Gene Details:
- Gene ID: Solyc10g038080
- Gene Symbol: SlDQD SDH2
- Gene Name: bifunctional 3-dehydroquinate dehydratase/shikimate
- Genome: Tomato Genome version SL4.0
- Species: Solanum lycopersicum
Functional Descriptions:
- The MADS-box protein SlTAGL1 regulates a ripening-associated SlDQD/SDH2 involved in flavonoid biosynthesis and resistance against Botrytis cinerea in post-harvest tomato fruit.
- A ripening-associated SlDQD/SDH member, SlDQD/SDH2, that plays a key role in shikimate and flavonoid metabolism. Overexpression of this gene resulted in an increased content of shikimate and flavonoids, while knockout of this gene by CRISPR/Cas9 mediated gene editing led to a significantly lower content of shikimate and flavonoids by downregulation of flavonoid biosynthesis-related genes.
- The function of SlDQD/SDH family genes in tomato (Solanum lycopersicum) fruit metabolites is still unknown. In the present study, we identified a ripening-associated SlDQD/SDH member, SlDQD/SDH2, that plays a key role in shikimate and flavonoid metabolism.
- Dual-luciferase reporter and EMSA assays indicated that SlDQD/SDH2 is a direct target of the key ripening regulator SlTAGL1.
Function-related keywords:
Literature:
- The MADS-box protein SlTAGL1 regulates a ripening-associated SlDQD/SDH2 involved in flavonoid biosynthesis and resistance against Botrytis cinerea in post-harvest tomato fruit. DOI: 10.1111/tpj.16354 ; PMID: 37326247
Related News:
Gene Resources:
- NCBI ID: 101258500
- UniProt accessions: A0A3Q7IET9
Sequences:
cDNA Sequence
- />Solyc10g038080.3.1
ATATTTGAAGGAAGGAAAAATAATTTTTATGAGAATTCAAATGTAGTTAAAAAAATAAATGTATAGTCAGCGATGAGGCAGCAAGCCACCTACTATTTCTACGGAATTGGCGCAGTATGCAAAAATCAAATGATTCAATTTTTGTTATCTTAATTAGTTTTCAAAGTTGTTGGGTTCCATTCCAAACAAGATTCTCCAACCCCCATTCCATTACTTAAATCTATTACCTATCTTTCACTAACCTACTCAACAACAAATAAATTTCCCAAATTCAACATTTTTTTTCACTATAAATCCCTAAAAGTGGATTATGTTTTAATTCCTAAAAGGGGAAATAATGGGTAGTGTTGGATTGTTGAAGAATTCCGCCATGGTTTGTGCTCCATTAATGGCGACATCAGTGGATCAATTAATTGATGAAATGGTTGAGGCTAAATCACAAGGTGCAGATTGTGTTGAGATTAGGCTTGATGCTATCCACAATTTCCAACCTCACAAACATCTTCAACTTCTCTTCAAAAATAAGCCACTCCCTATTCTCATTCTTTACAGGCCAATATGGGAAAGAAATGACTTTGAAGCTGATGCCCACAAACAATTGGAAGCCCTTCGGTTGGCTAAAGAATTGGGAGCTGATTATGTTGAGTTGGACCTCAAGATAGCTAGTGAGTTTGCAAAAAATGAAAAGTCGAGTTGGAGTAGTGGTTGTAAACTAATTACATCATGCTTCGTGGACAATGTGACCTCAAAAGAAGACCTCAGCCAAGTTGTTGCATCCATGCAATCTACTGGGGCAGATATCCTCAAATTGTTATAAATGCAAATGACATTACAGAACTAGAGAAAACGTTTCACTTGCTTTCACATTGCCAGGTGCCGCTTATCGCCTACTCTGTTGGGGAAGAGGTCTCATAAGTCAGCTGTTGGGCCCAAATTCGGTAGTGTCCTATTATATGGATCTCTTGATGGTAATGCAGTGCCTGGTCTTCCTTCTCTTGCCAGCCTTAGACAAGCCTACGGAGTTGATTTGATGGATAATGATACTAAAGTTTTTGGGCTCATTTCTAAACCAGTGGGTCATAGTAAAGGACCTATTTTGCATAATCCAACGTTTAGACATGTGGGTTATAATGGAATTTATGTTCCAATGTTTGTGGATGATCTTAAGGAGTTCTTTAGGGTCTACTCAAGTCCCGACTTTGCTGGTTTCAGTGTTGGAATTCCATACAAGGAAGCAGTGGTGAGCTTTTGTGATGAAGTCGATCCATTGGCTGAGTCCATAGGGGCTGTAAATACCATCATACGGAGGCCTTGCGATGGGAAGTTAATTGGTTACAACACAGATTGTGAGGCTTCTATAACAGCCATCGAGGATGCTTTGAAAGCAAATGGAGAAGCTTTAGTTCCTTGTTCACTCGCTAGGAAAATGTTTGTGTTGGTGGGTGCTGGAGGTGCAGGAAGAGCTCTTGCATTCGGAGCCAAGAGCAGGGGAGCTCGAATTGTGATTTTTGACATTGATTTTGATAGAGCAAAAGCTCTTGCTGCCGCAGTTAGTGGTGAAGCTCTGCCATTTGAAAAATTAGCTTCTTTTCAGCCAGAGAAAGGTGCAATCCTTGCGAATGCAACACCTATAGGAATGCATCCAAATAAAGATAGGATACCTGTGCCTGAGGGAAGCTTAAAGGATTATGTAGTGGTGTTTGATGCTGTATATACACCACGAAGGACTACTCTACTGGAAGATGCGGAGGCTGCTGGAGCACTCATTGTAAGTGGAGTTGAAATGTTTCTTAGACAGGCTATAGGACAGTTCAACCTTTTCACAGGAAGTAAAGCACCAGAAGAATTCATGCGTGACATCGTTATGTCAAAATTCTAATCATCAACAATTTCAATTAAATTTGTGAAACGCCAACAAGGCTGGCAAAAATTGCATATTTTTTATTCATGACACAAAATCTTGTTAGTATTTTCTTGGATAGCAAAAACTATTGTTGTAATTCAACAATTTGTGCAAATTTGATTCATTTTAAACAAACCATCTTAATTTTTATTTCT
CDS Sequence
- />Solyc10g038080.3.1
ATGGATAATGATACTAAAGTTTTTGGGCTCATTTCTAAACCAGTGGGTCATAGTAAAGGACCTATTTTGCATAATCCAACGTTTAGACATGTGGGTTATAATGGAATTTATGTTCCAATGTTTGTGGATGATCTTAAGGAGTTCTTTAGGGTCTACTCAAGTCCCGACTTTGCTGGTTTCAGTGTTGGAATTCCATACAAGGAAGCAGTGGTGAGCTTTTGTGATGAAGTCGATCCATTGGCTGAGTCCATAGGGGCTGTAAATACCATCATACGGAGGCCTTGCGATGGGAAGTTAATTGGTTACAACACAGATTGTGAGGCTTCTATAACAGCCATCGAGGATGCTTTGAAAGCAAATGGAGAAGCTTTAGTTCCTTGTTCACTCGCTAGGAAAATGTTTGTGTTGGTGGGTGCTGGAGGTGCAGGAAGAGCTCTTGCATTCGGAGCCAAGAGCAGGGGAGCTCGAATTGTGATTTTTGACATTGATTTTGATAGAGCAAAAGCTCTTGCTGCCGCAGTTAGTGGTGAAGCTCTGCCATTTGAAAAATTAGCTTCTTTTCAGCCAGAGAAAGGTGCAATCCTTGCGAATGCAACACCTATAGGAATGCATCCAAATAAAGATAGGATACCTGTGCCTGAGGGAAGCTTAAAGGATTATGTAGTGGTGTTTGATGCTGTATATACACCACGAAGGACTACTCTACTGGAAGATGCGGAGGCTGCTGGAGCACTCATTGTAAGTGGAGTTGAAATGTTTCTTAGACAGGCTATAGGACAGTTCAACCTTTTCACAGGAAGTAAAGCACCAGAAGAATTCATGCGTGACATCGTTATGTCAAAATTCTAA
Protein Sequence
- />Solyc10g038080.3.1
MDNDTKVFGLISKPVGHSKGPILHNPTFRHVGYNGIYVPMFVDDLKEFFRVYSSPDFAGFSVGIPYKEAVVSFCDEVDPLAESIGAVNTIIRRPCDGKLIGYNTDCEASITAIEDALKANGEALVPCSLARKMFVLVGAGGAGRALAFGAKSRGARIVIFDIDFDRAKALAAAVSGEALPFEKLASFQPEKGAILANATPIGMHPNKDRIPVPEGSLKDYVVVFDAVYTPRRTTLLEDAEAAGALIVSGVEMFLRQAIGQFNLFTGSKAPEEFMRDIVMSKF*