organs. DOI: 10.1111/tpj.12932 ; PMID: 26173789
Related News:
Gene Resources:
Orthologs:
Sequences:
cDNA Sequence
- />Solyc12g088670.2.1
AATCCCCTTCTTCCCCAACAATACAGGAAAAAAAAATAATATCGACCAATCATGGCAGCTCACAGCTCAACTCTCACCATATCCATACTTCTCATGCTCATCTTCTCCACCTTATCCTCTGCTTCCGATATGTCAATTATTAGCTACGACGAGACACATATTCACCGTCGTACCGACGATGAAGTCTCGGCGTTGTACGAGTCCTGGCTAATCGAGCACGGAAAATCGTACAACGCCTTAGGAGAAAAGGATAAGAGATTTCAGATCTTCAAGGATAACTTGAGATACATAGACGAACAGAACTCTGTTCCGAATCAGAGTTATAAGCTCGGATTGACGAAATTCGCCGATCTGACTAATGAGGAGTACAGGTCGATTTACTTGGGAACGAAGAGTTCCGGTGACCGGAAAAAGTTATCGAAGAACAAAAGTGATCGGTATCTTCCTAAAGTTGGGGATAGCTTGCCGGAATCAATTGACTGGAGAGAAAAAGGTGTGCTTGTTGGTGTCAAGGATCAAGGAAGCTGTGGGAGTTGTTGGGCATTCTCTGCTGTTGCTGCCATGGAATCAATAAACGCGATAGTCACTGGGAATTTGATATCACTATCAGAGCAAGAGTTGGTGGATTGTGATAGGTCGTACAATGAAGGTTGCGATGGTGGTCTTATGGACTACGCCTTTGAATTCGTCATTAAGAATGGAGGAATCGACACTGAAGAAGACTACCCTTACAAAGAACGCAATGGCGTATGTGATCAATATAGGAAAAATGCCAAGGTTGTTAAAATAGATAGCTATGAAGATGTTCCTGTTAATAACGAAAAGGCGTTGCAAAAGGCTGTTGCACATCAACCTGTGAGCATTGCACTTGAAGCTGGTGGCAGAGACTTCCAGCACTACAAATCTGGTATCTTCACTGGAAAATGTGGTACTGCAGTGGATCATGGTGTAGTTATTGCTGGATATGGTACTGAGAATGGCATGGATTATTGGATCGTTAGGAACTCATGGGGAGCTAACTGGGGAGAGAACGGCTACCTCAGAGTCCAGCGTAACGTTGCCAGCTCTAGTGGCTTGTGTGGTTTAGCCATAGAGCCTTCATATCCAGTAAAAACAGGACCAAATCCTCCTAAACCCGCTCCATCTCCTCCATCTCCGGTCAAGCCACCTACAGAGTGTGATGAATATTCTCAATGCGCTGTCGGCACCACTTGCTGCTGTATCCTTCAGTTCCGTAGGTCTTGCTTCTCTTGGGGATGCTGCCCACTTGAAGGAGCCACTTGCTGTGAAGACCACTACAGTTGCTGCCCACACGACTATCCTATCTGCAATGTTCGTCAAGGAACATGCTCAATGAGCAAGGGCAACCCACTGGGAGTGAAGGCAATGAAGCGCATTCTTGCACAACCTATTGGGGCCTTCGGAAATGGAGGAAAGAAGAGCAGTTCTTGAATTCTACAAGCACCAATACTGCGGAATGGGGTGAAAAAGCAGGGACAACAGAGGACGTGAATCGATACATTGATTAACAAAACCTCATTTTTCCAGCAGAAAGGTGTAGAAACAGATGAATGCATTATCAAGATTACAAGATGTTGATTAATGATTTGTATATATTGGATTATTGTTCAACTTTGTCTAATTATTCAGTACATATTCCTTGTTTCTTATTATGAAGACTCCAAGTAATGCTTTTTAGTCTTCCATCTGTACTTGGTTTCAACATTAATTAAAAAAAAGGACTATCTTCTGTACCTTTCATTTA
CDS Sequence
- />Solyc12g088670.2.1
ATGGCAGCTCACAGCTCAACTCTCACCATATCCATACTTCTCATGCTCATCTTCTCCACCTTATCCTCTGCTTCCGATATGTCAATTATTAGCTACGACGAGACACATATTCACCGTCGTACCGACGATGAAGTCTCGGCGTTGTACGAGTCCTGGCTAATCGAGCACGGAAAATCGTACAACGCCTTAGGAGAAAAGGATAAGAGATTTCAGATCTTCAAGGATAACTTGAGATACATAGACGAACAGAACTCTGTTCCGAATCAGAGTTATAAGCTCGGATTGACGAAATTCGCCGATCTGACTAATGAGGAGTACAGGTCGATTTACTTGGGAACGAAGAGTTCCGGTGACCGGAAAAAGTTATCGAAGAACAAAAGTGATCGGTATCTTCCTAAAGTTGGGGATAGCTTGCCGGAATCAATTGACTGGAGAGAAAAAGGTGTGCTTGTTGGTGTCAAGGATCAAGGAAGCTGTGGGAGTTGTTGGGCATTCTCTGCTGTTGCTGCCATGGAATCAATAAACGCGATAGTCACTGGGAATTTGATATCACTATCAGAGCAAGAGTTGGTGGATTGTGATAGGTCGTACAATGAAGGTTGCGATGGTGGTCTTATGGACTACGCCTTTGAATTCGTCATTAAGAATGGAGGAATCGACACTGAAGAAGACTACCCTTACAAAGAACGCAATGGCGTATGTGATCAATATAGGAAAAATGCCAAGGTTGTTAAAATAGATAGCTATGAAGATGTTCCTGTTAATAACGAAAAGGCGTTGCAAAAGGCTGTTGCACATCAACCTGTGAGCATTGCACTTGAAGCTGGTGGCAGAGACTTCCAGCACTACAAATCTGGTATCTTCACTGGAAAATGTGGTACTGCAGTGGATCATGGTGTAGTTATTGCTGGATATGGTACTGAGAATGGCATGGATTATTGGATCGTTAGGAACTCATGGGGAGCTAACTGGGGAGAGAACGGCTACCTCAGAGTCCAGCGTAACGTTGCCAGCTCTAGTGGCTTGTGTGGTTTAGCCATAGAGCCTTCATATCCAGTAAAAACAGGACCAAATCCTCCTAAACCCGCTCCATCTCCTCCATCTCCGGTCAAGCCACCTACAGAGTGTGATGAATATTCTCAATGCGCTGTCGGCACCACTTGCTGCTGTATCCTTCAGTTCCGTAGGTCTTGCTTCTCTTGGGGATGCTGCCCACTTGAAGGAGCCACTTGCTGTGAAGACCACTACAGTTGCTGCCCACACGACTATCCTATCTGCAATGTTCGTCAAGGAACATGCTCAATGAGCAAGGGCAACCCACTGGGAGTGAAGGCAATGAAGCGCATTCTTGCACAACCTATTGGGGCCTTCGGAAATGGAGGAAAGAAGAGCAGTTCTTGA
Protein Sequence
- />Solyc12g088670.2.1
MAAHSSTLTISILLMLIFSTLSSASDMSIISYDETHIHRRTDDEVSALYESWLIEHGKSYNALGEKDKRFQIFKDNLRYIDEQNSVPNQSYKLGLTKFADLTNEEYRSIYLGTKSSGDRKKLSKNKSDRYLPKVGDSLPESIDWREKGVLVGVKDQGSCGSCWAFSAVAAMESINAIVTGNLISLSEQELVDCDRSYNEGCDGGLMDYAFEFVIKNGGIDTEEDYPYKERNGVCDQYRKNAKVVKIDSYEDVPVNNEKALQKAVAHQPVSIALEAGGRDFQHYKSGIFTGKCGTAVDHGVVIAGYGTENGMDYWIVRNSWGANWGENGYLRVQRNVASSSGLCGLAIEPSYPVKTGPNPPKPAPSPPSPVKPPTECDEYSQCAVGTTCCCILQFRRSCFSWGCCPLEGATCCEDHYSCCPHDYPICNVRQGTCSMSKGNPLGVKAMKRILAQPIGAFGNGGKKSSS*